Communication structure of cortical networks

Frontiers in Computational Neuroscience

Volumn 5, Issue , 2011, Pages

  Costa, Luciano da Fontoura ^a,b   Batista, João Luiz B ^a   Ascoli, Giorgio A ^c,d  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

^b National Institute of Science and Technology of Complex Systems   (Brazil)

^c George Mason University   (United States)

^d GEORGE MASON UNIVERSITY   (United States)

Author keywords

Accessibility; Complex networks; Cortical networks; Markov chains

Indexed keywords

BRAIN; MAMMALS; MARKOV PROCESSES; TOPOLOGY;

ACCESSIBILITY; COMMUNICATION STRUCTURES; CONFIGURATION MODEL; CORRESPONDING MEASURES; CORTICAL NETWORK; INFORMATION FLOWS; NETWORK TOPOLOGY; TOPOLOGICAL PROPERTIES;

COMPLEX NETWORKS;

BRAIN REGION; CAT; MODEL; THALAMOCORTICAL TRACT;

EID: 84872578949     PISSN: None     EISSN: 16625188     Source Type: Journal    
DOI: 10.3389/fncom.2011.00006     Document Type: Article

References (34)

1. Albert, R., and Barabasi, A. L. (2002). Statistical mechanics of complex networks. Rev. Mod. Phys. 74, 47-97
2. Almendral, J. A., and Diaz-Guilera, A. (2007). Dynamical and spectral properties of complex networks. New J. Phys. 9
3. Arenas, A., Diaz-Guilera, A., and Perez-Vicente, C. J. (2006). Synchronization processes in complex networks. Physica D 224, 27-34.
4. Ascoli, G. A. (2010). The coming of age of the hippocampome. Neuroinformatics 8, 1-3.
5. Auffermann, W. F., Ngan, S.-C., and Hu, X. (2002). Cluster significance testing using bootstrap. Neuroimage 17, 581-591.
6. Bishop, C. M. (2006). Pattern Recognition and Machine Learning. New York, NY: Springer.
7. Biswal, B. B., Mennes, M., Zuo, X. N., Gohel, S., Kelly, C., Smith, S. M., Beckmann, C. F., Adelstein, J. S., Buckner, R. L., Colcombe, S., Dogonowski, A. M., Ernst, M., Fair, D., Hampson, M., Hoptman, M. J., Hyde, J. S., Kiviniemi, V. J., Kotter, R., Li, S. J., Lin, C. P., Lowe, M. J., Mackay, C., Madden, D. J., Madsen, K. H., Margulies, D. S., Mayberg, H. S., McMahon, K., Monk, C. S., Mostofsky, S. H., Nagel, B. J., Pekar, J. J., Peltier, S. J., Petersen, S. E., Riedl, V., Rombouts, S., Rypma, B., Schlaggar, B. L., Schmidt, S., Seidler, R. D., Siegle, G. J., Sorg, C., Teng, G. J., Veijola, J., Villringer, A., Walter, M., Wang, L. H., Weng, X. C., Whitfield-Gabrieli, S., Williamson, P., Windischberger, C., Zang, Y. F., Zhang, H. Y., Castellanos, F. X., and Milham, M. P. (2010). Toward discovery science of human brain function. Proc. Natl. Acad. Sci. U.S.A. 107, 4734-4739.
8. Bohland, J. W., Wu, C. Z., Barbas, H., Bokil, H., Bota, M., Breiter, H. C., Cline, H. T., Doyle, J. C., Freed, P. J., Greenspan, R. J., Haber, S. N., Hawrylycz, M., Herrera, D. G., Hilgetag, C. C., Huang, Z. J., Jones, A., Jones, E. G., Karten, H. J., Kleinfeld, D., Kotter, R., Lester, H. A., Lin, J. M., Mensh, B. D., Mikula, S., Panksepp, J., Price, J. L., Safdieh, J., Saper, C. B., Schiff, N. D., Schmahmann, J. D., Stillman, B. W., Svoboda, K., Swanson, L. W., Toga, A. W., Van Essen, D. C., Watson, J. D., and Mitra, P. P. (2009). A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale. PLoS Comput. Biol. 5, e1000334. doi: 10.1371/journal.pcbi.1000334
9. Bullmore, E., and Sporns, O. (2009). Complex brain networks: graph theoretical analysis of structural and functional systems. Nat. Rev. Neurosci. 10, 186-198.
