-
2
-
-
0025914242
-
Crystal structure of a CAP-DNA complex: The DNA is bent by 90°
-
Schultz, S. C., Shields, G. C. & Steitz, T. A., Crystal structure of a CAP-DNA complex: The DNA is bent by 90°. Science 253, 1001-1007 (1991).
-
(1991)
Science
, vol.253
, pp. 1001-1007
-
-
Schultz, S.C.1
Shields, G.C.2
Steitz, T.A.3
-
3
-
-
0027483012
-
Co-crystal structure of TBP recognizing the minor groove of a TATA element
-
Kim, J. L., Nikolov, D. B. & Burley, S. K., Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature 365, 520-527 (1993).
-
(1993)
Nature
, vol.365
, pp. 520-527
-
-
Kim, J.L.1
Nikolov, D.B.2
Burley, S.K.3
-
4
-
-
0027504913
-
Crystal of a yeast TBP/TATA-box complex
-
Kim, Y., Geiger, J. H., Hahn, S. & Sigler, P., Crystal of a yeast TBP/TATA-box complex. Nature 365, 512-520 (1993).
-
(1993)
Nature
, vol.365
, pp. 512-520
-
-
Kim, Y.1
Geiger, J.H.2
Hahn, S.3
Sigler, P.4
-
5
-
-
0030451819
-
Crystal structure of an IHF-DNA complex: A protein-induced DNA U-turn
-
Rice, P. A., Yang, S., Mizuuchi, K. & Nash, H. A. Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn. Cell 87, 1295-1306 (1996).
-
(1996)
Cell
, vol.87
, pp. 1295-1306
-
-
Rice, P.A.1
Yang, S.2
Mizuuchi, K.3
Nash, H.A.4
-
6
-
-
0029075461
-
Molecular basis of human 46X, y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex
-
Werner, M. H., Huth, J. R., Gronenborn, A. M., & Clore, G. M., Molecular basis of human 46X, Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex. Cell 81, 705-714 (1995).
-
(1995)
Cell
, vol.81
, pp. 705-714
-
-
Werner, M.H.1
Huth, J.R.2
Gronenborn, A.M.3
Clore, G.M.4
-
7
-
-
0029131298
-
Structural basis for DNA bending by the architectural transcription factor LEF-1
-
Love, J. J., Li, X., Case, D. A., Glese, K., Grosschedl, R. & Wright, P. E., Structural basis for DNA bending by the architectural transcription factor LEF-1. Nature 367, 791-795 (1995).
-
(1995)
Nature
, vol.367
, pp. 791-795
-
-
Love, J.J.1
Li, X.2
Case, D.A.3
Glese, K.4
Grosschedl, R.5
Wright, P.E.6
-
8
-
-
0008123541
-
Crystal lattice packing is important in determining the bend of a DNA dodecamer containing an adenine tract
-
DiGabriele, A. D., Sanderson, M. R. & Steitz, T. A., Crystal lattice packing is important in determining the bend of a DNA dodecamer containing an adenine tract. Proc. Natl. Acad. Sci. USA 86, 1816-1820 (1989).
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 1816-1820
-
-
Digabriele, A.D.1
Sanderson, M.R.2
Steitz, T.A.3
-
9
-
-
0023040914
-
1H Two-dimensional nuclear Overhauser effect and relaxation studies of poly(dA)•poly(dT)
-
1H Two-dimensional nuclear Overhauser effect and relaxation studies of poly(dA)•poly(dT). Biochemistry 25, 3335-3346 (1986).
-
(1986)
Biochemistry
, vol.25
, pp. 3335-3346
-
-
Behling, R.W.1
Kearns, D.R.2
-
10
-
-
0023513912
-
The structure of an oligo(dA). oligo(dT) tract and its biological implications
-
Nelson, H. C. M., Finch, J. T., Luisi, B. F. & Klug, A., The structure of an oligo(dA). oligo(dT) tract and its biological implications. Nature 330, 221-226 (1987).
