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Volumn 158, Issue 1, 2013, Pages 113-122

Complete genome sequence analysis of Japanese encephalitis virus isolated from a horse in India

Author keywords

[No Author keywords available]

Indexed keywords

EQUIDAE; JAPANESE ENCEPHALITIS VIRUS;

EID: 84872268396     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-012-1474-9     Document Type: Article
Times cited : (15)

References (44)
  • 1
    • 0030896729 scopus 로고    scopus 로고
    • Antigenic and genetic variations among Japanese encephalitis virus strains belong to genotype 1
    • Ali A, Igarashi A (1997) Antigenic and genetic variations among Japanese encephalitis virus strains belong to genotype 1. Microbiol Immunol 41: 241-252.
    • (1997) Microbiol Immunol , vol.41 , pp. 241-252
    • Ali, A.1    Igarashi, A.2
  • 2
    • 0035168245 scopus 로고    scopus 로고
    • Molecular basis for attenuation of neurovirulence of a yellow fever/Japanese encephalitis virus chimera vaccine (Chimeri Vax-JE)
    • Arroyo J, Guirakhoo F, Fenner S, Zhang ZX, Monath TP, Chambers TJ (2001) Molecular basis for attenuation of neurovirulence of a yellow fever/Japanese encephalitis virus chimera vaccine (Chimeri Vax-JE). J Virol 75: 934-942.
    • (2001) J Virol , vol.75 , pp. 934-942
    • Arroyo, J.1    Guirakhoo, F.2    Fenner, S.3    Zhang, Z.X.4    Monath, T.P.5    Chambers, T.J.6
  • 3
    • 0022472318 scopus 로고
    • The 3′-nucleotides of flavivirus genomic RNA form a conserved secondary structure
    • Brinton MA, Fernandez AV, Dispoto JH (1986) The 3′-nucleotides of flavivirus genomic RNA form a conserved secondary structure. Virology 153: 113-121.
    • (1986) Virology , vol.153 , pp. 113-121
    • Brinton, M.A.1    Fernandez, A.V.2    Dispoto, J.H.3
  • 5
    • 80855133466 scopus 로고    scopus 로고
    • Isolation and molecular characterization of genotype 1 Japanese encephalitis virus, SX09S-01, from pigs in China
    • Cao QS, Li XM, Zhu QY, Wang DD, Chen HC, Qian P (2011) Isolation and molecular characterization of genotype 1 Japanese encephalitis virus, SX09S-01, from pigs in China. Virol J 8: 472.
    • (2011) Virol J , vol.8 , pp. 472
    • Cao, Q.S.1    Li, X.M.2    Zhu, Q.Y.3    Wang, D.D.4    Chen, H.C.5    Qian, P.6
  • 7
    • 0025609214 scopus 로고
    • Genetic variation of Japanese encephalitis virus in nature
    • Chen WR, Tesh RB, Rico-Hesse R (1990) Genetic variation of Japanese encephalitis virus in nature. J Gen Virol 71: 2915-2922.
    • (1990) J Gen Virol , vol.71 , pp. 2915-2922
    • Chen, W.R.1    Tesh, R.B.2    Rico-Hesse, R.3
  • 8
    • 0026651728 scopus 로고
    • A new genotype of Japanese encephalitis virus from Indonesia
    • Chen WR, Rico-Hesse R, Tesh RB (1992) A new genotype of Japanese encephalitis virus from Indonesia. Am J Trop Med Hyg 47: 61-69.
    • (1992) Am J Trop Med Hyg , vol.47 , pp. 61-69
    • Chen, W.R.1    Rico-Hesse, R.2    Tesh, R.B.3
  • 10
    • 70449504004 scopus 로고    scopus 로고
    • Japanese encephalitis-pathological and clinical perspective
    • Ghosh D, Basu A (2009) Japanese encephalitis-pathological and clinical perspective. PLoS Negl Trop Dis 3: e437.
    • (2009) PLoS Negl Trop Dis , vol.3
    • Ghosh, D.1    Basu, A.2
  • 11
  • 12
    • 84863843220 scopus 로고    scopus 로고
    • Isolation and genetic characterization of Japanese encephalitis virus from equines in India
