-
1
-
-
77957787512
-
Combating evolution with intelligent design: The neoglycoside ACHN-490
-
E.S. Armstrong, and G.H. Miller Combating evolution with intelligent design: the neoglycoside ACHN-490 Curr. Opin. Microbiol. 13 2010 565 573
-
(2010)
Curr. Opin. Microbiol.
, vol.13
, pp. 565-573
-
-
Armstrong, E.S.1
Miller, G.H.2
-
2
-
-
40549095345
-
Induction of erm(C) expression by noninducing antibiotics
-
DOI 10.1128/AAC.01266-07
-
M. Bailey, T. Chettiath, and A.S. Mankin Induction of erm(C) expression by noninducing antibiotics Antimicrob. Agents Chemother. 52 2008 866 874 (Pubitemid 351358364)
-
(2008)
Antimicrobial Agents and Chemotherapy
, vol.52
, Issue.3
, pp. 866-874
-
-
Bailey, M.1
Chettiath, T.2
Mankin, A.S.3
-
3
-
-
34547696927
-
Structural basis for aminoglycoside inhibition of bacterial ribosome recycling
-
DOI 10.1038/nsmb1271, PII NSMB1271
-
M.A. Borovinskaya, R.D. Pai, W. Zhang, B.S. Schuwirth, J.M. Holton, G. Hirokawa, H. Kaji, A. Kaji, and J.H.D. Cate Structural basis for aminoglycoside inhibition of bacterial ribosome recycling Nat. Struct. Mol. Biol. 14 2007 727 732 (Pubitemid 47220057)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.8
, pp. 727-732
-
-
Borovinskaya, M.A.1
Pai, R.D.2
Zhang, W.3
Schuwirth, B.S.4
Holton, J.M.5
Hirokawa, G.6
Kaji, H.7
Kaji, A.8
Cate, J.H.D.9
-
4
-
-
80052973462
-
Prospects for riboswitch discovery and analysis
-
R.R. Breaker Prospects for riboswitch discovery and analysis Mol. Cell 43 2011 867 879
-
(2011)
Mol. Cell
, vol.43
, pp. 867-879
-
-
Breaker, R.R.1
-
5
-
-
0034699519
-
Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics
-
A.P. Carter, W.M. Clemons, D.E. Brodersen, R.J. Morgan-Warren, B.T. Wimberly, and V. Ramakrishnan Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics Nature 407 2000 340 348
-
(2000)
Nature
, vol.407
, pp. 340-348
-
-
Carter, A.P.1
Clemons, W.M.2
Brodersen, D.E.3
Morgan-Warren, R.J.4
Wimberly, B.T.5
Ramakrishnan, V.6
-
7
-
-
34548253368
-
Structure and Mechanism of a Metal-Sensing Regulatory RNA
-
DOI 10.1016/j.cell.2007.06.051, PII S0092867407009014
-
C.E. Dann 3rd, C.A. Wakeman, C.L. Sieling, S.C. Baker, I. Irnov, and W.C. Winkler Structure and mechanism of a metal-sensing regulatory RNA Cell 130 2007 878 892 (Pubitemid 47332567)
-
(2007)
Cell
, vol.130
, Issue.5
, pp. 878-892
-
-
Dann III, C.E.1
Wakeman, C.A.2
Sieling, C.L.3
Baker, S.C.4
Irnov, I.5
Winkler, W.C.6
-
8
-
-
0014429801
-
Misreading of ribonucleic acid code words induced by aminoglycoside antibiotics. The effect of drug concentration
-
J. Davies, and B.D. Davis Misreading of ribonucleic acid code words induced by aminoglycoside antibiotics. The effect of drug concentration J. Biol. Chem. 243 1968 3312 3316
-
(1968)
