메뉴 건너뛰기




Volumn 8, Issue 12, 2012, Pages

ACME: Automated Cell Morphology Extractor for Comprehensive Reconstruction of Cell Membranes

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; COMPUTER OPERATING SYSTEMS; CYTOLOGY; IMAGE SEGMENTATION; MORPHOLOGY; OPEN SOURCE SOFTWARE; OPEN SYSTEMS; SCAFFOLDS (BIOLOGY); SOFTWARE TESTING; TISSUE;

EID: 84872027943     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1002780     Document Type: Article
Times cited : (100)

References (33)
  • 1
    • 67349262454 scopus 로고    scopus 로고
    • Tissue tectonics: morphogenetic strain rates, cell shape change and intercalation
    • Blanchard GB, Kabla AJ, Schultz NL, Butler LC, Sanson B, et al. (2009) Tissue tectonics: morphogenetic strain rates, cell shape change and intercalation. Nature Methods 6: 458-464.
    • (2009) Nature Methods , vol.6 , pp. 458-464
    • Blanchard, G.B.1    Kabla, A.J.2    Schultz, N.L.3    Butler, L.C.4    Sanson, B.5
  • 3
    • 0242580739 scopus 로고    scopus 로고
    • Digitizing life at the level of the cell: high-performance laserscanning microscopy and image analysis for in toto imaging of development
    • Megason SG, Fraser SE, (2003) Digitizing life at the level of the cell: high-performance laserscanning microscopy and image analysis for in toto imaging of development. Mechanisms of Development 120: 1407-1420.
    • (2003) Mechanisms of Development , vol.120 , pp. 1407-1420
    • Megason, S.G.1    Fraser, S.E.2
  • 4
    • 34548281030 scopus 로고    scopus 로고
    • Imaging in systems biology
    • Megason SG, Fraser SE, (2007) Imaging in systems biology. Cell 130: 784-795.
    • (2007) Cell , vol.130 , pp. 784-795
    • Megason, S.G.1    Fraser, S.E.2
  • 5
    • 56449123775 scopus 로고    scopus 로고
    • Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy
    • Keller P, Schmidt A, Wittbrodt J, Stelzer E, (2008) Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy. Science 322: 1065-1069.
    • (2008) Science , vol.322 , pp. 1065-1069
    • Keller, P.1    Schmidt, A.2    Wittbrodt, J.3    Stelzer, E.4
  • 6
    • 77955907211 scopus 로고    scopus 로고
    • Cell lineage reconstruction of early zebrafish embryos using label-free nonlinear microscopy
    • Olivier N, Luengo-Oroz MA, Duloquin L, Faure E, Savy T, et al. (2010) Cell lineage reconstruction of early zebrafish embryos using label-free nonlinear microscopy. Science 20 329: 967-971.
    • (2010) Science , vol.20 , Issue.329 , pp. 967-971
    • Olivier, N.1    Luengo-Oroz, M.A.2    Duloquin, L.3    Faure, E.4    Savy, T.5
  • 7
    • 77954705109 scopus 로고    scopus 로고
    • Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution
    • Fernandez R, Das P, Mirabet V, Moscardi E, Traas J, et al. (2010) Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution. Nature Methods 7: 547-553.
    • (2010) Nature Methods , vol.7 , pp. 547-553
    • Fernandez, R.1    Das, P.2    Mirabet, V.3    Moscardi, E.4    Traas, J.5
  • 10
    • 0035400763 scopus 로고    scopus 로고
    • An efficient method based on watershed and rule-based merging for segmentation of 3-d histo-pathological images
    • Adiga U, Chaudhuri B, (2001) An efficient method based on watershed and rule-based merging for segmentation of 3-d histo-pathological images. Pattern Recognition 34: 1449-1458.
    • (2001) Pattern Recognition , vol.34 , pp. 1449-1458
    • Adiga, U.1    Chaudhuri, B.2
  • 11
    • 34548299771 scopus 로고    scopus 로고
    • A multi-model approach to simultaneous segmentation and classification of heterogeneous populations of cell nuclei in 3D confocal microscopy images
    • Lin G, Chawla M, Olson K, Guzowski J, Barnes C, et al. (2007) A multi-model approach to simultaneous segmentation and classification of heterogeneous populations of cell nuclei in 3D confocal microscopy images. Cytometry 71A: 724-736.
    • (2007) Cytometry , vol.71 A , pp. 724-736
    • Lin, G.1    Chawla, M.2    Olson, K.3    Guzowski, J.4    Barnes, C.5
  • 17
    • 35948953980 scopus 로고    scopus 로고
    • 3D cell segmentation based on gradient flow tracking
    • Li G, Liu T, Tarokh A, Nie J, Guo L, et al. (2007) 3D cell segmentation based on gradient flow tracking. BMC Cell Biology 8: 40.
    • (2007) BMC Cell Biology , vol.8 , pp. 40
    • Li, G.1    Liu, T.2    Tarokh, A.3    Nie, J.4    Guo, L.5
  • 20
    • 77955201585 scopus 로고    scopus 로고
    • Anisotropic plate diffusion filtering for detection of cell membranes in 3d microscopy images