    • Gulati BR, Singha H, Singh BK, Virmani N, Kumar S, Singh RK (2012) Isolation and genetic characterization of Japanese encephalitis virus from equines in India. J Vet Sci 13: 111-118.
    • (2012) J Vet Sci , vol.13 , pp. 111-118
    • Gulati, B.R.1    Singha, H.2    Singh, B.K.3    Virmani, N.4    Kumar, S.5    Singh, R.K.6
  • 15
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 16
    • 0033567326 scopus 로고    scopus 로고
    • Prediction of three-dimensional structure and mapping of conformational epitopes of envelope glycoprotein of Japanese encephalitis virus
    • Kolaskar AS, Kulkarni-Kale U (1999) Prediction of three-dimensional structure and mapping of conformational epitopes of envelope glycoprotein of Japanese encephalitis virus. Virology 261: 31-42.
    • (1999) Virology , vol.261 , pp. 31-42
    • Kolaskar, A.S.1    Kulkarni-Kale, U.2
  • 19
    • 0025289724 scopus 로고
    • Host cell selection of Murray Valley encephalitis variants altered at an RGD sequence in the envelope protein and in mouse virulence
    • Lobigs M, Usha R, Nestorowicz A, Marshall ID, Weir RC, Dalgarno L (1990) Host cell selection of Murray Valley encephalitis variants altered at an RGD sequence in the envelope protein and in mouse virulence. Virology 176: 587-595.
    • (1990) Virology , vol.176 , pp. 587-595
    • Lobigs, M.1    Usha, R.2    Nestorowicz, A.3    Marshall, I.D.4    Weir, R.C.5    Dalgarno, L.6
  • 20
    • 0032905445 scopus 로고    scopus 로고
    • Molecular characterization of the Japanese encephalitis virus representative immunotype strain JaGAr01
    • Mangada MNM, Takegami T (1999) Molecular characterization of the Japanese encephalitis virus representative immunotype strain JaGAr01. Virus Res 59: 101-112.
    • (1999) Virus Res , vol.59 , pp. 101-112
    • Mangada, M.N.M.1    Takegami, T.2
  • 21
    • 0030698026 scopus 로고    scopus 로고
    • The molecular basis of virulence of the encephalitogenic flaviviruses
    • McMinn PC (1997) The molecular basis of virulence of the encephalitogenic flaviviruses. J Gen Virol 78: 2711-2722.
    • (1997) J Gen Virol , vol.78 , pp. 2711-2722
    • McMinn, P.C.1
  • 22
    • 0030425940 scopus 로고    scopus 로고
    • Envelope gene sequence variation among Japanese encephalitis viruses isolated in Korea
    • Nam JH, Chung YJ, Ban SJ, Kim EJ, Park YK, Cho HW (1996) Envelope gene sequence variation among Japanese encephalitis viruses isolated in Korea. Acta Virol 40: 303-309.
    • (1996) Acta Virol , vol.40 , pp. 303-309
    • Nam, J.H.1    Chung, Y.J.2    Ban, S.J.3    Kim, E.J.4    Park, Y.K.5    Cho, H.W.6
  • 23
    • 0034753872 scopus 로고    scopus 로고
    • Short report: genetic heterogeneity of Japanese encephalitis virus assessed via analysis of the full-length genome sequence of a Korean isolate
    • Nam JH, Chae SL, Won SY, Kim EJ, Yoon KS, Kim BI, Jeong YS, Cho HW (2001) Short report: genetic heterogeneity of Japanese encephalitis virus assessed via analysis of the full-length genome sequence of a Korean isolate. Am J Trop Med Hyg 65: 388-392.
    • (2001) Am J Trop Med Hyg , vol.65 , pp. 388-392
    • Nam, J.H.1    Chae, S.L.2    Won, S.Y.3    Kim, E.J.4    Yoon, K.S.5    Kim, B.I.6    Jeong, Y.S.7    Cho, H.W.8
  • 24
    • 0036122732 scopus 로고    scopus 로고
    • High level of sequence variation in the 3′ noncoding region of Japanese encephalitis viruses isolated in Korea
    • Nam JH, Chae SL, Park SH, Jeong YS, Joo MS, Kang CY, Cho HW (2002) High level of sequence variation in the 3′ noncoding region of Japanese encephalitis viruses isolated in Korea. Virus Genes 24: 21-27.
