Is L-arabinose important for the endophytic lifestyle of Pseudomonas spp.?

Archives of Microbiology

Volumn 195, Issue 1, 2013, Pages 9-17

  Malfanova, Natalia ^a,b   Kamilova, Faina ^a,c   Validov, Shamil ^a,d   Chebotar, Vladimir ^b   Lugtenberg, Ben ^a  

^a LEIDEN UNIVERSITY   (Netherlands)

^b ALL RUSSIA RESEARCH INSTITUTE FOR AGRICULTURAL MICROBIOLOGY   (Russian Federation)

^c Koppert Biological Systems   (Netherlands)

^d Federal Centre of Toxicology   (Russian Federation)

Author keywords

Biocontrol; BIOLOG; Endophytic; Pseudomonas

Indexed keywords

2,3 BUTANEDIOL; ARABINOSE; DNA 16S;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CARBON SOURCE; COMPARATIVE STUDY; CUCUMBER; ENDOPHYTE; NONHUMAN; OXIDATION; PLANT ROOT; PLANT STEM; PRIORITY JOURNAL; PROTEOBACTERIA; PSEUDOMONADALES; PSEUDOMONAS FLUORESCENS; PSEUDOMONAS PUTIDA; RHIZOSPHERE BACTERIUM; ROOT ROT; TOMATO;

ARABINOSE; BUTYLENE GLYCOLS; CUCUMIS SATIVUS; ENDOPHYTES; HUMANS; PLANT ROOTS; PSEUDOMONAS; PSEUDOMONAS FLUORESCENS; RHIZOSPHERE; RNA, RIBOSOMAL, 16S;

CUCUMIS SATIVUS; LYCOPERSICON ESCULENTUM; PSEUDOMONAS; PSEUDOMONAS FLUORESCENS; PSEUDOMONAS PUTIDA;

EID: 84872266109     PISSN: 03028933     EISSN: 1432072X     Source Type: Journal    
DOI: 10.1007/s00203-012-0842-x     Document Type: Article

References (37)

