메뉴 건너뛰기




Volumn , Issue , 2012, Pages 205-210

Identifying protein complexes based on local fitness method

Author keywords

edge clustering value; local fitness method; PPI network; protein complex

Indexed keywords

CELLULAR ORGANIZATION; COMPETING ALGORITHMS; EDGE CLUSTERING; EDGE WEIGHTS; FITNESS VALUES; FUNCTIONAL MECHANISMS; LOCAL FITNESS; LOCAL MAXIMUM; NOVEL PROTEINS; PROTEIN COMPLEXES; S.CEREVISIAE;

EID: 84872578271     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BIBM.2012.6392670     Document Type: Conference Paper
Times cited : (4)

References (18)
  • 1
    • 0034628508 scopus 로고    scopus 로고
    • A comprehensive analysis of protein-protein interactions in Sacchsromyces cerevisiae
    • Feb.
    • P. Uetz, L. Giot, G. Cagney, T.A. Mansfield et al., "A comprehensive analysis of protein-protein interactions in Sacchsromyces cerevisiae," Nature, vol. 403, no. 6770, Feb. 2000, pp. 623-627.
    • (2000) Nature , vol.403 , Issue.6770 , pp. 623-627
    • Uetz, P.1    Giot, L.2    Cagney, G.3    Mansfield, T.A.4
  • 2
    • 0037050004 scopus 로고    scopus 로고
    • Systematic identification of protein complexes in saccharomyces cerevisiae by mass spectrometry
    • Jan.
    • Y. Ho, A. Gruhler, A. Heilbut, G.D. Bader et al., "Systematic identification of protein complexes in saccharomyces cerevisiae by mass spectrometry," Nature, vol. 415, no. 6868, Jan. 2002, pp. 180-183.
    • (2002) Nature , vol.415 , Issue.6868 , pp. 180-183
    • Ho, Y.1    Gruhler, A.2    Heilbut, A.3    Bader, G.D.4
  • 3
    • 0035860499 scopus 로고    scopus 로고
    • Global analysis of protein activities using proteome chips
    • Sep.
    • H. Zhu, M. Bilgin, R. Bangham, D. Hall, A. Casamayor, P. Bertone et al., "Global analysis of protein activities using proteome chips," Science, vol. 293, no. 5537, Sep. 2001, pp. 2101-2105.
    • (2001) Science , vol.293 , Issue.5537 , pp. 2101-2105
    • Zhu, H.1    Bilgin, M.2    Bangham, R.3    Hall, D.4    Casamayor, A.5    Bertone, P.6
  • 4
    • 0142059836 scopus 로고    scopus 로고
    • Protein complexes and functional modules in molecular networks
    • Sep.
    • V. Spirin and L.A. Mirny, "Protein complexes and functional modules in molecular networks," Proc. Natl. Acad. Sci. USA, vol. 100, no. 21, Sep. 2003, pp. 12123-12128.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , Issue.21 , pp. 12123-12128
    • Spirin, V.1    Mirny, L.A.2
  • 5
    • 20444504323 scopus 로고    scopus 로고
    • Uncoverring the overlapping community structure of complex networks in nature and society
    • Jun.
    • G. Palla, I. Derenyi, I. Farkas, and T. Vicsek, "Uncoverring the overlapping community structure of complex networks in nature and society," Nature, vol. 435, no. 7043, Jun.2005, pp. 814-818.
    • (2005) Nature , vol.435 , Issue.7043 , pp. 814-818
    • Palla, G.1    Derenyi, I.2    Farkas, I.3    Vicsek, T.4
  • 6
    • 54349096842 scopus 로고    scopus 로고
    • Modifying the DPClus Algorithm for Identifying Protein Complexes Based on New Topological Structures
    • Sep.
    • M. Li, J. Chen, J. Wang, B. Hu and G. Chen, "Modifying the DPClus Algorithm for Identifying Protein Complexes Based on New Topological Structures," BMC Bioinformatics, vol. 9, Sep. 2008, pp. 938.
    • (2008) BMC Bioinformatics , vol.9 , pp. 938
    • Li, M.1    Chen, J.2    Wang, J.3    Hu, B.4    Chen, G.5
  • 7
    • 67650735594 scopus 로고    scopus 로고
    • Complex Discovery from Weighted PPI Networks
    • May
    • G. Liu, L. Wong, and H.N. Chua, "Complex Discovery from Weighted PPI Networks," Bioinformatics, vol. 25, no. 15, May. 2009, pp. 1891-1897.
    • (2009) Bioinformatics , vol.25 , Issue.15 , pp. 1891-1897
    • Liu, G.1    Wong, L.2    Chua, H.N.3
  • 8
    • 59649099220 scopus 로고    scopus 로고
    • Predicting Protein Complexes from PPI Data: A Core-Attachment Approach
    • Feb.
    • H.C.M. Leung, Q. Xiang, S.M. Yiu, and F.Y.L. Chin, "Predicting Protein Complexes from PPI Data: A Core-Attachment Approach," J. Comput Biol, vol. 16, no. 2, Feb. 2009, pp. 133-144.
