A robust feature selection method for novel pre-microRNA identification using a combination of nucleotide-structure triplets

Proceedings - 2012 IEEE 2nd Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012

Volumn , Issue , 2012, Pages 61-

  Stepanowsky, Petra ^a   Kim, Jihoon ^a   Ohno Machado, Lucila ^a  

^a UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AREA UNDER THE ROC CURVE; CLASSIFICATION PERFORMANCE; FEATURE SELECTION METHODS; FEATURE SETS; GENE PRODUCTS; LOGISTIC REGRESSIONS; MICRORNAS; MINIMUM FREE ENERGIES; NON-CODING RNAS; PERFORMANCE EVALUATION; POST-TRANSCRIPTIONAL REGULATIONS; RANDOM FORESTS; ROBUST FEATURE SELECTION; SECONDARY STRUCTURES;

DECISION TREES; INFORMATION SCIENCE; LOGISTICS; NUCLEOTIDES;

RNA;

EID: 84872003383     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/HISB.2012.20     Document Type: Conference Paper

References (7)

1. D. P. Bartel, "MicroRNAs: genomics, biogenesis, mechanism, and function", Cell, vol. 116, Jan. 2004, pp. 281-297.
2. Y. A. Lussier, W. M. Stadler and J. L. Chen, "Advantages of genomic complexity: bioinformatics opportunities in microRNA cancer signatures", JAMIA, vol. 19, 2012, pp. 156-160.
3. C. Xue et al., "Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine", BMC Bioinformatics, vol. 6, 2005.
4. P. Jiang et al., "MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features", Nucleic Acids Research, vol. 35, 2007, pp. W339-W344.
5. D. Zhao, Y. Wang, D. Luo, X. Shi, L. Wang, D. Xu, J. Yu and Y. Liang, "PMirP: a pre-microRNA prediction method based on structure-sequence hybrid features", Elsevier, 2010, pp. 127-132.
6. J. Kim et al., "AnyExpress: Integreated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm", BMC Bioinformatics, vol. 12, 2011.
7. R. A. Irizarry et al., "Multiple-laboratory comparison of microarray platforms", Nature Methods, vol. 2, 2005, pp. 345-350.