    • (2002) Virus Genes , vol.24 , pp. 21-27
    • Nam, J.H.1    Chae, S.L.2    Park, S.H.3    Jeong, Y.S.4    Joo, M.S.5    Kang, C.Y.6    Cho, H.W.7
  • 25
    • 0028893995 scopus 로고
    • Nucleotide and deduced amino acid sequence of the structural protein genes of Japanese encephalitis viruses from different geographical locations
    • Ni H, Barrett AD (1995) Nucleotide and deduced amino acid sequence of the structural protein genes of Japanese encephalitis viruses from different geographical locations. J Gen Virol 76: 401-407.
    • (1995) J Gen Virol , vol.76 , pp. 401-407
    • Ni, H.1    Barrett, A.D.2
  • 26
    • 0028798804 scopus 로고
    • Molecular basis of attenuation of neurovirulence of wild-type Japanese encephalitis virus strain SA14
    • Ni H, Chang GJ, Xie H, Trent DW, Barrett AD (1995) Molecular basis of attenuation of neurovirulence of wild-type Japanese encephalitis virus strain SA14. J Gen Virol 76: 409-413.
    • (1995) J Gen Virol , vol.76 , pp. 409-413
    • Ni, H.1    Chang, G.J.2    Xie, H.3    Trent, D.W.4    Barrett, A.D.5
  • 27
    • 0030005490 scopus 로고    scopus 로고
    • Phylogenetic analysis of the envelope gene of Japanese encephalitis virus
    • Paranjpe S, Banerjee K (1996) Phylogenetic analysis of the envelope gene of Japanese encephalitis virus. Virus Res 42: 107-117.
    • (1996) Virus Res , vol.42 , pp. 107-117
    • Paranjpe, S.1    Banerjee, K.2
  • 29
    • 0029014434 scopus 로고
    • The envelope glycoprotein from tick-borne encephalitis virus at 2 A resolution
    • Rey FA, Hein FX, Mandl C, Kunz C, Harrison SC (1995) The envelope glycoprotein from tick-borne encephalitis virus at 2 A resolution. Nature 375: 291-298.
    • (1995) Nature , vol.375 , pp. 291-298
    • Rey, F.A.1    Hein, F.X.2    Mandl, C.3    Kunz, C.4    Harrison, S.C.5
  • 30
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 31
    • 58149157923 scopus 로고    scopus 로고
    • Preventive strategies for frequent outbreaks of Japanese encephalitis in Northern India
    • Saxena V, Dhole TN (2008) Preventive strategies for frequent outbreaks of Japanese encephalitis in Northern India. J Biosci 33: 505-514.
    • (2008) J Biosci , vol.33 , pp. 505-514
    • Saxena, V.1    Dhole, T.N.2
  • 35
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 37
    • 67649230014 scopus 로고    scopus 로고
    • La protein binds the predicted loop structures in the 3′ non-coding region of Japanese encephalitis virus genome: role in virus replication
    • Vashist S, Anantpadma M, Sharma H, Vrati S (2009) La protein binds the predicted loop structures in the 3′ non-coding region of Japanese encephalitis virus genome: role in virus replication. J Gen Virol 90: 1343-1352.
    • (2009) J Gen Virol , vol.90 , pp. 1343-1352
    • Vashist, S.1    Anantpadma, M.2    Sharma, H.3    Vrati, S.4
  • 38
    • 0001107378 scopus 로고    scopus 로고
    • Taxonomy and evolutionary relationships of flaviviruses
    • D. J. Gubler and G. Kuno (Eds.), Wallingford: CAB International
    • Westaway EG, Blok J (1997) Taxonomy and evolutionary relationships of flaviviruses. In: Gubler DJ, Kuno G (eds) Dengue and Dengue Haemorrhagic Fever. CAB International, Wallingford, pp 147-173.
    • (1997) Dengue and Dengue Haemorrhagic Fever , pp. 147-173
    • Westaway, E.G.1    Blok, J.2
  • 39
    • 0033799517 scopus 로고    scopus 로고
