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Volumn 17, Issue SUPPL. 1, 2000, Pages 317-325

DNA bending and sugar switching

Author keywords

[No Author keywords available]

Indexed keywords

CARBOHYDRATE; DNA;

EID: 84871979500     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.2000.10506637     Document Type: Article
Times cited : (7)

References (40)
  • 2
    • 0025914242 scopus 로고
    • Crystal structure of a CAP-DNA complex: The DNA is bent by 90°
    • Schultz, S. C., Shields, G. C. & Steitz, T. A., Crystal structure of a CAP-DNA complex: The DNA is bent by 90°. Science 253, 1001-1007 (1991).
    • (1991) Science , vol.253 , pp. 1001-1007
    • Schultz, S.C.1    Shields, G.C.2    Steitz, T.A.3
  • 3
    • 0027483012 scopus 로고
    • Co-crystal structure of TBP recognizing the minor groove of a TATA element
    • Kim, J. L., Nikolov, D. B. & Burley, S. K., Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature 365, 520-527 (1993).
    • (1993) Nature , vol.365 , pp. 520-527
    • Kim, J.L.1    Nikolov, D.B.2    Burley, S.K.3
  • 4
    • 0027504913 scopus 로고
    • Crystal of a yeast TBP/TATA-box complex
    • Kim, Y., Geiger, J. H., Hahn, S. & Sigler, P., Crystal of a yeast TBP/TATA-box complex. Nature 365, 512-520 (1993).
    • (1993) Nature , vol.365 , pp. 512-520
    • Kim, Y.1    Geiger, J.H.2    Hahn, S.3    Sigler, P.4
  • 5
    • 0030451819 scopus 로고    scopus 로고
    • Crystal structure of an IHF-DNA complex: A protein-induced DNA U-turn
    • Rice, P. A., Yang, S., Mizuuchi, K. & Nash, H. A. Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn. Cell 87, 1295-1306 (1996).
    • (1996) Cell , vol.87 , pp. 1295-1306
    • Rice, P.A.1    Yang, S.2    Mizuuchi, K.3    Nash, H.A.4
  • 6
    • 0029075461 scopus 로고
    • Molecular basis of human 46X, y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex
    • Werner, M. H., Huth, J. R., Gronenborn, A. M., & Clore, G. M., Molecular basis of human 46X, Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex. Cell 81, 705-714 (1995).
    • (1995) Cell , vol.81 , pp. 705-714
    • Werner, M.H.1    Huth, J.R.2    Gronenborn, A.M.3    Clore, G.M.4
  • 7
    • 0029131298 scopus 로고
    • Structural basis for DNA bending by the architectural transcription factor LEF-1
    • Love, J. J., Li, X., Case, D. A., Glese, K., Grosschedl, R. & Wright, P. E., Structural basis for DNA bending by the architectural transcription factor LEF-1. Nature 367, 791-795 (1995).
    • (1995) Nature , vol.367 , pp. 791-795
    • Love, J.J.1    Li, X.2    Case, D.A.3    Glese, K.4    Grosschedl, R.5    Wright, P.E.6
  • 8
    • 0008123541 scopus 로고
    • Crystal lattice packing is important in determining the bend of a DNA dodecamer containing an adenine tract
    • DiGabriele, A. D., Sanderson, M. R. & Steitz, T. A., Crystal lattice packing is important in determining the bend of a DNA dodecamer containing an adenine tract. Proc. Natl. Acad. Sci. USA 86, 1816-1820 (1989).
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 1816-1820
    • Digabriele, A.D.1    Sanderson, M.R.2    Steitz, T.A.3
  • 9
    • 0023040914 scopus 로고
    • 1H Two-dimensional nuclear Overhauser effect and relaxation studies of poly(dA)•poly(dT)
    • 1H Two-dimensional nuclear Overhauser effect and relaxation studies of poly(dA)•poly(dT). Biochemistry 25, 3335-3346 (1986).
    • (1986) Biochemistry , vol.25 , pp. 3335-3346
    • Behling, R.W.1    Kearns, D.R.2
  • 10
    • 0023513912 scopus 로고
    • The structure of an oligo(dA). oligo(dT) tract and its biological implications
    • Nelson, H. C. M., Finch, J. T., Luisi, B. F. & Klug, A., The structure of an oligo(dA). oligo(dT) tract and its biological implications. Nature 330, 221-226 (1987).
    • (1987) Nature , vol.330 , pp. 221-226
    • Nelson, H.C.M.1    Finch, J.T.2    Luisi, B.F.3    Klug, A.4
  • 11
    • 0023350412 scopus 로고
