Rhodococcus canchipurensis sp. nov., an actinomycete isolated from a limestone deposit site

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue 1, 2013, Pages 114-118

  Nimaichand, Salam ^a,b   Sanasam, Suchitra ^b   Zheng, Liu Qiang ^a   Zhu, Wen Yong ^a   Yang, Ling Ling ^a   Tang, Shu Kun ^a   Ningthoujam, Debananda S ^b   Li, Wen Jun ^a,c  

^a YUNNAN UNIVERSITY   (China)

^b MANIPUR UNIVERSITY   (India)

^c XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CARDIOLIPIN; LIMESTONE; MENAQUINONE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLINOSITOL;

ARTICLE; BACTERIAL CELL WALL; BACTERIAL GENE; BACTERIUM ISOLATION; GENE SEQUENCE; GENOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RHODOCOCCUS; RHODOCOCCUS CANCHIPURENSIS;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CALCIUM CARBONATE; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; MYCOLIC ACIDS; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; RHODOCOCCUS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY;

ACTINOBACTERIA; RHODOCOCCUS; RHODOCOCCUS EQUI; RHODOCOCCUS TRIATOMAE;

EID: 84872445226     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.036087-0     Document Type: Article

References (43)

1. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
2. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
3. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
4. Fuhrmann, C., Soedarmanto, I. & Lammler, C. (1997). Studies on the rod-coccus life cycle of Rhodococcus equi. Zentralbl Veterinarmed B 44, 287-294.
5. AL. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1472-1481. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
6. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H. N. (1974). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54-63.
7. Groth, I., Rodríguez, C., Schutze, B., Schmitz, P., Leistner, E. & Goodfellow, M. (2004). Five novel Kitasatospora species from soil: Kitasatospora arboriphila sp. nov., K. gansuensis sp. nov., K. nipponensis sp. nov., K. paranensis sp. nov. and K. terrestris sp. nov. Int J Syst Evol Microbiol 54, 2121-2129.
8. Kelly, K. L. (1964). Inter-Society Color Council-National Bureau of Standards Color-Name Charts Illustrated with Centroid Colors. Washington, DC: US Government Printing Office.
9. Kim, O.-S., Cho, Y.-J., Lee, K., Yoon, S.-H., Kim, M., Na, H., Park, S.-C., Jeon, Y. S., Lee, J.-H., Yi, H., Won, S. & Chun, J. (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
10. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
11. Kluge, A. G. & Farris, F. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
12. Kovacs, N. (1956). Identification of Pseudomonas pyocyanea by the oxidase reaction. Nature 178, 703-704.
13. Kuster, E. & Williams, S. T. (1964). Selection of media for isolation of Streptomyces. Nature 202, 928-929.
14. Lányí, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
15. Larkin, M. J., Kulakov, L. A. & Allen, C. C. R. (2005). Biodegradation and Rhodococcus-masters of catabolic versatility. Curr Opin Biotechnol 16, 282-290.
16. Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A. & other authors (2007). CLUSTAL W and CLUSTAL_X version 2.0. Bioinformatics 23, 2947-2948.
17. Lechevalier, M. P. & Lechevalier, H. A. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
18. Lechevalier, M. P., De Bièvre, C. & Lechevalier, H. A. (1977). Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5, 249-260.
19. Li, W.-J., Xu, P., Schumann, P., Zhang, Y.-Q., Pukall, R., Xu, L.-H., Stackebrandt, E. & Jiang, C.-L. (2007). Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia. Int J Syst Evol Microbiol 57, 1424-1428.
20. Li, J., Zhao, G.-Z., Long, L.-J., Wang, F.-Z., Tian, X.-P., Zhang, S. & Li, W.-J. (2012). Rhodococcus nanhaiensis sp. nov., an actinobacterium isolated from marine sediment. Int J Syst Evol Microbiol 62, 2517-2521.
21. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
22. Minnikin, D. E., Hutchinson, I. G., Caldicott, A. B. & Goodfellow, M. (1980). Thin-layer chromatography of methanolysates of mycolic acid-containing bacteria. J Chromatogr A 188, 221-233.
23. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
24. Ningthoujam, D. S., Kshetri, P., Sanasam, S. & Nimaichand, S. (2009a). Screening, identification of best producers and optimization of extracellular proteases from moderately halophilic alkalithermotolerant indigenous actinomycetes. World Appl Sci J 7, 907-916.
25. Ningthoujam, D., Sanasam, S. & Nimaichand, S. (2009b). A Streptomyces sindenensis strain LS1-128 exhibiting broad spectrum antimicrobial activity. Res J Biol Sci 4, 1085-1091.
26. Ningthoujam, D. S., Sanasam, S., Tamreihao, K. & Nimaichand, S. (2009c). Antagonistic activities of local actinomycete isolates against rice fungal pathogens. Afr J Microbiol Res 3, 737-742.
27. Rainey, F. A., Burghardt, J., Kroppenstedt, R., Klatte, S. & Stackebrandt, E. (1995). Polyphasic evidence for the transfer of Rhodococcus roseus to Rhodococcus rhodochrous. Int J Syst Bacteriol 45, 101-103.
28. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
29. Sanasam, S. & Ningthoujam, D. S. (2010). Screening of local actinomycete isolates in manipur for anticandidal activity. Asian J Biotechnol 2, 139-145.
30. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20, 16.
31. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
32. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, D.C: American Society for Microbiology.
33. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479-491.
34. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
35. Tamaoka, J., Katayama-Fujimura, Y. & Kuraishi, H. (1983). Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Bacteriol 54, 31-36.
36. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
37. Tang, S.-K., Wang, Y., Chen, Y., Lou, K., Cao, L.-L., Xu, L.-H. & Li, W.-J. (2009). Zhihengliuella alba sp. nov., and emended description of the genus Zhihengliuella. Int J Syst Evol Microbiol 59, 2025-2032.
38. Tsukamura, M. (1974). A further numerical taxonomic study of the rhodochrous group. Jpn J Microbiol 18, 37-44.
39. Wang, Y.-X., Wang, H.-B., Zhang, Y.-Q., Xu, L.-H., Jiang, C.-L. & Li, W.-J. (2008). Rhodococcus kunmingensis sp. nov., an actinobacterium isolated from a rhizosphere soil. Int J Syst Evol Microbiol 58, 1467-1471.
40. Wang, Z., Xu, J., Li, Y., Wang, K., Wang, Y., Hong, Q., Li, W.-J. & Li, S.-P. (2010). Rhodococcus jialingiae sp. nov., an actinobacterium isolated from sludge of a carbendazim wastewater treatment facility. Int J Syst Evol Microbiol 60, 378-381.
41. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
42. Zhao, G.-Z., Li, J., Zhu, W.-Y., Tian, S.-Z., Zhao, L.-X., Yang, L.-L., Xu, L.-H. & Li, W.-J. (2012). Rhodococcus artemisiae sp. nov., an endophytic actinobacterium isolated from the pharmaceutical plant Artemisia annua L. Int J Syst Evol Microbiol 62, 900-905.
43. Zopf, W. (1891). Uber Ausscheidung von Fettfarbstoffen (Lipochromen) seitens gewisser Spaltpilze. Ber Dtsch Bot Ges 9, 22-28.