10. Costa, L. D., Rodrigues, F. A., Travieso, G., and Boas, P. R. V. (2007). Characterization of complex networks: a survey of measurements. Adv. Phys. 56, 167-242.
11. Costa, L. D., and Sporns, O. (2006). Correlating thalamocortical connectivity and activity. Appl. Phys. Lett. 89, 013903.
12. Dorogovtsev, S. N., Goltsev, A. V., and Mendes, J. F. F. (2008). Critical phenomena in complex networks. Rev. Mod. Phys. 80, 1275-1335.
13. Dorogovtsev, S. N., and Mendes, J. F. F. (2002). Evolution of networks. Adv. Phys. 51, 1079-1187.
14. Duda, R. O., Hart, P. E., and Stork, D. G. (2000). Pattern Classification. New York, NY: Wiley-Interscience
15. Estrada, E., and Hatano, N. (2008). Communicability in complex networks. Phys. Rev. E 77, 036111.
16. Hilgetag, C. C., Burns, G., O’Neill, M. A., Scannell, J. W., and Young, M. P. (2000). Anatomical connectivity defines the organization of clusters of cortical areas in the macaque monkey and the cat. Philos. Trans. R. Soc. Lond. B Biol. Sci. 355, 91-110.
17. Hilgetag, C. C., and Kaiser, M. (2004). Clustered organization of cortical connectivity. Neuroinformatics 2, 353-360.
18. Kasthuri, N., and Lichtman, J. W. (2007). The rise of the “projectome”. Nat. Methods 4, 307-308.
19. Kasthuri, N., and Lichtman, J. W. (2010). Neurocartography. Neuropsychopharmacology 35, 342-343
20. Kemeny, J. G., and Snell, J. L. (1976). Finite Markov Chains. Princeton, NJ: Springer-Verlag.
21. Li, T., Zhu, S. H., and Ogihara, M. (2006). Using discriminant analysis for multiclass classification: an experimental investigation. Knowl. Inf. Syst. 10, 453-472.
22. Mason, O., and Verwoerd, M. (2007). Graph theory and networks in biology. IET Syst. Biol. 1, 89-119.
23. Newman, M. E. J. (2003). The structure and function of complex networks. SIAM Rev. 45, 167-256.
24. Newman, M. E. J. (2005). A measure of betweenness centrality based on random walks. Soc. Networks 27, 39-54
25. Noh, J. D., and Rieger, H. (2004). Random walks on complex networks. Phys. Rev. Lett. 92, 118701.
26. Pearson, J. E. (1993). Complex patterns in a simple system. Science 261, 189-192.
27. Pons, P., and Latapy, M. (2006). Computing communities in large networks using random walks. JGAA 10, 191-218
28. Scannell, J. W., Burns, G., Hilgetag, C. C., O’Neil, M. A., and Young, M. P. (1999). The connectional organization of the cortico-thalamic system of the cat. Cereb. Cortex 9, 277-299.
29. Simonsen, I. (2005). Diffusion and networks: a powerful combination! Physica A 357, 317-330.
30. Sporns, O. (2004). “Complex neural dynamics,” in Coordination Dynamics: Issues and Trends, eds V. K. Jirsa and J. A. S. Kelso (Berlin: Springer-Verlag), 197-215.
31. Sporns, O., Chialvo, D. R., Kaiser, M., and Hilgetag, C. C. (2004). Organization, development and function of complex brain networks. Trends Cogn. Sci. 8, 418-425.
32. Sporns, O., and Kotter, R. (2004). Motifs in brain networks. PLoS Biol. 2, 1910-1918. doi: 10.1371/journal.pbio.0020369
33. Sporns, O., Tononi, G., and Kotter, R. (2005). The human connectome: a structural description of the human brain. PLoS Comput. Biol. 1, 245-251. doi: 10.1371/journal.pcbi.0010042
34. Sporns, O., and Zwi, J. D. (2004). The small world of the cerebral cortex. Neuroinformatics 2, 145-162.