-
(1987)
Nature
, vol.330
, pp. 221-226
-
-
Nelson, H.C.M.1
Finch, J.T.2
Luisi, B.F.3
Klug, A.4
-
11
-
-
0023350412
-
The Structure of Poly(dA).poly(dT) as Revealed by an X-Ray Fibre Diffraction
-
Alexeev, D. G., Lipanov, A. A. & Skuratovskii, I. Ya., The Structure of Poly(dA). poly(dT) as Revealed by an X-Ray Fibre Diffraction. J. Biomol. Struct. Dyn. 4, 989-1012 (1987).
-
(1987)
J. Biomol. Struct. Dyn.
, vol.4
, pp. 989-1012
-
-
Alexeev, D.G.1
Lipanov, A.A.2
Ya, S.I.3
-
12
-
-
0023663611
-
The structure of poly(dA)•poly(dT) in a condensed state and in solution
-
Lipanov, A. A. & Chuprina, V. P., The structure of poly(dA)•poly(dT) in a condensed state and in solution. Nucleic Acids Res. 15, 5833-5844 (1987).
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 5833-5844
-
-
Lipanov, A.A.1
Chuprina, V.P.2
-
13
-
-
0023663548
-
Two-dimensional NMR investigation of a bent DNA fragment: Assignment of the proton resonance and preliminary structure analysis
-
Kintanar, A., Klevit, R. E., & Reid, B. R., Two-dimensional NMR investigation of a bent DNA fragment: Assignment of the proton resonance and preliminary structure analysis. Nucleic Acids Res. 15, 5845-5862 (1987).
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 5845-5862
-
-
Kintanar, A.1
Klevit, R.E.2
Reid, B.R.3
-
14
-
-
0023747250
-
One-and two-dimensional NMR studies on the conformation of DNA containing the oligo(dA)oligo(dT) tract
-
Katahira, M., Sugeta, H., Kyogoku, Y., Fujii, S., Fujisawa, R., & Tomita, K., One-and two-dimensional NMR studies on the conformation of DNA containing the oligo(dA)oligo(dT) tract. Nucleic Acids Res. 16, 8619-8632 (1988).
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 8619-8632
-
-
Katahira, M.1
Sugeta, H.2
Kyogoku, Y.3
Fujii, S.4
Fujisawa, R.5
Tomita, K.6
-
15
-
-
0024276842
-
Structure of a bent DNA: Two-dimensional NMR studies on d-GAAAATTTTC
-
Sarma, M. H., Gupta, G. & Sarma, R. H., Structure of a bent DNA: Two-dimensional NMR studies on d-GAAAATTTTC. Biochemistry 27, 3423-3432 (1988).
-
(1988)
Biochemistry
, vol.27
, pp. 3423-3432
-
-
Sarma, M.H.1
Gupta, G.2
Sarma, R.H.3
-
16
-
-
0023694192
-
On the question of DNA bending: Two-dimensional NMR studies on d-GTTTTAAAAC in solution
-
Gupta, G., Sarma, M. H., and Sarma, R. H., On the question of DNA bending: Two-dimensional NMR studies on d-GTTTTAAAAC in solution. Biochemistry 27, 7909-7919 (1988).
-
(1988)
Biochemistry
, vol.27
, pp. 7909-7919
-
-
Gupta, G.1
Sarma, M.H.2
Sarma, R.H.3
-
18
-
-
0025101812
-
A new model for the bending of DNAs containing the oligo(dA) tracts based on NMR observations
-
Katahira, M., Sugeta, H. & Kyogoku, Y., A new model for the bending of DNAs containing the oligo(dA) tracts based on NMR observations. Nucleic Acids Res. 18, 613-618 (1990).
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 613-618
-
-
Katahira, M.1
Sugeta, H.2
Kyogoku, Y.3
-
19
-
-
0026048778
-
Sequence effect on local DNA topology
-
Chuprina, V. P., Lipanov, A. A., Fedoroff, O. Yu., Kim, S.-G., Kintanar, A., & Reid, B. R., Sequence effect on local DNA topology. Proc. Natl. Acad. Sci. U. S. A. 88, 9087-9091 (1991).
-
(1991)
Proc. Natl. Acad. Sci. U. S. A.