J. Biol. Chem.
, vol.243
, pp. 3312-3316
-
-
Davies, J.1
Davis, B.D.2
-
9
-
-
9144274314
-
Rational Design of Inhibitors of HIV-1 TAR RNA through the Stabilisation of Electrostatic "Hot Spots"
-
DOI 10.1016/j.jmb.2003.12.046
-
B. Davis, M. Afshar, G. Varani, A.I.H. Murchie, J. Karn, G. Lentzen, M. Drysdale, J. Bower, A.J. Potter, and I.D. Starkey Rational design of inhibitors of HIV-1 TAR RNA through the stabilisation of electrostatic "hot spots" J. Mol. Biol. 336 2004 343 356 (Pubitemid 38147631)
-
(2004)
Journal of Molecular Biology
, vol.336
, Issue.2
, pp. 343-356
-
-
Davis, B.1
Afshar, M.2
Varani, G.3
Murchie, A.I.H.4
Karn, J.5
Lentzen, G.6
Drysdale, M.7
Bower, J.8
Potter, A.J.9
Starkey, I.D.10
Swarbrick, T.11
Aboul-Ela, F.12
-
10
-
-
0942279627
-
Plasmid-Mediated 16S rRNA Methylase in Serratia marcescens Conferring High-Level Resistance to Aminoglycosides
-
DOI 10.1128/AAC.48.2.491-496.2004
-
Y. Doi, K. Yokoyama, K. Yamane, J. Wachino, N. Shibata, T. Yagi, K. Shibayama, H. Kato, and Y. Arakawa Plasmid-mediated 16S rRNA methylase in Serratia marcescens conferring high-level resistance to aminoglycosides Antimicrob. Agents Chemother. 48 2004 491 496 (Pubitemid 38141707)
-
(2004)
Antimicrobial Agents and Chemotherapy
, vol.48
, Issue.2
, pp. 491-496
-
-
Doi, Y.1
Yokoyama, K.2
Yamane, K.3
Wachino, J.-I.4
Shibata, N.5
Yagi, T.6
Shibayama, K.7
Kato, H.8
Arakawa, Y.9
-
11
-
-
0021305839
-
Translational attenuation: The regulation of bacterial resistance to the macrolide-lincosamide-streptogramin B antibiotics
-
D. Dubnau Translational attenuation: the regulation of bacterial resistance to the macrolide-lincosamide-streptogramin B antibiotics CRC Crit. Rev. Biochem. 16 1984 103 132
-
(1984)
CRC Crit. Rev. Biochem.
, vol.16
, pp. 103-132
-
-
Dubnau, D.1
-
12
-
-
0021142525
-
Regulatory regions that control expression of two chloramphenicol- inducible cat genes cloned in Bacillus subtilis
-
E.J. Duvall, D.M. Williams, S. Mongkolsuk, and P.S. Lovett Regulatory regions that control expression of two chloramphenicol-inducible cat genes cloned in Bacillus subtilis J. Bacteriol. 158 1984 784 790 (Pubitemid 14088590)
-
(1984)
Journal of Bacteriology
, vol.158
, Issue.3
, pp. 784-790
-
-
Duvall, E.J.1
Williams, D.M.2
Mongkolsuk, S.3
Lovett, P.S.4
-
13
-
-
34548772860
-
Molecular mimicry in translational regulation: The case of ribosomal protein S15
-
C. Ehresmann, B. Ehresmann, E. Ennifar, P. Dumas, M. Garber, N. Mathy, A. Nikulin, C. Portier, D. Patel, and A. Serganov Molecular mimicry in translational regulation: the case of ribosomal protein S15 RNA Biol. 1 2004 66 73
-
(2004)
RNA Biol.
, vol.1
, pp. 66-73
-
-
Ehresmann, C.1
Ehresmann, B.2
Ennifar, E.3
Dumas, P.4
Garber, M.5
Mathy, N.6
Nikulin, A.7
Portier, C.8
Patel, D.9
Serganov, A.10
-
14
-
-
0029943824
-
In vitro selection analysis of neomycin binding RNAs with a mutagenized pool of variants of the 16S rRNA decoding region
-
DOI 10.1021/bi952479r
-
M. Famulok, and A. Hüttenhofer In vitro selection analysis of neomycin binding RNAs with a mutagenized pool of variants of the 16S rRNA decoding region Biochemistry 35 1996 4265 4270 (Pubitemid 26113485)
-
(1996)
Biochemistry
, vol.35
, Issue.14
, pp. 4265-4270
-
-
Famulok, M.1
Huttenhofer, A.2
-
15
-
-
0029825658
-
Structure of the A site of Escherichia coli 16S ribosomal RNA complexed with an aminoglycoside antibiotic
-
DOI 10.1126/science.274.5291.1367
-
D. Fourmy, M.I. Recht, S.C. Blanchard, and J.D. Puglisi Structure of the A site of Escherichia coli 16S ribosomal RNA complexed with an aminoglycoside antibiotic Science 274 1996 1367 1371 (Pubitemid 26391459)
-
(1996)
Science
, vol.274
, Issue.5291
, pp. 1367-1371
-
-
Fourmy, D.1
Recht, M.I.2
Blanchard, S.C.3
Puglisi, J.D.4
-
16
-
-
33644792751
-
MK box is a new SAM-binding RNA for translational regulation of SAM synthetase
-
DOI 10.1038/nsmb1059, PII N1059
-
R.T. Fuchs, F.J. Grundy, and T.M. Henkin The S(MK) box is a new SAM-binding RNA for translational regulation of SAM synthetase Nat. Struct. Mol. Biol. 13 2006 226 233 (Pubitemid 43348508)
-
(2006)
Nature Structural and Molecular Biology
, vol.13
, Issue.3
, pp. 226-233
-
-
Fuchs, R.T.1
Grundy, F.J.2
Henkin, T.M.3
-
17
-
-
0037072627
-
Instruction of translating ribosome by nascent peptide
-
DOI 10.1126/science.1073997
-
F. Gong, and C. Yanofsky Instruction of translating ribosome by nascent peptide Science 297 2002 1864 1867 (Pubitemid 35024344)
-
(2002)
Science
, vol.297
, Issue.5588
, pp. 1864-1867
-
-
Gong, F.1
Yanofsky, C.2
-
18
-
-
33750874085
-
From ribosome to riboswitch: Control of gene expression in bacteria by RNA structural rearrangements
-
DOI 10.1080/10409230600914294, PII N30R7131220Q9161
-
F.J. Grundy, and T.M. Henkin From ribosome to riboswitch: control of gene expression in bacteria by RNA structural rearrangements Crit. Rev. Biochem. Mol. Biol. 41 2006 329 338 (Pubitemid 44722139)
-
(2006)
Critical Reviews in Biochemistry and Molecular Biology
, vol.41
, Issue.6
, pp. 329-338
-
-
Grundy, F.J.1
Henkin, T.M.2
-
20
-
-
0021227133
-
Induction of macrolide-lincosamide-streptogramin B resistance requires ribosomes able to bind inducer
-
T.J. Gryczan, M. Israeli-Reches, and D. Dubnau Induction of macrolide-lincosamide-streptogramin B resistance requires ribosomes able to bind inducer Mol. Gen. Genet. 194 1984 357 361 (Pubitemid 14108685)
-
(1984)
Molecular and General Genetics
, vol.194
, Issue.3
, pp. 357-361
-
-
Gryczan, T.J.1
Israeli-Reches, M.2
Dubnau, D.3
-
21
-
-
33846540761
-
What are superintegrons?
