TOR and RAS pathways regulate desiccation tolerance in Saccharomyces cerevisiae

Molecular Biology of the Cell

Volumn 24, Issue 2, 2013, Pages 115-128

  Welch, Aaron Z ^a,b   Gibney, Patrick A ^c   Botstein, David ^c   Koshland, Douglas E ^a,c  

^a JOHNS HOPKINS UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c PRINCETON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMMONIA; CYCLIC AMP; GLUCOSE; PHOSPHATE; RAS PROTEIN; TARGET OF RAPAMYCIN KINASE;

ARTICLE; BIOGENESIS; CELL DENSITY; CELL VIABILITY; CORRELATION ANALYSIS; DESICCATION; FUNGUS CULTURE; FUNGUS GROWTH; HEAT SHOCK; HEAT TOLERANCE; NONHUMAN; OSMOTIC STRESS; OXIDATIVE STRESS; PRIORITY JOURNAL; REGULATORY MECHANISM; RIBOSOME; SACCHAROMYCES CEREVISIAE;

ADAPTATION, PHYSIOLOGICAL; CULTURE MEDIA; CYCLIC AMP-DEPENDENT PROTEIN KINASES; DEHYDRATION; GENE KNOCKOUT TECHNIQUES; PHOSPHATIDYLINOSITOL 3-KINASES; RAS PROTEINS; RIBOSOME SUBUNITS, LARGE, EUKARYOTIC; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SIGNAL TRANSDUCTION; SIROLIMUS; STRESS, PHYSIOLOGICAL; TRANSCRIPTION FACTORS;

SACCHAROMYCES CEREVISIAE;

EID: 84872314860     PISSN: 10591524     EISSN: 19394586     Source Type: Journal    
DOI: 10.1091/mbc.E12-07-0524     Document Type: Article

References (49)