    • The Structure of Poly(dA).poly(dT) as Revealed by an X-Ray Fibre Diffraction
    • Alexeev, D. G., Lipanov, A. A. & Skuratovskii, I. Ya., The Structure of Poly(dA). poly(dT) as Revealed by an X-Ray Fibre Diffraction. J. Biomol. Struct. Dyn. 4, 989-1012 (1987).
    • (1987) J. Biomol. Struct. Dyn. , vol.4 , pp. 989-1012
    • Alexeev, D.G.1    Lipanov, A.A.2    Ya, S.I.3
  • 12
    • 0023663611 scopus 로고
    • The structure of poly(dA)•poly(dT) in a condensed state and in solution
    • Lipanov, A. A. & Chuprina, V. P., The structure of poly(dA)•poly(dT) in a condensed state and in solution. Nucleic Acids Res. 15, 5833-5844 (1987).
    • (1987) Nucleic Acids Res. , vol.15 , pp. 5833-5844
    • Lipanov, A.A.1    Chuprina, V.P.2
  • 13
    • 0023663548 scopus 로고
    • Two-dimensional NMR investigation of a bent DNA fragment: Assignment of the proton resonance and preliminary structure analysis
    • Kintanar, A., Klevit, R. E., & Reid, B. R., Two-dimensional NMR investigation of a bent DNA fragment: Assignment of the proton resonance and preliminary structure analysis. Nucleic Acids Res. 15, 5845-5862 (1987).
    • (1987) Nucleic Acids Res. , vol.15 , pp. 5845-5862
    • Kintanar, A.1    Klevit, R.E.2    Reid, B.R.3
  • 14
    • 0023747250 scopus 로고
    • One-and two-dimensional NMR studies on the conformation of DNA containing the oligo(dA)oligo(dT) tract
    • Katahira, M., Sugeta, H., Kyogoku, Y., Fujii, S., Fujisawa, R., & Tomita, K., One-and two-dimensional NMR studies on the conformation of DNA containing the oligo(dA)oligo(dT) tract. Nucleic Acids Res. 16, 8619-8632 (1988).
    • (1988) Nucleic Acids Res. , vol.16 , pp. 8619-8632
    • Katahira, M.1    Sugeta, H.2    Kyogoku, Y.3    Fujii, S.4    Fujisawa, R.5    Tomita, K.6
  • 15
    • 0024276842 scopus 로고
    • Structure of a bent DNA: Two-dimensional NMR studies on d-GAAAATTTTC
    • Sarma, M. H., Gupta, G. & Sarma, R. H., Structure of a bent DNA: Two-dimensional NMR studies on d-GAAAATTTTC. Biochemistry 27, 3423-3432 (1988).
    • (1988) Biochemistry , vol.27 , pp. 3423-3432
    • Sarma, M.H.1    Gupta, G.2    Sarma, R.H.3
  • 16
    • 0023694192 scopus 로고
    • On the question of DNA bending: Two-dimensional NMR studies on d-GTTTTAAAAC in solution
    • Gupta, G., Sarma, M. H., and Sarma, R. H., On the question of DNA bending: Two-dimensional NMR studies on d-GTTTTAAAAC in solution. Biochemistry 27, 7909-7919 (1988).
    • (1988) Biochemistry , vol.27 , pp. 7909-7919
    • Gupta, G.1    Sarma, M.H.2    Sarma, R.H.3
  • 18
    • 0025101812 scopus 로고
    • A new model for the bending of DNAs containing the oligo(dA) tracts based on NMR observations
    • Katahira, M., Sugeta, H. & Kyogoku, Y., A new model for the bending of DNAs containing the oligo(dA) tracts based on NMR observations. Nucleic Acids Res. 18, 613-618 (1990).
    • (1990) Nucleic Acids Res. , vol.18 , pp. 613-618
    • Katahira, M.1    Sugeta, H.2    Kyogoku, Y.3
  • 20
    • 84987082489 scopus 로고
    • DNA bending studied by MD and 2D NMR NOESY simulations: Role of junction sequence between the A/T tracts
    • Lou, J., Sarma, M. H., Gupta, G. & Sarma, R. H., DNA bending studied by MD and 2D NMR NOESY simulations: Role of junction sequence between the A/T tracts. International Journal of Quantum Chemistry QBS 18, 213-229 (1991).
    • (1991) International Journal of Quantum Chemistry QBS , vol.18 , pp. 213-229
    • Lou, J.1    Sarma, M.H.2    Gupta, G.3    Sarma, R.H.4
  • 21
    • 0027324176 scopus 로고
    • Decreased interstrand H2-H1' distance in the GC rich part of the duplex d(CCT-CAAACTCC)•d(GGAGTTTGAGG) in solution at low temperature: Proton nuclear magnetic resonance investigation
    • Ulyanov, N. B., Sarma, M. H., Zhurkin, V. B. & Sarma, R. H., Decreased interstrand H2-H1' distance in the GC rich part of the duplex d(CCT-CAAACTCC)•d(GGAGTTTGAGG) in solution at low temperature: Proton nuclear magnetic resonance investigation. Biochemistry 32, 6875-6883 (1993).