-
C1, author reply C2
-
R.M. Hall, A.J. Holmes, P.H. Roy, and H.W. Stokes What are superintegrons? Nat. Rev. Microbiol. 5 2007 C1, author reply C2
-
(2007)
Nat. Rev. Microbiol.
, vol.5
-
-
Hall, R.M.1
Holmes, A.J.2
Roy, P.H.3
Stokes, H.W.4
-
22
-
-
41549163979
-
Translational Regulation via L11: Molecular Switches on the Ribosome Turned On and Off by Thiostrepton and Micrococcin
-
DOI 10.1016/j.molcel.2008.01.009, PII S1097276508000440
-
J.M. Harms, D.N. Wilson, F. Schluenzen, S.R. Connell, T. Stachelhaus, Z. Zaborowska, C.M.T. Spahn, and P. Fucini Translational regulation via L11: molecular switches on the ribosome turned on and off by thiostrepton and micrococcin Mol. Cell 30 2008 26 38 (Pubitemid 351470144)
-
(2008)
Molecular Cell
, vol.30
, Issue.1
, pp. 26-38
-
-
Harms, J.M.1
Wilson, D.N.2
Schluenzen, F.3
Connell, S.R.4
Stachelhaus, T.5
Zaborowska, Z.6
Spahn, C.M.T.7
Fucini, P.8
-
23
-
-
0030985913
-
Direct observation of aminoglycoside - RNA interactions by surface plasmon resonance
-
DOI 10.1021/ja964290o, PII S0002786396042904
-
M. Hendrix, E.S. Priestley, G.F. Joyce, and C.H. Wong Direct observation of aminoglycoside-RNA interactions by surface plasmon resonance J. Am. Chem. Soc. 119 1997 3641 3648 (Pubitemid 27234365)
-
(1997)
Journal of the American Chemical Society
, vol.119
, Issue.16
, pp. 3641-3648
-
-
Hendrix, M.1
Priestley, E.S.2
Joyce, G.F.3
Wong, C.-H.4
-
24
-
-
0033535566
-
Docking of cationic antibiotics to negatively charged pockets in RNA folds
-
DOI 10.1021/jm981108g
-
T. Hermann, and E. Westhof Docking of cationic antibiotics to negatively charged pockets in RNA folds J. Med. Chem. 42 1999 1250 1261 (Pubitemid 29181147)
-
(1999)
Journal of Medicinal Chemistry
, vol.42
, Issue.7
, pp. 1250-1261
-
-
Hermann, T.1
Westhof, E.2
-
25
-
-
66949174033
-
Translation regulation of integrons gene cassette expression by the attC sites
-
H. Jacquier, C. Zaoui, M.J. Sanson-le Pors, D. Mazel, and B. Berçot Translation regulation of integrons gene cassette expression by the attC sites Mol. Microbiol. 72 2009 1475 1486
-
(2009)
Mol. Microbiol.