1. Bandhakavi S, Xie H, O'Callaghan B, Sakurai H, Kim DH, Griffin TJ (2008). Hsf1 activation inhibits rapamycin resistance and TOR signaling in yeast revealed by combined proteomic and genetic analysis. PloS One 3, e1598.
2. Berry DB, Gasch AP (2008). Stress-activated genomic expression changes serve a preparative role for impending stress in yeast. Mol Biol Cell 19, 4580-4587.
3. Billi D, Potts M (2002). Life and death of dried prokaryotes. Res Microbiol 153, 7-12. (Pubitemid 34112572)
4. Brauer MJ, Huttenhower C, Airoldi EM, Rosenstein R, Matese JC, Gresham D, Boer VM, Troyanskaya OG, Botstein D (2008). Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast. Mol Biol Cell 19, 352-367. (Pubitemid 351186159)
5. Budovskaya YV, Stephan JS, Reggiori F, Klionsky DJ, Herman PK (2004). The Ras/cAMP-dependent protein kinase signaling pathway regulates an early step of the autophagy process in Saccharomyces cerevisiae. J Biol Chem 279, 20663-20671. (Pubitemid 38656461)
6. Burke D, Dawson D, Stearns T (2000). Methods in Yeast Genetics: A Cold Spring Harbor Laboratory Course Manual, Plainview, NY : Cold Spring Harbor Laboratory Press.
7. Butcher RA, Bhullar BS, Perlstein EO, Marsischky G, LaBaer J, Schreiber SL (2006). Microarray-based method for monitoring yeast overexpression strains reveals small-molecule targets in TOR pathway. Nat Chem Biol 2, 103-109.
8. Calahan D, Dunham M, Desevo C, Koshland DE (2011). Genetic analysis of desiccation tolerance in Saccharomyces cerevisiae. Genetics 189, 507-519.
9. Causton HC, Ren B, Koh SS, Harbison CT, Kanin E, Jennings EG, Lee TI, True HL, Lander ES, Young RA (2001). Remodeling of yeast genome expression in response to environmental changes. Mol Biol Cell 12, 323-337. (Pubitemid 33051578)
10. Chakrabortee S, Boschetti C, Walton LJ, Sarkar S, Rubinsztein DC, Tunnacliffe A (2007). Hydrophilic protein associated with desiccation tolerance exhibits broad protein stabilization function. Proc Natl Acad Sci USA 104, 18073-18078. (Pubitemid 350210822)
11. Chen H, Fink GR (2006). Feedback control of morphogenesis in fungi by aromatic alcohols. Genes Dev 20, 1150-1161.
12. Crowe JH, Hoekstra FA, Crowe LM (1992). Anhydrobiosis. Annu Rev Physiol 54, 579-599.
13. Deprost D, Yao L, Sormani R, Moreau M, Leterreux G, Nicolai M, Bedu M, Robaglia C, Meyer C (2007). The Arabidopsis TOR kinase links plant growth, yield, stress resistance and mRNA translation. EMBO Rep 8, 864-870. (Pubitemid 350001431)
14. Erkut C, Penkov S, Khesbak H, Vorkel D, Verbavatz JM, Fahmy K, Kurzchalia TV (2011). Trehalose renders the dauer larva of Caenorhabditis elegans resistant to extreme desiccation. Curr Biol 21, 1331-1336.
15. Franca MB, Panek AD, Eleutherio EC (2005). The role of cytoplasmic catalase in dehydration tolerance of Saccharomyces cerevisiae. Cell Stress Chaperon 10, 167-170. (Pubitemid 41813363)
16. Gasch AP, Spellman PT, Kao CM, Carmel-Harel O, Eisen MB, Storz G, Botstein D, Brown PO (2000). Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell 11, 4241-4257.
17. Giaever G et al. (2002). Functional profiling of the Saccharomyces cerevisiae genome. Nature 418, 387-391. (Pubitemid 34826834)
18. Hansen M, Taubert S, Crawford D, Libina N, Lee SJ, Kenyon C (2007). Lifespan extension by conditions that inhibit translation in Caenorhabditis elegans. Aging Cell 6, 95-110. (Pubitemid 46140143)
19. Herrero E, Ros J, Belli G, Cabiscol E (2008). Redox control and oxidative stress in yeast cells. Biochim Biophys Acta 1780, 1217-1235.
20. Hickman MJ, Petti AA, Ho-Shing O, Silverman SJ, McIsaac RS, Lee TA, Botstein D (2011). Coordinated regulation of sulfur and phospholipid metabolism reflects the importance of methylation in the growth of yeast. Mol Biol Cell 22, 4192-4204.
21. Hohmann S (2009). Control of high osmolarity signalling in the yeast Saccharomyces cerevisiae. FEBS Lett 583, 4025-4029.
22. Hu Y et al. (2007). Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae. Genome Res 17, 536-543. (Pubitemid 46556458)
23. Jia K, Chen D, Riddle DL (2004). The TOR pathway interacts with the insulin signaling pathway to regulate C. elegans larval development, metabolism and life span. Development 131, 3897-3906. (Pubitemid 39232150)
24. Johnston SD, Enomoto S, Schneper L, McClellan MC, Twu F, Montgomery ND, Haney SA, Broach JR, Berman J (2001). CAC3(MSI1) suppression of RAS2(G19V) is independent of chromatin assembly factor I and mediated by NPR1. Mol Cell Biol 21, 1784-1794. (Pubitemid 32156398)
