-
1
-
-
67349262454
-
Tissue tectonics: morphogenetic strain rates, cell shape change and intercalation
-
Blanchard GB, Kabla AJ, Schultz NL, Butler LC, Sanson B, et al. (2009) Tissue tectonics: morphogenetic strain rates, cell shape change and intercalation. Nature Methods 6: 458-464.
-
(2009)
Nature Methods
, vol.6
, pp. 458-464
-
-
Blanchard, G.B.1
Kabla, A.J.2
Schultz, N.L.3
Butler, L.C.4
Sanson, B.5
-
2
-
-
82455162540
-
Microscopy to mechanism across the scales of development
-
Megason SG, Srinivas S, Dickinson ME, Hadjantonakis AK, (2011) Microscopy to mechanism across the scales of development. Current Opinion in Genetics & Development 21: 519-522.
-
(2011)
Current Opinion in Genetics & Development
, vol.21
, pp. 519-522
-
-
Megason, S.G.1
Srinivas, S.2
Dickinson, M.E.3
Hadjantonakis, A.K.4
-
3
-
-
0242580739
-
Digitizing life at the level of the cell: high-performance laserscanning microscopy and image analysis for in toto imaging of development
-
Megason SG, Fraser SE, (2003) Digitizing life at the level of the cell: high-performance laserscanning microscopy and image analysis for in toto imaging of development. Mechanisms of Development 120: 1407-1420.
-
(2003)
Mechanisms of Development
, vol.120
, pp. 1407-1420
-
-
Megason, S.G.1
Fraser, S.E.2
-
4
-
-
34548281030
-
Imaging in systems biology
-
Megason SG, Fraser SE, (2007) Imaging in systems biology. Cell 130: 784-795.
-
(2007)
Cell
, vol.130
, pp. 784-795
-
-
Megason, S.G.1
Fraser, S.E.2
-
5
-
-
56449123775
-
Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy
-
Keller P, Schmidt A, Wittbrodt J, Stelzer E, (2008) Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy. Science 322: 1065-1069.
-
(2008)
Science
, vol.322
, pp. 1065-1069
-
-
Keller, P.1
Schmidt, A.2
Wittbrodt, J.3
Stelzer, E.4
-
6
-
-
77955907211
-
Cell lineage reconstruction of early zebrafish embryos using label-free nonlinear microscopy
-
Olivier N, Luengo-Oroz MA, Duloquin L, Faure E, Savy T, et al. (2010) Cell lineage reconstruction of early zebrafish embryos using label-free nonlinear microscopy. Science 20 329: 967-971.
-
(2010)
Science
, vol.20
, Issue.329
, pp. 967-971
-
-
Olivier, N.1
Luengo-Oroz, M.A.2
Duloquin, L.3
Faure, E.4
Savy, T.5
-
7
-
-
77954705109
-
Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution
-
Fernandez R, Das P, Mirabet V, Moscardi E, Traas J, et al. (2010) Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution. Nature Methods 7: 547-553.
-
(2010)
Nature Methods
, vol.7
, pp. 547-553
-
-
Fernandez, R.1
Das, P.2
Mirabet, V.3
Moscardi, E.4
Traas, J.5
-
8
-
-
79953059177
-
Computational morphodynamics of plants: integrating development over space and time
-
Roeder AHK, Tarr PT, Tobin C, Zhang X, Chickarmane V, et al. (2011) Computational morphodynamics of plants: integrating development over space and time. Nature Reviews Molecular Cell Biology 12: 265-273.
-
(2011)
Nature Reviews Molecular Cell Biology
, vol.12
, pp. 265-273
-
-
Roeder, A.H.K.1
Tarr, P.T.2
Tobin, C.3
Zhang, X.4
Chickarmane, V.5
-
9
-
-
1842372117
-
Applying watershed algorithms to the segmentation of clustered nuclei
-
Malpica N, Solorzano C, Vaquero J, Santos A, Vallcorba I, et al. (1997) Applying watershed algorithms to the segmentation of clustered nuclei. Journal of Cytometry 28: 289-297.
-
(1997)
Journal of Cytometry
, vol.28
, pp. 289-297
-
-
Malpica, N.1
Solorzano, C.2
Vaquero, J.3
Santos, A.4
Vallcorba, I.5
-
10
-
-
0035400763
-
An efficient method based on watershed and rule-based merging for segmentation of 3-d histo-pathological images
-
Adiga U, Chaudhuri B, (2001) An efficient method based on watershed and rule-based merging for segmentation of 3-d histo-pathological images. Pattern Recognition 34: 1449-1458.