, vol.72
, pp. 1475-1486
-
-
Jacquier, H.1
Zaoui, C.2
Sanson-Le Pors, M.J.3
Mazel, D.4
Berçot, B.5
-
26
-
-
0037031594
-
An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes
-
DOI 10.1016/S0092-8674(02)00905-4
-
J. Johansson, P. Mandin, A. Renzoni, C. Chiaruttini, M. Springer, and P. Cossart An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes Cell 110 2002 551 561 (Pubitemid 35247836)
-
(2002)
Cell
, vol.110
, Issue.5
, pp. 551-561
-
-
Johansson, J.1
Mandin, P.2
Renzoni, A.3
Chiaruttini, C.4
Springer, M.5
Cossart, P.6
-
27
-
-
0037062978
-
The antiquity of RNA-based evolution
-
DOI 10.1038/418214a
-
G.F. Joyce The antiquity of RNA-based evolution Nature 418 2002 214 221 (Pubitemid 34773780)
-
(2002)
Nature
, vol.418
, Issue.6894
, pp. 214-221
-
-
Joyce, G.F.1
-
28
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
DOI 10.1093/bioinformatics/btm404
-
M.A. Larkin, G. Blackshields, N.P. Brown, R. Chenna, P.A. McGettigan, H. McWilliam, F. Valentin, I.M. Wallace, A. Wilm, and R. Lopez Clustal W and Clustal X version 2.0 Bioinformatics 23 2007 2947 2948 (Pubitemid 350162903)
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
Mcgettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
29
-
-
0042415065
-
Structural basis for contrasting activities of ribosome binding thiazole antibiotics
-
DOI 10.1016/S1074-5521(03)00173-X
-
G. Lentzen, R. Klinck, N. Matassova, F. Aboul-ela, and A.I.H. Murchie Structural basis for contrasting activities of ribosome binding thiazole antibiotics Chem. Biol. 10 2003 769 778 (Pubitemid 37089852)
-
(2003)
Chemistry and Biology
, vol.10
, Issue.8
, pp. 769-778
-
-
Lentzen, G.1
Klinck, R.2
Matassova, N.3
Aboul-Ela, F.4
Murchie, A.I.H.5
-
30
-
-
0032883206
-
Transposon Tn21, flagship of the floating genome
-
C.A. Liebert, R.M. Hall, and A.O. Summers Transposon Tn21, flagship of the floating genome Microbiol. Mol. Biol. Rev. 63 1999 507 522 (Pubitemid 29422780)
-
(1999)
Microbiology and Molecular Biology Reviews
, vol.63
, Issue.3
, pp. 507-522
-
-
Liebert, C.A.1
Hall, R.M.2
Summers, A.O.3
-
31
-
-
0029982204
-
Ribosome regulation by the nascent peptide
-
P.S. Lovett, and E.J. Rogers Ribosome regulation by the nascent peptide Microbiol. Rev. 60 1996 366 385 (Pubitemid 26170911)
-
(1996)
Microbiological Reviews
, vol.60
, Issue.2
, pp. 366-385
-
-
Lovett, P.S.1
Rogers, E.J.2
-
32
-
-
0038210214
-
Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria
-
DOI 10.1016/S0092-8674(03)00391-X
-
M. Mandal, B. Boese, J.E. Barrick, W.C. Winkler, and R.R. Breaker Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria Cell 113 2003 577 586 (Pubitemid 36694183)
-
(2003)
Cell
, vol.113
, Issue.5
, pp. 577-586
-
-
Mandal, M.1
Boese, B.2
Barrick, J.E.3
Winkler, W.C.4
Breaker, R.R.5
-
33
-
-
34548788950
-
Structured mRNAs Regulate Translation Initiation by Binding to the Platform of the Ribosome
-
DOI 10.1016/j.cell.2007.07.008, PII S0092867407008951
-
S. Marzi, A.G. Myasnikov, A. Serganov, C. Ehresmann, P. Romby, M. Yusupov, and B.P. Klaholz Structured mRNAs regulate translation initiation by binding to the platform of the ribosome Cell 130 2007 1019 1031 (Pubitemid 47422303)
-
(2007)
Cell
, vol.130
, Issue.6
, pp. 1019-1031
-
-
Marzi, S.1
Myasnikov, A.G.2
Serganov, A.3
Ehresmann, C.4
Romby, P.5
Yusupov, M.6
Klaholz, B.P.7
-
34
-
-
33747183094
-
Integrons: Agents of bacterial evolution
-
DOI 10.1038/nrmicro1462, PII NRMICRO1462
-
D. Mazel Integrons: agents of bacterial evolution Nat. Rev. Microbiol. 4 2006 608 620 (Pubitemid 44317023)
-
(2006)
Nature Reviews Microbiology
, vol.4
, Issue.8
, pp. 608-620
-
-
Mazel, D.1
-
36
-
-
18744396047
-
Sensing small molecules by nascent RNA: A mechanism to control transcription in bacteria
-
DOI 10.1016/S0092-8674(02)01134-0
-
A.S. Mironov, I. Gusarov, R. Rafikov, L.E. Lopez, K. Shatalin, R.A. Kreneva, D.A. Perumov, and E. Nudler Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria Cell 111 2002 747 756 (Pubitemid 35446317)
-
(2002)
Cell
, vol.111
, Issue.5
, pp. 747-756
-
-
Mironov, A.S.1
Gusarov, I.2
Rafikov, R.3
Lopez, L.E.4
Shatalin, K.5
Kreneva, R.A.6
Perumov, D.A.7
Nudler, E.8
-
37
-
-
10744222241
-
Structure-based Drug Design Targeting an Inactive RNA Conformation: Exploiting the Flexibility of HIV-1 TAR RNA
-
DOI 10.1016/j.jmb.2003.12.028
-
A.I.H. Murchie, B. Davis, C. Isel, M. Afshar, M.J. Drysdale, J. Bower, A.J. Potter, I.D. Starkey, T.M. Swarbrick, and S. Mirza Structure-based drug design targeting an inactive RNA conformation: exploiting the flexibility of HIV-1 TAR RNA J. Mol. Biol. 336 2004 625 638 (Pubitemid 38183018)
-
(2004)
Journal of Molecular Biology
, vol.336
, Issue.3
, pp. 625-638
-
-
Murchie, A.I.H.1
Davis, B.2
Isel, C.3
Afshar, M.4
Drysdale, M.J.5
Bower, J.6
Potter, A.J.7
Starkey, I.D.8
Swarbrick, T.M.9
Mirza, S.10
Prescott, C.D.11
Vaglio, P.12
Aboul-ela, F.13
Karn, J.14
-
38
-
-
0036753365
-
Genetic control by a metabolite binding mRNA
-
A. Nahvi, N. Sudarsan, M.S. Ebert, X. Zou, K.L. Brown, and R.R. Breaker Genetic control by a metabolite binding mRNA Chem. Biol. 9 2002 1043
-
(2002)
Chem. Biol.