25. Khandelwal A, Cho SH, Marella H, Sakata Y, Perroud PF, Pan A, Quatrano RS (2010). Role of ABA and ABI3 in desiccation tolerance. Science 327, 546.
26. Li Z et al. (2011). Systematic exploration of essential yeast gene function with temperature-sensitive mutants. Nat Biotechnol 29, 361-367.
27. Lu C, Brauer MJ, Botstein D (2009). Slow growth induces heat-shock resistance in normal and respiratory-deficient yeast. Mol Biol Cell 20, 891-903.
28. Marion RM, Regev A, Segal E, Barash Y, Koller D, Friedman N, O'Shea EK (2004). Sfp1 is a stress- and nutrient-sensitive regulator of ribosomal protein gene expression. Proc Nat Acad Sci USA 101, 14315-14322. (Pubitemid 39346746)
29. Miller MB, Bassler BL (2001). Quorum sensing in bacteria. Annu Rev Microbiol 55, 165-199. (Pubitemid 32978104)
30. Monod J (1950). La technique de culture continue, theorie et applications. Annales Institut Pasteur 79, 390-410.
31. Novick A, Szilard L (1950). Description of the chemostat. Science 112, 715-716.
32. Potts M (1994). Desiccation tolerance of prokaryotes. Microbiol Rev 58, 755-805.
33. Powers S, O'Neill K, Wigler M (1989). Dominant yeast and mammalian RAS mutants that interfere with the CDC25-dependent activation of wild-type RAS in Saccharomyces cerevisiae. Mol Cell Biol 9, 390-395. (Pubitemid 19038848)
34. Ratnakumar S, Hesketh A, Gkargkas K, Wilson M, Rash BM, Hayes A, Tunnacliffe A, Oliver SG (2011). Phenomic and transcriptomic analyses reveal that autophagy plays a major role in desiccation tolerance in Saccharomyces cerevisiae. Mol Biosyst 7, 139-149.
35. Ratnakumar S, Tunnacliffe A (2006). Intracellular trehalose is neither necessary nor sufficient for desiccation tolerance in yeast. FEMS Yeast Res 6, 902-913.
36. Sanchez Y, Lindquist SL (1990). HSP104 required for induced thermotolerance. Science 248, 1112-1115. (Pubitemid 120031537)
37. Singh AB, Harris RC (2005). Autocrine, paracrine and juxtacrine signaling by EGFR ligands. Cell Signal 17, 1183-1193. (Pubitemid 40984037)
38. Sobering AK, Watanabe R, Romeo MJ, Yan BC, Specht CA, Orlean P, Riezman H, Levin DE (2004). Yeast Ras regulates the complex that catalyzes the first step in GPI-anchor biosynthesis at the ER. Cell 117, 637-648. (Pubitemid 38692529)
39. Steffen KK et al. (2008). Yeast life span extension by depletion of 60s ribosomal subunits is mediated by Gcn4. Cell 133, 292-302. (Pubitemid 351508304)
40. Toda T, Cameron S, Sass P, Zoller M, Scott JD, McMullen B, Hurwitz M, Krebs EG, Wigler M (1987). Cloning and characterization of BCY1, a locus encoding a regulatory subunit of the cyclic AMP-dependent protein kinase in Saccharomyces cerevisiae. Mol Cell Biol 7, 1371-1377. (Pubitemid 17045225)
41. Trott A, Shaner L, Morano KA (2005). The molecular chaperone Sse1 and the growth control protein kinase Sch9 collaborate to regulate protein kinase A activity in Saccharomyces cerevisiae. Genetics 170, 1009-1021. (Pubitemid 41105460)
42. Tunnacliffe A, Wise MJ (2007). The continuing conundrum of the LEA proteins. Die Naturwissenschaften 94, 791-812. (Pubitemid 47367664)
43. van Hoek P, van Dijken JP, Pronk JT (1998). Effect of specific growth rate on fermentative capacity of baker's yeast. Appl Environ Microbiol 64, 4226-4233.
44. van Hoek P, van Dijken JP, Pronk JT (2000). Regulation of fermentative capacity and levels of glycolytic enzymes in chemostat cultures of Saccharomyces cerevisiae. Enzyme Microb Technol 26, 724-736.
45. Verghese J, Abrams J, Wang Y, Morano KA (2012). Biology of the heat shock response and protein chaperones: budding yeast (Saccharomyces cerevisiae) as a model system. Microbiol Mol Biol Rev 76, 115-158.
46. Wei M, Fabrizio P, Hu J, Ge H, Cheng C, Li L, Longo VD (2008). Life span extension by calorie restriction depends on Rim15 and transcription factors downstream of Ras/PKA, Tor, and Sch9. PLoS Genet 4, e13.
47. Wei M, Fabrizio P, Madia F, Hu J, Ge H, Li LM, Longo VD (2009). Tor1/Sch9-regulated carbon source substitution is as effective as calorie restriction in life span extension. PLoS Genet 5, e1000467.
48. Zaman S, Lippman SI, Zhao X, Broach JR (2008). How Saccharomyces responds to nutrients. Annu Rev Genet 42, 27-81.
49. Zhu X, Demolis N, Jacquet M, Michaeli T (2000). MSI1 suppresses hyperactive RAS via the cAMP-dependent protein kinase and independently of chromatin assembly factor-1. Curr Genet 38, 60-70. (Pubitemid 30623761)