-
(2001)
Pattern Recognition
, vol.34
, pp. 1449-1458
-
-
Adiga, U.1
Chaudhuri, B.2
-
11
-
-
34548299771
-
A multi-model approach to simultaneous segmentation and classification of heterogeneous populations of cell nuclei in 3D confocal microscopy images
-
Lin G, Chawla M, Olson K, Guzowski J, Barnes C, et al. (2007) A multi-model approach to simultaneous segmentation and classification of heterogeneous populations of cell nuclei in 3D confocal microscopy images. Cytometry 71A: 724-736.
-
(2007)
Cytometry
, vol.71 A
, pp. 724-736
-
-
Lin, G.1
Chawla, M.2
Olson, K.3
Guzowski, J.4
Barnes, C.5
-
13
-
-
0033639188
-
A geometric model for 3D confocal image analysis
-
Sarti A, De Solorzano C, Lockett S, Malladi R, (2000) A geometric model for 3D confocal image analysis. IEEE Transactions in Biomedical Engineering 47: 1600-1609.
-
(2000)
IEEE Transactions in Biomedical Engineering
, vol.47
, pp. 1600-1609
-
-
Sarti, A.1
de Solorzano, C.2
Lockett, S.3
Malladi, R.4
-
14
-
-
26444456033
-
Segmenting and tracking uorescent cells in dynamic 3D microscopy with coupled active surfaces
-
Dufour A, Shinin V, Tajbakhsh S, Guillon-Aghion N, Olivo-Marin J, et al. (2008) Segmenting and tracking uorescent cells in dynamic 3D microscopy with coupled active surfaces. IEEE Transactions Image Processing 14: 1396-1410.
-
(2008)
IEEE Transactions Image Processing
, vol.14
, pp. 1396-1410
-
-
Dufour, A.1
Shinin, V.2
Tajbakhsh, S.3
Guillon-Aghion, N.4
Olivo-Marin, J.5
-
16
-
-
77249134601
-
Cells segmentation from 3D confocal images of early zebrafish embryogenesis
-
Zanella C, Campana M, Rizzi B, Melani C, Sanguinetti G, et al. (2010) Cells segmentation from 3D confocal images of early zebrafish embryogenesis. IEEE Transactions on Image Processing 19: 770-781.
-
(2010)
IEEE Transactions on Image Processing
, vol.19
, pp. 770-781
-
-
Zanella, C.1
Campana, M.2
Rizzi, B.3
Melani, C.4
Sanguinetti, G.5
-
17
-
-
35948953980
-
3D cell segmentation based on gradient flow tracking
-
Li G, Liu T, Tarokh A, Nie J, Guo L, et al. (2007) 3D cell segmentation based on gradient flow tracking. BMC Cell Biology 8: 40.
-
(2007)
BMC Cell Biology
, vol.8
, pp. 40
-
-
Li, G.1
Liu, T.2
Tarokh, A.3
Nie, J.4
Guo, L.5
-
18
-
-
65549089797
-
Multiscale vessel enhancement filtering
-
Cambridge, Massachusetts
-
Frangi A, Niessen W, Vincken K, Viergever M (1998) Multiscale vessel enhancement filtering. In: Proceedings of the Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI). Cambridge, Massachusetts. pp. 130-137.
-
(1998)
Proceedings of the Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI)
, pp. 130-137
-
-
Frangi, A.1
Niessen, W.2
Vincken, K.3
Viergever, M.4
-
20
-
-
77955201585
-
Anisotropic plate diffusion filtering for detection of cell membranes in 3d microscopy images
-
Mosaliganti K, Janoos F, Gelas A, Noche R, Obholzer N, et al. (2010) Anisotropic plate diffusion filtering for detection of cell membranes in 3d microscopy images. Proc IEEE Int Symp Biomed Imaging 2010: 588-591.
-
(2010)
Proc IEEE Int Symp Biomed Imaging
, vol.2010
, pp. 588-591
-
-
Mosaliganti, K.1
Janoos, F.2
Gelas, A.3
Noche, R.4
Obholzer, N.5
-
23
-
-
56749154426
-
An iterative multi-scale tensor voting scheme for perceptual grouping of natural shapes in cluttered backgrounds
-
Loss L, Bebis G, Nicolescu M, Skurikhin A, (2009) An iterative multi-scale tensor voting scheme for perceptual grouping of natural shapes in cluttered backgrounds. Journal of Computer Vision and Image Understanding (CVIU) 113: 126-149.