, vol.9
, pp. 1043
-
-
Nahvi, A.1
Sudarsan, N.2
Ebert, M.S.3
Zou, X.4
Brown, K.L.5
Breaker, R.R.6
-
39
-
-
72749118512
-
A pH-responsive riboregulator
-
G. Nechooshtan, M. Elgrably-Weiss, A. Sheaffer, E. Westhof, and S. Altuvia A pH-responsive riboregulator Genes Dev. 23 2009 2650 2662
-
(2009)
Genes Dev.
, vol.23
, pp. 2650-2662
-
-
Nechooshtan, G.1
Elgrably-Weiss, M.2
Sheaffer, A.3
Westhof, E.4
Altuvia, S.5
-
40
-
-
65249146929
-
Multidrug resistance in bacteria
-
H. Nikaido Multidrug resistance in bacteria Annu. Rev. Biochem. 78 2009 119 146
-
(2009)
Annu. Rev. Biochem.
, vol.78
, pp. 119-146
-
-
Nikaido, H.1
-
41
-
-
0346687595
-
The riboswitch control of bacterial metabolism
-
DOI 10.1016/j.tibs.2003.11.004
-
E. Nudler, and A.S. Mironov The riboswitch control of bacterial metabolism Trends Biochem. Sci. 29 2004 11 17 (Pubitemid 38068475)
-
(2004)
Trends in Biochemical Sciences
, vol.29
, Issue.1
, pp. 11-17
-
-
Nudler, E.1
Mironov, A.S.2
-
42
-
-
0033529799
-
Direct crosslinking of the antitumor antibiotic sparsomycin, and its derivatives, to A2602 in the peptidyl transferase center of 23S-like rRNA within ribosome-tRNA complexes
-
DOI 10.1073/pnas.96.16.9003
-
B.T. Porse, S.V. Kirillov, M.J. Awayez, H.C. Ottenheijm, and R.A. Garrett Direct crosslinking of the antitumor antibiotic sparsomycin, and its derivatives, to A2602 in the peptidyl transferase center of 23S-like rRNA within ribosome-tRNA complexes Proc. Natl. Acad. Sci. USA 96 1999 9003 9008 (Pubitemid 29374697)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.16
, pp. 9003-9008
-
-
Porse, B.T.1
Kirillov, S.V.2
Awayez, M.J.3
Ottenheijm, H.C.J.4
Garrett, R.A.5
-
43
-
-
79251557798
-
Nascent peptide in the ribosome exit tunnel affects functional properties of the A-site of the peptidyl transferase center
-
H. Ramu, N. Vázquez-Laslop, D. Klepacki, Q. Dai, J. Piccirilli, R. Micura, and A.S. Mankin Nascent peptide in the ribosome exit tunnel affects functional properties of the A-site of the peptidyl transferase center Mol. Cell 41 2011 321 330
-
(2011)
Mol. Cell
, vol.41
, pp. 321-330
-
-
Ramu, H.1
Vázquez-Laslop, N.2
Klepacki, D.3
Dai, Q.4
Piccirilli, J.5
Micura, R.6
Mankin, A.S.7
-
44
-
-
0037447159
-
Ribosomal protein S15 represses its own translation via adaptation of an rRNA-like fold within its mRNA
-
DOI 10.1093/emboj/cdg170
-
A. Serganov, A. Polonskaia, B. Ehresmann, C. Ehresmann, and D.J. Patel Ribosomal protein S15 represses its own translation via adaptation of an rRNA-like fold within its mRNA EMBO J. 22 2003 1898 1908 (Pubitemid 36460146)
-
(2003)
EMBO Journal
, vol.22
, Issue.8
, pp. 1898-1908
-
-
Serganov, A.1
Polonskaia, A.2
Ehresmann, B.3
Ehresmann, C.4
Patel, D.J.5
-
45
-
-
0242298623
-
An mRNA structure in bacteria that controls gene expression by binding lysine