, vol.88
, pp. 9087-9091
-
-
Chuprina, V.P.1
Lipanov, A.A.2
Yu., F.O.3
Kim, S.-G.4
Kintanar, A.5
Reid, B.R.6
-
20
-
-
84987082489
-
DNA bending studied by MD and 2D NMR NOESY simulations: Role of junction sequence between the A/T tracts
-
Lou, J., Sarma, M. H., Gupta, G. & Sarma, R. H., DNA bending studied by MD and 2D NMR NOESY simulations: Role of junction sequence between the A/T tracts. International Journal of Quantum Chemistry QBS 18, 213-229 (1991).
-
(1991)
International Journal of Quantum Chemistry QBS
, vol.18
, pp. 213-229
-
-
Lou, J.1
Sarma, M.H.2
Gupta, G.3
Sarma, R.H.4
-
21
-
-
0027324176
-
Decreased interstrand H2-H1' distance in the GC rich part of the duplex d(CCT-CAAACTCC)•d(GGAGTTTGAGG) in solution at low temperature: Proton nuclear magnetic resonance investigation
-
Ulyanov, N. B., Sarma, M. H., Zhurkin, V. B. & Sarma, R. H., Decreased interstrand H2-H1' distance in the GC rich part of the duplex d(CCT-CAAACTCC)•d(GGAGTTTGAGG) in solution at low temperature: Proton nuclear magnetic resonance investigation. Biochemistry 32, 6875-6883 (1993).
-
(1993)
Biochemistry
, vol.32
, pp. 6875-6883
-
-
Ulyanov, N.B.1
Sarma, M.H.2
Zhurkin, V.B.3
Sarma, R.H.4
-
22
-
-
84871975002
-
-
Adenine Press, New York, USA
-
Olson, W. K., Sarma, M. H., Sarma, R. H. & Sundaralingam, M. (eds.) Structure and Expression, Volume 3: DNA Bending and Curvature, Proceedings of the Fifth Conversation, Adenine Press, New York, USA (1988).
-
(1988)
Structure and Expression, Volume 3: DNA Bending and Curvature, Proceedings of the Fifth Conversation
-
-
Olson, W.K.1
Sarma, M.H.2
Sarma, R.H.3
Sundaralingam, M.4
-
23
-
-
0000541574
-
Twenty years of DNA bending
-
(Sarma, R. H. & Sarma, M. H., eds.), Adenine Press, New York.
-
Olson, W. K. & Zhurkin, V. B. (1996). Twenty Years of DNA Bending. In Biological Structure and Dynamics, Vol. 2, Proceedings of the Ninth Conversation (Sarma, R. H. & Sarma, M. H., eds.), Adenine Press, New York. pp. 341-370.
-
(1996)
Biological Structure and Dynamics, Vol. 2, Proceedings of the Ninth Conversation
, pp. 341-370
-
-
Olson, W.K.1
Zhurkin, V.B.2
-
24
-
-
0001824401
-
Sequence-dependent B-DNA conformation in crystals and in protein complexes
-
Sarma, R. H. & Sarma, M. H., eds Adenine Press, New York
-
Dickerson, R. E., Sequence-Dependent B-DNA Conformation in Crystals and in ProteinComplexes. In Structure, Motion, Interaction and Expression of Biological Macromolecules, Proceedings of the Ninth Conversation (Sarma, R. H. & Sarma, M. H., eds), pp. 17-36, Adenine Press, New York. (1998).
-
(1998)
Structure, Motion, Interaction and Expression of Biological Macromolecules, Proceedings of the Ninth Conversation
, pp. 17-36
-
-
Dickerson, R.E.1
-
25
-
-
0029041940
-
Stereochemical basis of DNA bending by transcription factors
-
Suzuki, M. & Yagi, N., Stereochemical basis of DNA bending by transcription factors. Nucleic Acids Res. 23, 2383-2091 (1995).
