메뉴 건너뛰기




Volumn 8, Issue 1, 2013, Pages

Using graph models to find transcription factor modules: The hitting set problem and an exact algorithm

Author keywords

[No Author keywords available]

Indexed keywords


EID: 84872200223     PISSN: None     EISSN: 17487188     Source Type: Journal    
DOI: 10.1186/1748-7188-8-2     Document Type: Article
Times cited : (2)

References (14)
  • 1
    • 0037443976 scopus 로고    scopus 로고
    • Toucan: Deciphering the cis-regulatory logic of coregulated genes
    • 10.1093/nar/gkg268, 152870, 12626717
    • Aerts S, Thijs G, Coessens B, Staes M, Moreau Y, Moor B. Toucan: Deciphering the cis-regulatory logic of coregulated genes. Nucleic Acids Res 2003, 31:1753-1764. 10.1093/nar/gkg268, 152870, 12626717.
    • (2003) Nucleic Acids Res , vol.31 , pp. 1753-1764
    • Aerts, S.1    Thijs, G.2    Coessens, B.3    Staes, M.4    Moreau, Y.5    Moor, B.6
  • 2
    • 33644674789 scopus 로고    scopus 로고
    • A systematic model to predict transcriptional regulatory mechanisms based on overrepresentation of transcription factor binding profiles
    • 10.1101/gr.4303406, 1415218, 16449500
    • Chang L, Nagarajan R, Magee J, Milbrandt J, Stormo G. A systematic model to predict transcriptional regulatory mechanisms based on overrepresentation of transcription factor binding profiles. Genome Res 2006, 16:405-413. 10.1101/gr.4303406, 1415218, 16449500.
    • (2006) Genome Res , vol.16 , pp. 405-413
    • Chang, L.1    Nagarajan, R.2    Magee, J.3    Milbrandt, J.4    Stormo, G.5
  • 3
    • 15944429669 scopus 로고    scopus 로고
    • Expression-based monitoring of transcription factor activity: The TELiS database
    • 10.1093/bioinformatics/bti038, 15374858
    • Cole S, Yan W, Galic Z, Arevalo J, Zack J. Expression-based monitoring of transcription factor activity: The TELiS database. Bioinformatics 2005, 21:803-810. 10.1093/bioinformatics/bti038, 15374858.
    • (2005) Bioinformatics , vol.21 , pp. 803-810
    • Cole, S.1    Yan, W.2    Galic, Z.3    Arevalo, J.4    Zack, J.5
  • 4
    • 20144370200 scopus 로고    scopus 로고
    • OPOSSUM: Identification of overrepresented transcription factor binding sites in co-expressed genes
    • 10.1093/nar/gki624, 1142402, 15933209, Wasserman
    • Sui S, Mortimer J, Arenillas D, Brumm J, Walsh C, Kennedy B, Wasserman oPOSSUM: Identification of overrepresented transcription factor binding sites in co-expressed genes. Nucleic Acids Res 2005, 33:3154-3164. 10.1093/nar/gki624, 1142402, 15933209, Wasserman.
    • (2005) Nucleic Acids Res , vol.33 , pp. 3154-3164
    • Sui, S.1    Mortimer, J.2    Arenillas, D.3    Brumm, J.4    Walsh, C.5    Kennedy, B.6
  • 5
    • 48349124629 scopus 로고    scopus 로고
    • MOPAT: a graph-based method to predict recurrent cis-regulatory modules from known motifs
    • 10.1093/nar/gkn407, 2490743, 18606616
    • Hu J, Hu H, Li X. MOPAT: a graph-based method to predict recurrent cis-regulatory modules from known motifs. Nucleic Acids Res 2008, 36:4488-497. 10.1093/nar/gkn407, 2490743, 18606616.
    • (2008) Nucleic Acids Res , vol.36 , pp. 4488-4497
    • Hu, J.1    Hu, H.2    Li, X.3
  • 6
    • 69249175210 scopus 로고    scopus 로고
    • Computational methods for the detection of cis-regulatory modules
    • Loo P, Marynen P. Computational methods for the detection of cis-regulatory modules. Briefings Bioinf 2009, 10:509-524.
    • (2009) Briefings Bioinf , vol.10 , pp. 509-524
    • Loo, P.1    Marynen, P.2
  • 7
    • 4344607122 scopus 로고    scopus 로고
    • CisModule: De novo discovery of cis-regulatory modules by hierarchical mixture modeling
    • Zhou Q, Wong W. CisModule: De novo discovery of cis-regulatory modules by hierarchical mixture modeling. Proc of Nat Acad Sci 2004, 101:12114-12119.
    • (2004) Proc of Nat Acad Sci , vol.101 , pp. 12114-12119
    • Zhou, Q.1    Wong, W.2
  • 9
    • 70350452746 scopus 로고    scopus 로고
    • Integrating Proteomic, Transcriptional, and Interactome Data Reveals Hidden Components of Signaling and Regulatory Networks
    • Huang S, Fraenkel E. Integrating Proteomic, Transcriptional, and Interactome Data Reveals Hidden Components of Signaling and Regulatory Networks. Sci Signaling 2009, 2:Ra40.
    • (2009) Sci Signaling , vol.2
    • Huang, S.1    Fraenkel, E.2
  • 12
    • 77953288529 scopus 로고    scopus 로고
    • Dynamic programming based algorithms for set multicover and multiset multicover problems
    • Hua Q, Yu D, Lau F, Wang Y. Dynamic programming based algorithms for set multicover and multiset multicover problems. Theor Comput Sci 2010, 411:2467-2474.
    • (2010) Theor Comput Sci , vol.411 , pp. 2467-2474
    • Hua, Q.1    Yu, D.2    Lau, F.3    Wang, Y.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.