-
DOI 10.1101/gad.1140003
-
N. Sudarsan, J.K. Wickiser, S. Nakamura, M.S. Ebert, and R.R. Breaker An mRNA structure in bacteria that controls gene expression by binding lysine Genes Dev. 17 2003 2688 2697 (Pubitemid 37363073)
-
(2003)
Genes and Development
, vol.17
, Issue.21
, pp. 2688-2697
-
-
Sudarsan, N.1
Wickiser, J.K.2
Nakamura, S.3
Ebert, M.S.4
Breaker, R.R.5
-
46
-
-
0023108228
-
Inducible expression of an aminoglycoside-acetylating enzyme in Providencia stuartii
-
E. Swiatlo, and F.E. Kocka Inducible expression of an aminoglycoside-acetylating enzyme in Providencia stuartii J. Antimicrob. Chemother. 19 1987 27 30 (Pubitemid 17234575)
-
(1987)
Journal of Antimicrobial Chemotherapy
, vol.19
, Issue.1
, pp. 27-30
-
-
Swiatlo, E.1
Kocka, F.E.2
-
47
-
-
47749093130
-
The bacteria fight back
-
G. Taubes The bacteria fight back Science 321 2008 356 361
-
(2008)
Science
, vol.321
, pp. 356-361
-
-
Taubes, G.1
-
48
-
-
43049089746
-
Molecular Mechanism of Drug-Dependent Ribosome Stalling
-
DOI 10.1016/j.molcel.2008.02.026, PII S1097276508001731
-
N. Vazquez-Laslop, C. Thum, and A.S. Mankin Molecular mechanism of drug-dependent ribosome stalling Mol. Cell 30 2008 190 202 (Pubitemid 351626687)
-
(2008)
Molecular Cell
, vol.30
, Issue.2
, pp. 190-202
-
-
Vazquez-Laslop, N.1
Thum, C.2
Mankin, A.S.3
-
49
-
-
0025873818
-
Antibiotic inhibition of group I ribozyme function
-
U. von Ahsen, J. Davies, and R. Schroeder Antibiotic inhibition of group I ribozyme function Nature 353 1991 368 370 (Pubitemid 21912514)
-
(1991)
Nature
, vol.353
, Issue.6342
, pp. 368-370
-
-
Von Ahsen, U.1
Davies, J.2
Schroeder, R.3
-
50
-
-
0028914553
-
Insights into erythromycin action from studies of its activity as inducer of resistance
-
B. Weisblum Insights into erythromycin action from studies of its activity as inducer of resistance Antimicrob. Agents Chemother. 39 1995 797 805
-
(1995)
Antimicrob. Agents Chemother.
, vol.39
, pp. 797-805
-
-
Weisblum, B.1
-
51
-
-
0037206833
-
Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression
-
DOI 10.1038/nature01145
-
W. Winkler, A. Nahvi, and R.R. Breaker Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression Nature 419 2002 952 956 (Pubitemid 35339632)
-
(2002)
Nature
, vol.419
, Issue.6910
, pp. 952-956
-
-
Winkler, W.1
Nahvi, A.2
Breaker, R.R.3
-
52
-
-
77953704007
-
High prevalence of plasmid-mediated 16S rRNA methylase gene rmtB among Escherichia coli clinical isolates from a Chinese teaching hospital
-
F.Y. Yu, D. Yao, J.Y. Pan, C. Chen, Z.Q. Qin, C. Parsons, L.H. Yang, Q.Q. Li, X.Q. Zhang, D. Qu, and L.X. Wang High prevalence of plasmid-mediated 16S rRNA methylase gene rmtB among Escherichia coli clinical isolates from a Chinese teaching hospital BMC Infect. Dis. 10 2010 184
-
(2010)
BMC Infect. Dis.