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 2383-2091
-
-
Suzuki, M.1
Yagi, N.2
-
26
-
-
0028241531
-
Distinctive DNA conformation with enlarged major groove is found in Zn-finger-DNA and other protein-DNA complexes
-
Nekludova, L. & Pabo, C. O., Distinctive DNA conformation with enlarged major groove is found in Zn-finger-DNA and other protein-DNA complexes. Proc. Natl. Acad. Sci. USA 91, 6948-6952 (1994).
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 6948-6952
-
-
Nekludova, L.1
Pabo, C.O.2
-
27
-
-
0028315988
-
Determinants of repressor/operator recognition from the structure of the trp operator binding site
-
Shakked, Z., Guzikevich-Guerstein, G., Frolow, F., Rabinovich, D., Joakimiak, A. & Sigler, P. B., Determinants of repressor/operator recognition from the structure of the trp operator binding site. Nature 368, 469-473 (1994).
-
(1994)
Nature
, vol.368
, pp. 469-473
-
-
Shakked, Z.1
Guzikevich-Guerstein, G.2
Frolow, F.3
Rabinovich, D.4
Joakimiak, A.5
Sigler, P.B.6
-
28
-
-
0001045906
-
1H coupling constants in DNA fragments by 2D NMR
-
1H coupling constants in DNA fragments by 2D NMR. J. Magn. Reson. 79, 429-438 (1988).
-
(1988)
J. Magn. Reson.
, vol.79
, pp. 429-438
-
-
Bax, A.1
Lerner, L.2
-
29
-
-
0009978483
-
DNA bending and sequence-dependent backbone conformation: NMR and computer experiments
-
Ojha, R. P., Dhingra, M. M., Sarma, M. H., Shibata, M., Farrar, M., Turner, C. J., and Sarma, R. H., DNA Bending and Sequence-Dependent Backbone Conformation: NMR and Computer Experiments. Eur. J. Biochem 265, 35-53 (1999).
-
(1999)
Eur. J. Biochem
, vol.265
, pp. 35-53
-
-
Ojha, R.P.1
Dhingra, M.M.2
Sarma, M.H.3
Shibata, M.4
Farrar, M.5
Turner, C.J.6
Sarma, R.H.7
-
30
-
-
0015511563
-
Conformational analysis of the sugar ring in nucleosides and nucleotides. A new description using the concept of pseudoro-tation
-
Altona, C. & Sundaralingam, M., Conformational analysis of the sugar ring in nucleosides and nucleotides. A new description using the concept of pseudoro-tation. J. Am. Chem. Soc. 94, 8205-8212 (1972).
-
(1972)
J. Am. Chem. Soc.
, vol.94
, pp. 8205-8212
-
-
Altona, C.1
Sundaralingam, M.2
-
31
-
-
0015913888
-
Conformational analysis of the sugar ring in nucleosides and nucleotides. Improved method for the interpretation of proton magnetic resonance coupling constants
-
Altona, C. & Sundaralingam, M., Conformational analysis of the sugar ring in nucleosides and nucleotides. Improved method for the interpretation of proton magnetic resonance coupling constants. J. Am. Chem. Soc. 95, 2333-2344 (1973).
-
(1973)
J. Am. Chem. Soc.
, vol.95
, pp. 2333-2344
-
-
Altona, C.1
Sundaralingam, M.2
-
32
-
-
0023111788
-
Conformational analysis of the deoxyribofuranose ring in DNA by means of sums of proton-proton coupling constants: A graphical method
-
Rinkel, L. J. & Altona, C., Conformational analysis of the deoxyribofuranose ring in DNA by means of sums of proton-proton coupling constants: A graphical method. J. Biomol. Struct. Dyn 4, 621-649 (1987).
-
(1987)
J. Biomol. Struct. Dyn
, vol.4
, pp. 621-649
-
-
Rinkel, L.J.1
Altona, C.2
-
33
-
-
0028815252
-
Probability assessment of conformational ensembles; Sugar repuckering in DNA duplex solutions
-
Ulyanov, N. B., Schmitz, U., Kumar, A., and James, T. L., Probability assessment of conformational ensembles; Sugar repuckering in DNA duplex solutions. Biophys. J. 68, 13-24 (1995).
-
(1995)
Biophys. J.