1. Anonymous (1998) Sichere Biotechnologie. Eingruppierung biologischer Agenzien: Bacterien, BG Chemie, Merkblatt B 006 8/98 ZH 1/346. Heidelberg, Germany: Jedermann-Verlag Dr Otto Pfeffer oHG
2. Bacon CW, Hinton DM (2006) Bacterial endophytes: the endophytic niche, its occupants, and its utility. In: Gnanamanickam SS (ed) Plant-associated bacteria. Springer, The Netherlands, pp 155-194
3. Belimov AA, Hontzeas N, Safronova VI, Demchinskaya SV, Piluzza G, Bullitta S, Glick BR (2005) Cadmium-tolerant plant growth-promoting bacteria associated with the roots of Indian mustard (Brassica juncea L. Czern.). Soil Biol Biochem 37:241-250
4. Berg G, Hallmann J (2006) Control of plant pathogenic fungi with bacterial endophytes. In: Schulz B, Boyle C, Sieber T (eds) Microbial root endophytes. Springer, Berlin, pp 53-69
5. Berg G, Krechel A, Ditz M, Sikora RA, Ulrich A, Hallmann J (2005) Endophytic and ectophytic potato-associated bacterial communities differ in structure and antagonistic function against plant pathogenic fungi. FEMS Microbiol Ecol 51:215-229
6. Cho S, Lim W, Hong S et al (2003) Endophytic colonization of balloon flower by antifungal strain Bacillus sp. CY22. Biosci Biotech Biochem 67:2132-2138
7. Compant S, Clément C, Sessitsch A (2010) Plant growth-promoting bacteria in the rhizo- and endosphere of plants: their role, colonization, mechanisms involved and prospects for utilization. Soil Biol Biochem 42:669-678
8. Downing K, Thomson J (2000) Introduction of the Serratia marcescens chiA gene into an endophytic Pseudomonas fluorescens for the biocontrol of phytopathogenic fungi. Can J Microbiol 46: 363-369
9. Egamberdiyeva D, Kamilova F, Validov S, Gafurova L, Kucharova Z, Lugtenberg B (2008) High incidence of plant growth-stimulating bacteria associated with the rhizosphere of wheat grown in salinated soil in Uzbekistan. Environ Microbiol 10:1-9
10. Frankenberger WT, Chang AC, Arshad M (1990) Response of Raphanus sativus to the auxin precursor, L-tryptophan applied to soil. Plant Soil 129:235-241
11. Glick BR (2005) Modulation of plant ethylene levels by the bacterial enzyme ACC deaminase. FEMS Microbiol Lett 251:1-7
12. Hardoim PR, van Overbeek LS, Elsas JD (2008) Properties of bacterial endophytes and their proposed role in plant growth. Trends Microbiol 16:463-471
13. Iwai H, Usui M, Hoshino H, Kamada H, Matsunaga T, Kakegawa K, Ishii T, Satoh S (2003) Analysis of sugars in squash xylem sap. Plant Cell Physiol 44:582-587
14. Kamilova F, Validov S, Azarova T, Mulders I, Lugtenberg B (2005) Enrichment for enhanced competitive root tip colonizers selects for a new class of biocontrol bacteria. Environ Microbiol 7:1809-1817
15. Kamilova F, Kravchenko LV, Shaposhnikov AI, Azarova T, Makarova N, Lugtenberg BJJ (2006) Organic acids, sugars, and L-tryptophane in exudates of vegetables growing on stonewool and their effects on activities of rhizosphere bacteria. Mol Plant Microbe Interact 19:250-256
16. Kravchenko LV, Azarova TS, Makarova NM, Tikhonovich IA (2004) The Effect of tryptophan present in plant root exudates on the phytostimulating activity of rhizobacteria. Microbiology 73: 156-158
17. Long HH, Schmidt DD, Baldwin IT (2008) Native bacterial endophytes promote host growth in a species-specific manner; phytohormone manipulations do not result in common growth responses. PLoS ONE 3:e2702
18. Lopez BR, Bashan Y, Bacilio M (2011) Endophytic bacteria of Mammillaria fraileana, an endemic rock-colonizing cactus of the southern Sonoran Desert. Arch Microbiol 193:527-541
19. Lugtenberg B, Kamilova F (2009) Plant-growth-promoting rhizobacteria. Ann Rev Microbiol 63:541-556
20. Malfanova N, Kamilova F, Validov S, Shcherbakov A, Chebotar V, Tikhonovich I, Lugtenberg B (2011) Characterization of Bacillus subtilis HC8, a novel plant-beneficial endophytic strain from giant hogweed. Microb Biotech 4:523-532
21. Mercado-Blanco J, Bakker PAHM (2007) Interactions between plants and beneficial Pseudomonas spp.: exploiting bacterial traits for crop protection. Antonie Van Leeuwenhoek 92:367-389
22. Pedraza RO (2008) Recent advances in nitrogen-fixing acetic acid bacteria. Int J Food Microbiol 125:25-35
23. Prakamhang J, Minamisawa K, Teamtaisong K, Boonkerd N, Teaumroong N (2009) The communities of endophytic diazotrophic bacteria in cultivated rice (Oryza sativa L.). Appl Soil Ecol 42:141-149
24. Ramesh R, Joshi AA, Ghanekar MP (2008) Pseudomonads: major antagonistic endophytic bacteria to suppress bacterial wilt pathogen, Ralstonia solanacearum in the eggplant (Solanum melongena L.). World J Microbiol Biotechnol 25:47-55
25. Ryu CM, Farag MA, Hu CH, Reddy MS, Wei HX, Pare PW, Kloepper JW (2003) Bacterial volatiles promote growth in Arabidopsis. Proc Natl Acad Science (USA) 100:4927-4932
26. Sgroy V, Cassán F, Masciarelli O, Del Papa MF, Lagares A, Luna V (2009) Isolation and characterization of endophytic plant growth-promoting (PGPB) or stress homeostasis-regulating (PSHB) bacteria associated to the halophyte Prosopis strombulifera. Appl Microbiol Biotech 85:371-381
27. Simons M, van der Bij AJ, Brand I, de Weger LA, Wijffelman CA, Lugtenberg BJJ (1996) Gnotobiotic system for studying rhizosphere colonization by plant growth-promoting Pseudomonas bacteria. Mol Plant Microbe Interact 9:600-607
28. Spaepen S, Dobbelaere S, Croonenborghs A, Vanderleyden J (2008) Effects of Azospirillum brasilense indole-3-acetic acid production on inoculated wheat plants. Plant Soil 312:15-23
29. Spaepen S, Vanderleyden J, Okon Y (2009) Plant Growth-promoting actions of rhizobacteria. In: van Loon LC (ed) Plant innate immunity. Elsevier, Amsterdam, pp 283-320
30. Strobel G (2006) Muscodor albus and its biological promise. J Indust Microbiol Biotech 33:514-522
31. Sun Y, Cheng Z, Glick BR (2009) The presence of a 1-aminocyclopropane-1- carboxylate (ACC) deaminase deletion mutation alters the physiology of the endophytic plant growth-promoting bacterium Burkholderia phytofirmans PsJN. FEMS Microbiol Lett 296:131-136
32. Taurian T, Anzuay MS, Angelini JG, Tonelli ML, Ludueña L, Pena D, Ibáñez F, Fabra A (2009) Phosphate-solubilizing peanut associated bacteria: screening for plant growth-promoting activities. Plant Soil 329:421-431
33. Validov S, Kamilova F, Qi S, Stephan D, Wang JJ, Makarova N, Lugtenberg B (2007) Selection of bacteria able to control Fusarium oxysporum f. sp. radicis lycopersici in stonewool substrate. J Appl Microbiol 102:461-471
34. Validov SZ, Kamilova F, Lugtenberg BJJ (2009) Pseudomonas putida strain PCL1760 controls tomato foot and root rot in stonewool under industrial conditions in a certified greenhouse. Biol Control 48:6-11
35. Van Wees SCM, Van der Ent S, Pieterse CMJ (2008) Plant immune responses triggered by beneficial microbes. Curr Opin Plant Biol 11:443-448
36. Yasuda M, Isawa T, Shinozaki S, Minamisawa K, Nakashita H (2009) Effects of colonization of a bacterial endophyte, Azospirillum sp. B510, on disease resistance in rice. Biosci Biotech Biochem 73:2595-2599
37. You M, Nishiguchi T, Saito A, Isawa T, Mitsui H, Minamisawa K (2005) Expression of the nifH gene of a Herbaspirillum endophyte in wild rice species: daily rhythm during the light- dark cycle. Appl Environ Microbiol 71:8183-8190