, vol.10
, pp. 184
-
-
Yu, F.Y.1
Yao, D.2
Pan, J.Y.3
Chen, C.4
Qin, Z.Q.5
Parsons, C.6
Yang, L.H.7
Li, Q.Q.8
Zhang, X.Q.9
Qu, D.10
Wang, L.X.11
-
53
-
-
0027370433
-
Small molecules that selectively block RNA binding of HIV-1 Rev protein inhibit Rev function and viral production
-
DOI 10.1016/0092-8674(93)90720-B
-
M.L. Zapp, S. Stern, and M.R. Green Small molecules that selectively block RNA binding of HIV-1 Rev protein inhibit Rev function and viral production Cell 74 1993 969 978 (Pubitemid 23289455)
-
(1993)
Cell
, vol.74
, Issue.6
, pp. 969-978
-
-
Zapp, M.L.1
Stern, S.2
Green, M.R.3
-
54
-
-
0029019484
-
Control of the Escherichia coli rrnB P1 promoter strength by ppGpp
-
X. Zhang, and H. Bremer Control of the Escherichia coli rrnB P1 promoter strength by ppGpp J. Biol. Chem. 270 1995 11181 11189
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 11181-11189
-
-
Zhang, X.1
Bremer, H.2
-
55
-
-
40549095345
-
Induction of erm(C) expression by noninducing antibiotics
-
DOI 10.1128/AAC.01266-07
-
Bailey, M.; Chettiath, T.; and Mankin, A.S. (2008). Induction of erm(C) expression by noninducing antibiotics. Antimicrob. Agents Chemother. 52, 866-874. (Pubitemid 351358364)
-
(2008)
Antimicrobial Agents and Chemotherapy
, vol.52
, Issue.3
, pp. 866-874
-
-
Bailey, M.1
Chettiath, T.2
Mankin, A.S.3
-
56
-
-
0942279627
-
Plasmid-Mediated 16S rRNA Methylase in Serratia marcescens Conferring High-Level Resistance to Aminoglycosides
-
DOI 10.1128/AAC.48.2.491-496.2004
-
Doi, Y.; Yokoyama, K.; Yamane, K.; Wachino, J.; Shibata, N.; Yagi, T.; Shibayama, K.; Kato, H.; and Arakawa, Y. (2004). Plasmid-mediated 16S rRNA methylase in Serratia marcescens conferring high-level resistance to aminoglycosides. Antimicrob. Agents Chemother. 48, 491-496. (Pubitemid 38141707)
-
(2004)
Antimicrobial Agents and Chemotherapy
, vol.48
, Issue.2
, pp. 491-496
-
-
Doi, Y.1
Yokoyama, K.2
Yamane, K.3
Wachino, J.-I.4
Shibata, N.5
Yagi, T.6
Shibayama, K.7
Kato, H.8
Arakawa, Y.9
-
57
-
-
0029562737
-
The global folding of four-way helical junctions in RNA, including that in U1 snRNA
-
DOI 10.1016/0092-8674(95)90218-X
-
Duckett, D.R.; Murchie, A.I.; and Lilley, D.M. (1995). The global folding of four-way helical junctions in RNA, including that in U1 snRNA. Cell 83, 1027-1036. (Pubitemid 26006544)
-
(1995)
Cell
, vol.83
, Issue.6
, pp. 1027-1036
-
-
Duckett, D.R.1
Murchie, A.I.H.2
Lilley, D.M.J.3
-
58
-
-
0032488651
-
Exchange between stacking conformers in a four-way DNA junction
-
DOI 10.1021/bi9721492
-
Grainger, R.J.; Murchie, A.I.; and Lilley, D.M. (1998). Exchange between stacking conformers in a four-Way DNA junction. Biochemistry 37, 23-32. (Pubitemid 28049104)
-
(1998)
Biochemistry
, vol.37
, Issue.1
, pp. 23-32
-
-
Grainger, R.J.1
Murchie, A.I.H.2
Lilley, D.M.J.3
-
59
-
-
48449095385
-
The Vienna RNA websuite
-
Gruber, A.R.; Lorenz, R.; Bernhart, S.H.; Neuböck, R.; and Hofacker, I.L. (2008). The Vienna RNA websuite. Nucleic Acids Res. 36(Web Server issue), W70-4.
-
(2008)
Nucleic Acids Res.
, vol.36
, Issue.WEB SERVER ISS.
-
-
Gruber, A.R.1
Lorenz, R.2
Bernhart, S.H.3
Neuböck, R.4
Hofacker, I.L.5
-
60
-
-
0037095730
-
DNAWorks: An automated method for designing oligonucleotides for PCR-based gene synthesis
-
Hoover, D.M.; and Lubkowski, J. (2002). DNAWorks: an automated method for designing oligonucleotides for PCR-based gene synthesis. Nucleic Acids Res. 30, e43.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Hoover, D.M.1
Lubkowski, J.2
-
61
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
DOI 10.1093/bioinformatics/btm404
-
Larkin, M.A.; Blackshields, G.; Brown, N.P.; Chenna, R.; McGettigan, P.A.; McWilliam, H.; Valentin, F.; Wallace, I.M.; Wilm, A.; Lopez, R.; et al. (2007). Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947-2948. (Pubitemid 350162903)
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
Mcgettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
62
-
-
0043122927
-
WU-Blast2 server at the European Bioinformatics Institute
-
DOI 10.1093/nar/gkg573
-