-
(2009)
Journal of Computer Vision and Image Understanding (CVIU)
, vol.113
, pp. 126-149
-
-
Loss, L.1
Bebis, G.2
Nicolescu, M.3
Skurikhin, A.4
-
24
-
-
33947284425
-
Iterative voting for inference of structural saliency and characteriztion of subcellular events
-
Parvin B, Yang Q, Han J, Chang H, Rydberg B, et al. (2007) Iterative voting for inference of structural saliency and characteriztion of subcellular events. IEEE Transactions on Image Processing 16: 615-623.
-
(2007)
IEEE Transactions on Image Processing
, vol.16
, pp. 615-623
-
-
Parvin, B.1
Yang, Q.2
Han, J.3
Chang, H.4
Rydberg, B.5
-
26
-
-
13244256957
-
Hierarchical, model-based merging of multiple fragments for improved three-dimensional segmentation of nuclei
-
Lin G, Chawla M, Guzowski KOJ, Barnes C, Roysam B, (2005) Hierarchical, model-based merging of multiple fragments for improved three-dimensional segmentation of nuclei. Cytometry 63A: 20-33.
-
(2005)
Cytometry
, vol.63 A
, pp. 20-33
-
-
Lin, G.1
Chawla, M.2
Guzowski, K.O.J.3
Barnes, C.4
Roysam, B.5
-
27
-
-
42349117524
-
Segmental patterning of the vertebrate embryonic axis
-
Dequeant ML, Pourquie O, (2008) Segmental patterning of the vertebrate embryonic axis. Nature Reviews Genetics 9: 370-382.
-
(2008)
Nature Reviews Genetics
, vol.9
, pp. 370-382
-
-
Dequeant, M.L.1
Pourquie, O.2
-
28
-
-
34250316233
-
Setting the Tempo in Development: An Investigation of the Zebrafish Somite Clock Mechanism
-
Giudicelli F, Özbudak EM, Wright GJ, Lewis J, (2007) Setting the Tempo in Development: An Investigation of the Zebrafish Somite Clock Mechanism. PLoS Biology 5: e150.
-
(2007)
PLoS Biology
, vol.5
-
-
Giudicelli, F.1
Özbudak, E.M.2
Wright, G.J.3
Lewis, J.4
-
29
-
-
0017122064
-
A clock and wavefront model for control of the number of repeated structures during animal morphogenesis
-
Cooke J, Zeeman EC, (1976) A clock and wavefront model for control of the number of repeated structures during animal morphogenesis. Journal of Theoretical Biology 58: 455-476.
-
(1976)
Journal of Theoretical Biology
, vol.58
, pp. 455-476
-
-
Cooke, J.1
Zeeman, E.C.2
-
30
-
-
77957019815
-
The segmentation clock mechanism moves up a notch
-
Gibb S, Maroto M, Dale JK, (2010) The segmentation clock mechanism moves up a notch. Trends in Cell Biology 20: 593-600.
-
(2010)
Trends in Cell Biology
, vol.20
, pp. 593-600
-
-
Gibb, S.1
Maroto, M.2
Dale, J.K.3
-
31
-
-
34250624794
-
From segment to somite: Segmentation to epithelialization analyzed within quantitative frameworks
-
Kulesa PM, Schnell S, Rudloff S, Baker RE, Maini PK, (2007) From segment to somite: Segmentation to epithelialization analyzed within quantitative frameworks. Developmental Dynamics 236: 1392-1402.
-
(2007)
Developmental Dynamics
, vol.236
, pp. 1392-1402
-
-
Kulesa, P.M.1
Schnell, S.2
Rudloff, S.3
Baker, R.E.4
Maini, P.K.5
-
32
-
-
67649405197
-
In toto imaging of embryogenesis with confocal time-lapse microscopy
-
Megason SG, (2009) In toto imaging of embryogenesis with confocal time-lapse microscopy. Methods in Molecular Biology 546: 317-332.
-
(2009)
Methods in Molecular Biology
, vol.546
, pp. 317-332
-
-
Megason, S.G.1
-
33
-
-
0037347363
-
Image registration via level-set motion: Applications to atlas-based segmentation
-
Vemuri B, Ye J, Chen Y, Leonard C, (2003) Image registration via level-set motion: Applications to atlas-based segmentation. Medical Image Analysis 7: 1-20.
-
(2003)
Medical Image Analysis
, vol.7
, pp. 1-20
-
-
Vemuri, B.1
Ye, J.2
Chen, Y.3
Leonard, C.4
|