, vol.68
, pp. 13-24
-
-
Ulyanov, N.B.1
Schmitz, U.2
Kumar, A.3
James, T.L.4
-
34
-
-
0025800219
-
Static and statistical bending of DNA evaluated by Monte Carlo simulations, Proc
-
Zhurkin, V. B., Ulyanov, N. B., Gorin, A. A. and Jernigan, R. L., Static and statistical bending of DNA evaluated by Monte Carlo simulations, Proc. Natl. Acad. Sci. USA 88, 7046-7050 (1991).
-
(1991)
Natl. Acad. Sci. USA
, vol.88
, pp. 7046-7050
-
-
Zhurkin, V.B.1
Ulyanov, N.B.2
Gorin, A.A.3
Jernigan, R.L.4
-
35
-
-
0002470205
-
Principles governing nucleic acid and polynucleotide conformations
-
Sundaralingam, M. & Rao, S. T., eds. University Park Press, Baltimore USA
-
Sundaralingam, M., Principles Governing Nucleic Acid and Polynucleotide Conformations. In Structure and Conformation of Nucleic Acids and Protein-Nucleic Acid Interactions (Sundaralingam, M. & Rao, S. T., eds.), pp. 487-524, University Park Press, Baltimore USA (1975).
-
(1975)
Structure and Conformation of Nucleic Acids and Protein-Nucleic Acid Interactions
, pp. 487-524
-
-
Sundaralingam, M.1
-
36
-
-
0021112250
-
-
Arnott, S., Chandrasekaran, R., Hall, I. H. & Puigjaner, L. C., Heteronomous DNA. Nucleic Acids Res. 11, 4141-4155 (1983).
-
(1983)
Nucleic Acids Res
, vol.11
, pp. 4141-4155
-
-
Arnott, S.1
Chandrasekaran, R.2
Hall, I.H.3
Puigjaner, L.C.4
Heteronomous, D.N.A.5
-
37
-
-
0022477409
-
DNA bending at ade-nine•thymine tracts
-
Koo, H.-S., Wu, H.-M. & Crothers, D. M. (1986). DNA bending at ade-nine•thymine tracts. Nature 320, 501-506.
-
(1986)
Nature
, vol.320
, pp. 501-506
-
-
Koo, H.-S.1
Wu, H.-M.2
Crothers, D.M.3
-
38
-
-
0022067646
-
Base tilt of poly(dA)•poly(dT) and poly(dAT)•poly(dAT) in solution determined by linear dichroism
-
Edmondson, S. P. & Johnson, W. C., Jr. (1985). Base tilt of poly(dA)•poly(dT) and poly(dAT)•poly(dAT) in solution determined by linear dichroism. Biopolymers 24, 825-841.
-
(1985)
Biopolymers
, vol.24
, pp. 825-841
-
-
Edmondson, S.P.1
Johnson Jr., W.C.2
-
39
-
-
0027078718
-
In vitro evolution of intrinsically bent DNA
-
Beutel, B. A. & Gold, L. (1992). In vitro evolution of intrinsically bent DNA. J. Mol. Biol. 228, 803-812.
-
(1992)
J. Mol. Biol.
, vol.228
, pp. 803-812
-
-
Beutel, B.A.1
Gold, L.2
-
40
-
-
0343313697
-
-
L. P. Kartashev and S. I. Kartashev (Eds.), Int. Supercomputing Inst., St Petersburg, FL
-
Ulyanov, N. B., Gorin, A. A., and Zhurkin, V. B., Conformational mechanics of the DNA double helix. A combined Monte Carlo and energy minimization approach Proc. Int. Conf. On Supercomputing '89: Supercomputer Applications, Volume II, L. P. Kartashev and S. I. Kartashev (Eds.), Int. Supercomputing Inst., St Petersburg, FL, pp. 368-370 (1989).
-
(1989)
Conformational Mechanics of the DNA Double Helix. A Combined Monte Carlo and Energy Minimization Approach Proc. Int. Conf. on Supercomputing '89: Supercomputer Applications, Volume II
, pp. 368-370
-
-
Ulyanov, N.B.1
Gorin, A.A.2
Zhurkin, V.B.3
|