    • Mosaliganti K, Janoos F, Gelas A, Noche R, Obholzer N, et al. (2010) Anisotropic plate diffusion filtering for detection of cell membranes in 3d microscopy images. Proc IEEE Int Symp Biomed Imaging 2010: 588-591.
    • (2010) Proc IEEE Int Symp Biomed Imaging , vol.2010 , pp. 588-591
    • Mosaliganti, K.1    Janoos, F.2    Gelas, A.3    Noche, R.4    Obholzer, N.5
  • 21
    • 0030263225 scopus 로고    scopus 로고
    • Inferring global perceptual contours from local features
    • Guy G, Medioni G, (1996) Inferring global perceptual contours from local features. International Journal of Computer Vision 20: 113-133.
    • (1996) International Journal of Computer Vision , vol.20 , pp. 113-133
    • Guy, G.1    Medioni, G.2
  • 24
    • 33947284425 scopus 로고    scopus 로고
    • Iterative voting for inference of structural saliency and characteriztion of subcellular events
    • Parvin B, Yang Q, Han J, Chang H, Rydberg B, et al. (2007) Iterative voting for inference of structural saliency and characteriztion of subcellular events. IEEE Transactions on Image Processing 16: 615-623.
    • (2007) IEEE Transactions on Image Processing , vol.16 , pp. 615-623
    • Parvin, B.1    Yang, Q.2    Han, J.3    Chang, H.4    Rydberg, B.5
  • 26
    • 13244256957 scopus 로고    scopus 로고
    • Hierarchical, model-based merging of multiple fragments for improved three-dimensional segmentation of nuclei
    • Lin G, Chawla M, Guzowski KOJ, Barnes C, Roysam B, (2005) Hierarchical, model-based merging of multiple fragments for improved three-dimensional segmentation of nuclei. Cytometry 63A: 20-33.
    • (2005) Cytometry , vol.63 A , pp. 20-33
    • Lin, G.1    Chawla, M.2    Guzowski, K.O.J.3    Barnes, C.4    Roysam, B.5
  • 27
    • 42349117524 scopus 로고    scopus 로고
    • Segmental patterning of the vertebrate embryonic axis
    • Dequeant ML, Pourquie O, (2008) Segmental patterning of the vertebrate embryonic axis. Nature Reviews Genetics 9: 370-382.
    • (2008) Nature Reviews Genetics , vol.9 , pp. 370-382
    • Dequeant, M.L.1    Pourquie, O.2
  • 28
    • 34250316233 scopus 로고    scopus 로고
    • Setting the Tempo in Development: An Investigation of the Zebrafish Somite Clock Mechanism
    • Giudicelli F, Özbudak EM, Wright GJ, Lewis J, (2007) Setting the Tempo in Development: An Investigation of the Zebrafish Somite Clock Mechanism. PLoS Biology 5: e150.
    • (2007) PLoS Biology , vol.5
    • Giudicelli, F.1    Özbudak, E.M.2    Wright, G.J.3    Lewis, J.4
  • 29
    • 0017122064 scopus 로고
    • A clock and wavefront model for control of the number of repeated structures during animal morphogenesis
    • Cooke J, Zeeman EC, (1976) A clock and wavefront model for control of the number of repeated structures during animal morphogenesis. Journal of Theoretical Biology 58: 455-476.
    • (1976) Journal of Theoretical Biology , vol.58 , pp. 455-476
    • Cooke, J.1    Zeeman, E.C.2
  • 30
    • 77957019815 scopus 로고    scopus 로고
    • The segmentation clock mechanism moves up a notch
    • Gibb S, Maroto M, Dale JK, (2010) The segmentation clock mechanism moves up a notch. Trends in Cell Biology 20: 593-600.
    • (2010) Trends in Cell Biology , vol.20 , pp. 593-600
    • Gibb, S.1    Maroto, M.2    Dale, J.K.3
  • 31
    • 34250624794 scopus 로고    scopus 로고
    • From segment to somite: Segmentation to epithelialization analyzed within quantitative frameworks
    • Kulesa PM, Schnell S, Rudloff S, Baker RE, Maini PK, (2007) From segment to somite: Segmentation to epithelialization analyzed within quantitative frameworks. Developmental Dynamics 236: 1392-1402.
    • (2007) Developmental Dynamics , vol.236 , pp. 1392-1402
    • Kulesa, P.M.1    Schnell, S.2    Rudloff, S.3    Baker, R.E.4    Maini, P.K.5
  • 32
    • 67649405197 scopus 로고    scopus 로고
    • In toto imaging of embryogenesis with confocal time-lapse microscopy
    • Megason SG, (2009) In toto imaging of embryogenesis with confocal time-lapse microscopy. Methods in Molecular Biology 546: 317-332.
    • (2009) Methods in Molecular Biology , vol.546 , pp. 317-332
    • Megason, S.G.1
  • 33
    • 0037347363 scopus 로고    scopus 로고
    • Image registration via level-set motion: Applications to atlas-based segmentation
    • Vemuri B, Ye J, Chen Y, Leonard C, (2003) Image registration via level-set motion: Applications to atlas-based segmentation. Medical Image Analysis 7: 1-20.
    • (2003) Medical Image Analysis , vol.7 , pp. 1-20
    • Vemuri, B.1    Ye, J.2    Chen, Y.3    Leonard, C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.