메뉴 건너뛰기




Volumn 29, Issue 2, 2013, Pages 160-165

Scaffolding low quality genomes using orthologous protein sequences

Author keywords

[No Author keywords available]

Indexed keywords

CALLORHINCHUS MILII; CIONA INTESTINALIS; DROSOPHILA MELANOGASTER; EUKARYOTA; HOMO SAPIENS;

EID: 84872560727     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts661     Document Type: Article
Times cited : (14)

References (17)
  • 1
    • 2442713832 scopus 로고    scopus 로고
    • GeneWise and Genomewise
    • DOI 10.1101/gr.1865504
    • Birney, E. et al. (2004) GeneWise and Genomewise. Genome Res., 14, 988-995. (Pubitemid 38660520)
    • (2004) Genome Research , vol.14 , Issue.5 , pp. 988-995
    • Birney, E.1    Clamp, M.2    Durbin, R.3
  • 3
    • 80053192770 scopus 로고    scopus 로고
    • Comparative genomics approach to detecting split-coding regions in a low-coverage genome: Lessons from the chimaera Callorhinchus milii (Holocephali, Chondrichthyes)
    • Dessimoz, C. et al. (2011) Comparative genomics approach to detecting split-coding regions in a low-coverage genome: lessons from the chimaera Callorhinchus milii (Holocephali, Chondrichthyes). Brief. Bioinform., 12, 474-484.
    • (2011) Brief. Bioinform. , vol.12 , pp. 474-484
    • Dessimoz, C.1
  • 4
    • 33846659488 scopus 로고    scopus 로고
    • Composition-based statistics and translated nucleotide searches: Improving the TBLASTN module of BLAST
    • Gertz, E.M. et al. (2006) Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST. BMC Biol., 4, 41.
    • (2006) BMC Biol. , vol.4 , pp. 41
    • Gertz, E.M.1
  • 5
    • 36048950933 scopus 로고    scopus 로고
    • Gene family evolution across 12 Drosophila genomes
    • Hahn, M.W. et al. (2007) Gene family evolution across 12 Drosophila genomes. PLoS Genet., 3, e197.
    • (2007) PLoS Genet. , vol.3
    • Hahn, M.W.1
  • 6
    • 38549148421 scopus 로고    scopus 로고
    • Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes
    • DOI 10.1101/gr.6249707
    • Heger, A. and Ponting, C.P. (2007) Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes. Genome Res., 17, 1837-1849. (Pubitemid 351360007)
    • (2007) Genome Research , vol.17 , Issue.12 , pp. 1837-1849
    • Heger, A.1    Ponting, C.P.2
  • 7
    • 80855165387 scopus 로고    scopus 로고
    • Genome sequencing reveals insights into physiology and longevity of the naked mole rat
    • Kim, E.B. et al. (2011) Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Nature, 479, 223-227.
    • (2011) Nature , vol.479 , pp. 223-227
    • Kim, E.B.1
  • 8
    • 75149155568 scopus 로고    scopus 로고
    • The sequence and de novo assembly of the giant panda genome
    • Li, R. et al. (2010a) The sequence and de novo assembly of the giant panda genome. Nature, 463, 311-317.
    • (2010) Nature , vol.463 , pp. 311-317
    • Li, R.1
  • 9
    • 75649124547 scopus 로고    scopus 로고
    • De novo assembly of human genomes with massively parallel short read sequencing
    • Li, R. et al. (2010b) De novo assembly of human genomes with massively parallel short read sequencing. Genome Res., 20, 265-272.
    • (2010) Genome Res. , vol.20 , pp. 265-272
    • Li, R.1
  • 10
    • 79251553493 scopus 로고    scopus 로고
    • Comparative and demographic analysis of orang-utan genomes
    • Locke, D.P. et al. (2011) Comparative and demographic analysis of orang-utan genomes. Nature, 469, 529-533.
    • (2011) Nature , vol.469 , pp. 529-533
    • Locke, D.P.1
  • 11
    • 84863012360 scopus 로고    scopus 로고
    • The Drosophila melanogaster Genetic Reference Panel
    • MacKay, T.F.C. et al. (2012) The Drosophila melanogaster Genetic Reference Panel. Nature, 482, 173-178.
    • (2012) Nature , vol.482 , pp. 173-178
    • MacKay, T.F.C.1
  • 12
    • 78650050018 scopus 로고    scopus 로고
    • Scaffolding a Caenorhabditis nematode genome with RNA-seq
    • Mortazavi, A. et al. (2010) Scaffolding a Caenorhabditis nematode genome with RNA-seq. Genome Res., 20, 1740-1747.
    • (2010) Genome Res. , vol.20 , pp. 1740-1747
    • Mortazavi, A.1
  • 13
    • 58549121169 scopus 로고    scopus 로고
    • Assessing the gene space in draft genomes
    • Parra, G. et al. (2009) Assessing the gene space in draft genomes. Nucleic Acids Res., 37, 289-297.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 289-297
    • Parra, G.1
  • 14
    • 39649084637 scopus 로고    scopus 로고
    • Bioinformatics challenges of new sequencing technology
    • Pop, M. and Salzberg, S.L. (2008) Bioinformatics challenges of new sequencing technology. Trends Genet., 24, 142-149.
    • (2008) Trends Genet. , vol.24 , pp. 142-149
    • Pop, M.1    Salzberg, S.L.2
  • 15
    • 52949083195 scopus 로고    scopus 로고
    • Gene-boosted assembly of a novel bacterial genome from very short reads
    • Salzberg, S.L. et al. (2008) Gene-boosted assembly of a novel bacterial genome from very short reads. PLoS Comput. Biol., 4, e1000186.
    • (2008) PLoS Comput. Biol. , vol.4
    • Salzberg, S.L.1
  • 16
    • 78649294100 scopus 로고    scopus 로고
    • Optimization of de novo transcriptome assembly from next-generation sequencing data
    • Surget-Groba, Y. and Montoya-Burgos, J.I. (2010) Optimization of de novo transcriptome assembly from next-generation sequencing data. Genome Res., 20, 1432-1440.
    • (2010) Genome Res. , vol.20 , pp. 1432-1440
    • Surget-Groba, Y.1    Montoya-Burgos, J.I.2
  • 17
    • 34247342594 scopus 로고    scopus 로고
    • Survey sequencing and comparative analysis of the elephant shark (C.milii) genome
    • Venkatesh, B. et al. (2007) Survey sequencing and comparative analysis of the elephant shark (C.milii) genome. PLoS Biol., 5, e101.
    • (2007) PLoS Biol. , vol.5
    • Venkatesh, B.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.