Combinational usage of next generation sequencing and qPCR for the analysis of tumor samples

Methods

Volumn 59, Issue 1, 2013, Pages 126-131

  Loewe, Robert P ^a  

^a GeneWake GmbH   (Germany)

Author keywords

CNV; Next generation sequencing; NGS; Oncology; QPCR; RNA Seq

Indexed keywords

ARTICLE; MUTATION; NEOPLASM; NEXT GENERATION SEQUENCING; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; REPRODUCIBILITY; RNA SEQUENCE; SAMPLE; SEQUENCE ANALYSIS; WORKFLOW;

DNA MUTATIONAL ANALYSIS; GENE LIBRARY; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; NEOPLASMS; QUALITY CONTROL; REAL-TIME POLYMERASE CHAIN REACTION; RNA, MESSENGER; SEQUENCE ANALYSIS, RNA;

EID: 84872187222     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2012.11.002     Document Type: Article

References (17)

1. Rizzo J.M., Buck M.J. Cancer Prev. Res. 2012, 5:887-900.
2. Huang Q., Lin B., Liu H., Ma X., Mo F., Yu W., Li L., Li H., Tian T., Wu D., Shen F., Xing J., Chen Z.N. PLoS ONE 2011, 6:e26168.
3. Kalari K.R., Rossell D., Necela B.M., Asmann Y.W., Nair A., Baheti S., Kachergus J.M., Younkin C.S., Baker T., Carr J.M., Tang X., Walsh M.P., Chai H.S., Sun Z., Hart S.N., Leontovich A.A., Hossain A., Kocher J.P., Perez E.A., Reisman D.N., Fields A.P., Thompson E.A. Front. Oncol. 2012, 2. (Epub 2012 Feb 10).
4. Durante C., Tallini G., Puxeddu E., Sponziello M., Moretti S., Ligorio C., Cavaliere A., Rhoden K.J., Verrienti A., Maranghi M., Giacomelli L., Russo D., Filetti S. Eur. J. Endocrinol. 2011, 165:455-463. (Epub 2011 Jun 8).
5. Gong W., Zhang X., Wu J., Chen L., Li L., Sun J., Lv Y., Wei X., Du Y., Jin H., Dong J. Lung Cancer 2012, 75:374-380. (Epub 2011 Sep 1).
6. Olaussen K.A., Dunant A., Fouret P., Brambilla E., André F., Haddad V., Taranchon E., Filipits M., Pirker R., Popper H.H., Stahel R., Sabatier L., Pignon J.P., Tursz T., Le Chevalier T., Soria J.C. N. Engl. J. Med. 2006, 355:983-991.
7. Girard N. Lancet Oncol. 2012, 13:962-963.
8. Tuch B.B., Laborde R.R., Xu X., Gu J., Chung C.B., Monighetti C.K., Stanley S.J., Olsen K.D., Kasperbauer J.L., Moore E.J., Broomer A.J., Tan R., Brzoska P.M., Muller M.W., Siddiqui A.S., Asmann Y.W., Sun Y., Kuersten S., Barker M.A., De La Vega F.M., Smith D.I. PLoS ONE 2010, 5:e9317.
9. Nagumo Y., Faratian D., Mullen P., Harrison D.J., Hasmann M., Langdon SP S.P. Mol. Cancer Res. 2009, 7:1563-1571. (Epub 2009 Sep 8).
10. Murakami T., Kawada K., Iwamoto M., Akagami M., Hida K., Nakanishi Y., Kanda K., Kawada M., Seno H., Taketo M.M., Sakai Y. Int. J. Cancer 2012, (Epub ahead of print).
11. Yuasa T., Yamamoto S., Urakami S., Fukui I., Yonese J. Onco. Targets Ther. 2012, 5:221-229. (Epub 2012 Sep 21).
12. Turashvili G., Yang W., McKinney S., Kalloger S., Gale N., Ng Y., Chow K., Bell L., Lorette J., Carrier M., Luk M., Aparicio S., Huntsman D., Yip S. Exp. Mol. Pathol. 2012, 92:33-43.
13. Lin H.S., Berry G.J., Fee W.E., Terris D.J., Sun Z. Arch. Otolaryngol. Head Neck Surg. 2004, 130:311-316.
14. Zheng Z., Advani A., Melefors O., Glavas S., Nordström H., Ye W., Engstrand L., Andersson A.F. Nucleic Acids Res. 2010, 38:e137.
15. Magi A., Tattini L., Pippucci T., Torricelli F., Benelli M. Bioinformatics 2012, 28:470-478.
16. D́haene B., Vandesompele J., Hellemans J. Methods 2010, 50:262-270.
17. Loewe R.P. Laborwelt 2011, 12:38-39.