Lopez, R.; Silventoinen, V.; Robinson, S.; Kibria, A.; and Gish, W. (2003). WU-Blast2 server at the European Bioinformatics Institute. Nucleic Acids Res. 31, 3795-3798. (Pubitemid 37442249)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.13
, pp. 3795-3798
-
-
Lopez, R.1
Silventoinen, V.2
Robinson, S.3
Kibria, A.4
Gish, W.5
-
63
-
-
16244412610
-
RNA structure analysis at single nucleotide resolution by Selective 2′-Hydroxyl Acylation and Primer Extension (SHAPE)
-
DOI 10.1021/ja043822v
-
Merino, E.J.; Wilkinson, K.A.; Coughlan, J.L.; and Weeks, K.M. (2005). RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE). J. Am. Chem. Soc. 127, 4223-4231. (Pubitemid 40463047)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.12
, pp. 4223-4231
-
-
Merino, E.J.1
Wilkinson, K.A.2
Coughlan, J.L.3
Weeks, K.M.4
-
64
-
-
0028158657
-
Tetraplex folding of telomere sequences and the inclusion of adenine bases
-
Murchie, A.I.; and Lilley, D.M. (1994). Tetraplex folding of telomere sequences and the inclusion of adenine bases. EMBO J. 13, 993-1001. (Pubitemid 24057532)
-
(1994)
EMBO Journal
, vol.13
, Issue.4
, pp. 993-1001
-
-
Murchie, A.I.H.1
Lilley, D.M.J.2
-
65
-
-
0034740227
-
Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome
-
DOI 10.1016/S0097-8485(01)00099-7, PII S0097848501000997
-
Reese, M.G. (2001). Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome. Comput. Chem. 26, 51-56. (Pubitemid 33034559)
-
(2001)
Computers and Chemistry
, vol.26
, Issue.1
, pp. 51-56
-
-
Reese, M.G.1
-
66
-
-
84897585709
-
In-line probing analysis of riboswitches
-
Regulski, E.E.; and Breaker, R.R. (2008). In-line probing analysis of riboswitches. Methods Mol. Biol. 419, 53-67.
-
(2008)
Methods Mol. Biol.
, vol.419
, pp. 53-67
-
-
Regulski, E.E.1
Breaker, R.R.2
-
67
-
-
0032831634
-
Relationship between internucleotide linkage geometry and the stability of RNA
-
DOI 10.1017/S1355838299990891
-
Soukup, G.A.; and Breaker, R.R. (1999). Relationship between internucleotide linkage geometry and the stability of RNA. RNA 5, 1308-1325. (Pubitemid 29489813)
-
(1999)
RNA
, vol.5
, Issue.10
, pp. 1308-1325
-
-
Soukup, G.A.1
Breaker, R.R.2
-
68
-
-
79954572865
-
A novel function of the mitochondrial transcription factor Mtf1 in fission yeast; Mtf1 regulates the nuclear transcription of srk1
-
Sun, W.; Wang, Z.; Jiang, H.; Zhang, J.; Bähler, J.; Chen, D.; and Murchie, A.I.H. (2011). A novel function of the mitochondrial transcription factor Mtf1 in fission yeast; Mtf1 regulates the nuclear transcription of srk1. Nucleic Acids Res. 39, 2690-2700.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 2690-2700
-
-
Sun, W.1
Wang, Z.2
Jiang, H.3
Zhang, J.4
Bähler, J.5
Chen, D.6
Murchie, A.I.H.7
-
69
-
-
38449119903
-
DMS footprinting of structured RNAs and RNA-protein complexes
-
Tijerina, P.; Mohr, S.; and Russell, R. (2007). DMS footprinting of structured RNAs and RNA-protein complexes. Nat. Protoc. 2, 2608-2623.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 2608-2623
-
-
Tijerina, P.1
Mohr, S.2
Russell, R.3
-
70
-
-
40849118189
-
Asp revealed by single-nucleotide resolution SHAPE chemistry
-
DOI 10.1021/bi702372x
-
Wang, B.; Wilkinson, K.A.; and Weeks, K.M. (2008). Complex ligand-induced conformational changes in tRNA(Asp) revealed by single-nucleotide resolution SHAPE chemistry. Biochemistry 47, 3454-3461. (Pubitemid 351399234)
-
(2008)
Biochemistry
, vol.47
, Issue.11
, pp. 3454-3461
-
-
Wang, B.1
Wilkinson, K.A.2
Weeks, K.M.3
-
71
-
-
40849123031
-
High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states
-
Wilkinson, K.A.; Gorelick, R.J.; Vasa, S.M.; Guex, N.; Rein, A.; Mathews, D.H.; Giddings, M.C.; and Weeks, K.M. (2008). High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states. PLoS Biol. 6, e96.
-
(2008)
PLoS Biol
, vol.6
-
-
Wilkinson, K.A.1
Gorelick, R.J.2
Vasa, S.M.3
Guex, N.4
Rein, A.5
Mathews, D.H.6
Giddings, M.C.7
Weeks, K.M.8
-
72
-
-
0029790609
-
A fluorescence-labeling method for sequencing small RNA on polyacrylamide gel
-
Wu, T.P.; Ruan, K.C.; and Liu, W.Y. (1996). A fluorescence-labeling method for sequencing small RNA on polyacrylamide gel. Nucleic Acids Res. 24, 3472-3473.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 3472-3473
-
-
Wu, T.P.1
Ruan, K.C.2
Liu, W.Y.3
|