    • (2009) J. Comput Biol , vol.16 , Issue.2 , pp. 133-144
    • Leung, H.C.M.1    Xiang, Q.2    Yiu, S.M.3    Chin, F.Y.L.4
  • 9
    • 33744805096 scopus 로고    scopus 로고
    • Development and implementation of an algorithm for detection of protein complexes in large interaction networks
    • Apr.
    • M. Altaf-Ul-Amin, Y. Shinbo, K. Mihara, K. Kurokawa, and S. Kanaya, "Development and implementation of an algorithm for detection of protein complexes in large interaction networks," BMC Bioinformatics, vol. 7, Apr. 2006, pp. 207-219.
    • (2006) BMC Bioinformatics , vol.7 , pp. 207-219
    • Altaf-Ul-Amin, M.1    Shinbo, Y.2    Mihara, K.3    Kurokawa, K.4    Kanaya, S.5
  • 10
    • 2942552459 scopus 로고    scopus 로고
    • An automated method for finding molecular complexes in large protein interaction networks
    • Jan.
    • G.D. Bader and C.W. Hogue, "An automated method for finding molecular complexes in large protein interaction networks," BMC Bioinformatics, vol. 4, Jan. 2003, pp. 2.
    • (2003) BMC Bioinformatics , vol.4 , pp. 2
    • Bader, G.D.1    Hogue, C.W.2
  • 11
    • 79952841798 scopus 로고    scopus 로고
    • A Fast Hierarchical Clustering Algorithm for Functional Modules Discovery in Protein Interaction Networks
    • May/June
    • J. Wang, M. Li, J. Chen, and Y. Pan, "A Fast Hierarchical Clustering Algorithm for Functional Modules Discovery in Protein Interaction Networks," IEEE/ACM Trans Comput Biol Bioinform, vol. 8, no. 3, May/June, 2011, pp. 607-620.
    • (2011) IEEE/ACM Trans Comput Biol Bioinform , vol.8 , Issue.3 , pp. 607-620
    • Wang, J.1    Li, M.2    Chen, J.3    Pan, Y.4
  • 12
    • 64549145094 scopus 로고    scopus 로고
    • Detecting the overlapping and hierarchical community structure in complex networks
    • Mar.
    • A. Lancichinetti, S. Fortunato, and J. Kertész, "Detecting the overlapping and hierarchical community structure in complex networks," New Journal of Physics, vol. 11, no. 3, Mar. 2009, pp. 033015.
    • (2009) New Journal of Physics , vol.11 , Issue.3 , pp. 033015
    • Lancichinetti, A.1    Fortunato, S.2    Kertész, J.3
  • 14
  • 15
    • 63349085550 scopus 로고    scopus 로고
    • Up-to-date catalogues of yeast protein complexes
    • Dec.
    • S. Pu, J. Wong, B. Turner, E. Cho and S. J. Wodak, "Up-to-date catalogues of yeast protein complexes," Nucleic Acids Research, vol. 37, no. 3, Dec. 2008, pp. 825-831.
    • (2008) Nucleic Acids Research , vol.37 , Issue.3 , pp. 825-831
    • Pu, S.1    Wong, J.2    Turner, B.3    Cho, E.4    Wodak, S.J.5
  • 16
    • 0036088133 scopus 로고    scopus 로고
    • DIP, the Database of Interacting Proteins: A research tool for studying cellular networks of protein interactions
    • Jan.
    • I. Xenarios, L. Salwínski, X.J. Duan, P. Higney, S.M. Kim, and D. Eisenberg, "DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions," Nucleic Acids Res., vol. 30, no. 1, Jan. 2002, pp. 303-305.
    • (2002) Nucleic Acids Res. , vol.30 , Issue.1 , pp. 303-305
    • Xenarios, I.1    Salwínski, L.2    Duan, X.J.3    Higney, P.4    Kim, S.M.5    Eisenberg, D.6
  • 17
    • 9144257282 scopus 로고    scopus 로고
    • The FunCat: A functional annotation scheme for systematic classication of proteins from whole genomes
    • Oct.
    • A. Ruepp, A. Zollner, D. Maier, K. Albermann, J. Hani, M. Mokrejs, et al, "The FunCat: a functional annotation scheme for systematic classication of proteins from whole genomes," Nucleic Acids Research, vol. 32, no. 18, Oct. 2004, pp. 5539-5545.
    • (2004) Nucleic Acids Research , vol.32 , Issue.18 , pp. 5539-5545
    • Ruepp, A.1    Zollner, A.2    Maier, D.3    Albermann, K.4    Hani, J.5    Mokrejs, M.6
  • 18
    • 10244264813 scopus 로고    scopus 로고
    • Protein complex prediction via cost-based clustering
    • A.D. King, N. Przulj, and I. Jurisica, "Protein complex prediction via cost-based clustering," Bioinformatics, vol. 20, no. 17, 2004, pp. 3013-3020
    • (2004) Bioinformatics , vol.20 , Issue.17 , pp. 3013-3020
    • King, A.D.1    Przulj, N.2    Jurisica, I.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.