    • Molecular characterization of the first Australian isolate of Japanese encephalitis virus, the FU strain
    • Williams DT, Wang LF, Daniels PW, Mackenzie JS (2000) Molecular characterization of the first Australian isolate of Japanese encephalitis virus, the FU strain. J Gen Virol 81: 2471-2480.
    • (2000) J Gen Virol , vol.81 , pp. 2471-2480
    • Williams, D.T.1    Wang, L.F.2    Daniels, P.W.3    Mackenzie, J.S.4
  • 40
    • 79959302591 scopus 로고    scopus 로고
    • An amino acid substitution (V3I) in the Japanese encephalitis virus NS4A protein increases its virulence in mice, but not its growth rate in vitro
    • Yamaguchi Y, Nukui Y, Tajima S, Nerome R, Kato F, Watanabe H, Takasaki T, Kurane I (2011) An amino acid substitution (V3I) in the Japanese encephalitis virus NS4A protein increases its virulence in mice, but not its growth rate in vitro. J Gen Virol 92: 1601-1606.
    • (2011) J Gen Virol , vol.92 , pp. 1601-1606
    • Yamaguchi, Y.1    Nukui, Y.2    Tajima, S.3    Nerome, R.4    Kato, F.5    Watanabe, H.6    Takasaki, T.7    Kurane, I.8
  • 41
    • 40849130890 scopus 로고    scopus 로고
    • Crystal structure of the catalytic domain of Japanese encephalitis virus NS3 helicase/nucleoside triphosphatase at a resolution of 1.8 A
    • Yamashita T, Unno H, Mori Y, Tani H, Moriishi K, Takamizawa A, Agoh M, Tsukihara T, Matsuura Y (2008) Crystal structure of the catalytic domain of Japanese encephalitis virus NS3 helicase/nucleoside triphosphatase at a resolution of 1. 8 A. Virology 373: 426-436.
    • (2008) Virology , vol.373 , pp. 426-436
    • Yamashita, T.1    Unno, H.2    Mori, Y.3    Tani, H.4    Moriishi, K.5    Takamizawa, A.6    Agoh, M.7    Tsukihara, T.8    Matsuura, Y.9
  • 42
    • 10944240352 scopus 로고    scopus 로고
    • Molecular characterization of full-length genome of Japanese encephalitis virus (KV1899) isolated from pigs in Korea
    • Yang DK, Kim BH, Kweon CH, Kwon JH, Lim SI, Han HR (2004) Molecular characterization of full-length genome of Japanese encephalitis virus (KV1899) isolated from pigs in Korea. J Vet Sci 5: 197-205.
    • (2004) J Vet Sci , vol.5 , pp. 197-205
    • Yang, D.K.1    Kim, B.H.2    Kweon, C.H.3    Kwon, J.H.4    Lim, S.I.5    Han, H.R.6
  • 43
    • 0033585015 scopus 로고    scopus 로고
    • A novel in vitro replication system for dengue virus. Initiation of RNA synthesis at the 3′-end of exogenous viral RNA templates requires 5′- and 3′-terminal complementary sequence motifs of the viral RNA
    • You S, Padmanabhan R (1999) A novel in vitro replication system for dengue virus. Initiation of RNA synthesis at the 3′-end of exogenous viral RNA templates requires 5′- and 3′-terminal complementary sequence motifs of the viral RNA. J Biol Chem 274: 33714-33722.
    • (1999) J Biol Chem , vol.274 , pp. 33714-33722
    • You, S.1    Padmanabhan, R.2
  • 44
    • 0142028114 scopus 로고    scopus 로고
    • Molecular characterization of the full-length genome of the Japanese encephalitis viral strain K87P39
    • Yun SI, Kim SY, Choi WY, Nam JH, Ju YR, Park KY, Cho HW, Lee YM (2003) Molecular characterization of the full-length genome of the Japanese encephalitis viral strain K87P39. Virus Res 96: 129-140.
    • (2003) Virus Res , vol.96 , pp. 129-140
    • Yun, S.I.1    Kim, S.Y.2    Choi, W.Y.3    Nam, J.H.4    Ju, Y.R.5    Park, K.Y.6    Cho, H.W.7    Lee, Y.M.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.