    • (1993) Biochemistry , vol.32 , pp. 6875-6883
    • Ulyanov, N.B.1    Sarma, M.H.2    Zhurkin, V.B.3    Sarma, R.H.4
  • 25
    • 0029041940 scopus 로고
    • Stereochemical basis of DNA bending by transcription factors
    • Suzuki, M. & Yagi, N., Stereochemical basis of DNA bending by transcription factors. Nucleic Acids Res. 23, 2383-2091 (1995).
    • (1995) Nucleic Acids Res. , vol.23 , pp. 2383-2091
    • Suzuki, M.1    Yagi, N.2
  • 26
    • 0028241531 scopus 로고
    • Distinctive DNA conformation with enlarged major groove is found in Zn-finger-DNA and other protein-DNA complexes
    • Nekludova, L. & Pabo, C. O., Distinctive DNA conformation with enlarged major groove is found in Zn-finger-DNA and other protein-DNA complexes. Proc. Natl. Acad. Sci. USA 91, 6948-6952 (1994).
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 6948-6952
    • Nekludova, L.1    Pabo, C.O.2
  • 27
    • 0028315988 scopus 로고
    • Determinants of repressor/operator recognition from the structure of the trp operator binding site
    • Shakked, Z., Guzikevich-Guerstein, G., Frolow, F., Rabinovich, D., Joakimiak, A. & Sigler, P. B., Determinants of repressor/operator recognition from the structure of the trp operator binding site. Nature 368, 469-473 (1994).
    • (1994) Nature , vol.368 , pp. 469-473
    • Shakked, Z.1    Guzikevich-Guerstein, G.2    Frolow, F.3    Rabinovich, D.4    Joakimiak, A.5    Sigler, P.B.6
  • 28
    • 0001045906 scopus 로고
    • 1H coupling constants in DNA fragments by 2D NMR
    • 1H coupling constants in DNA fragments by 2D NMR. J. Magn. Reson. 79, 429-438 (1988).
    • (1988) J. Magn. Reson. , vol.79 , pp. 429-438
    • Bax, A.1    Lerner, L.2
  • 30
    • 0015511563 scopus 로고
    • Conformational analysis of the sugar ring in nucleosides and nucleotides. A new description using the concept of pseudoro-tation
    • Altona, C. & Sundaralingam, M., Conformational analysis of the sugar ring in nucleosides and nucleotides. A new description using the concept of pseudoro-tation. J. Am. Chem. Soc. 94, 8205-8212 (1972).
    • (1972) J. Am. Chem. Soc. , vol.94 , pp. 8205-8212
    • Altona, C.1    Sundaralingam, M.2
  • 31
    • 0015913888 scopus 로고
    • Conformational analysis of the sugar ring in nucleosides and nucleotides. Improved method for the interpretation of proton magnetic resonance coupling constants
    • Altona, C. & Sundaralingam, M., Conformational analysis of the sugar ring in nucleosides and nucleotides. Improved method for the interpretation of proton magnetic resonance coupling constants. J. Am. Chem. Soc. 95, 2333-2344 (1973).
    • (1973) J. Am. Chem. Soc. , vol.95 , pp. 2333-2344
    • Altona, C.1    Sundaralingam, M.2
  • 32
    • 0023111788 scopus 로고
    • Conformational analysis of the deoxyribofuranose ring in DNA by means of sums of proton-proton coupling constants: A graphical method
    • Rinkel, L. J. & Altona, C., Conformational analysis of the deoxyribofuranose ring in DNA by means of sums of proton-proton coupling constants: A graphical method. J. Biomol. Struct. Dyn 4, 621-649 (1987).
    • (1987) J. Biomol. Struct. Dyn , vol.4 , pp. 621-649
    • Rinkel, L.J.1    Altona, C.2
  • 33
    • 0028815252 scopus 로고
    • Probability assessment of conformational ensembles; Sugar repuckering in DNA duplex solutions
    • Ulyanov, N. B., Schmitz, U., Kumar, A., and James, T. L., Probability assessment of conformational ensembles; Sugar repuckering in DNA duplex solutions. Biophys. J. 68, 13-24 (1995).
    • (1995) Biophys. J. , vol.68 , pp. 13-24
    • Ulyanov, N.B.1    Schmitz, U.2    Kumar, A.3    James, T.L.4
  • 34
    • 0025800219 scopus 로고
    • Static and statistical bending of DNA evaluated by Monte Carlo simulations, Proc
    • Zhurkin, V. B., Ulyanov, N. B., Gorin, A. A. and Jernigan, R. L., Static and statistical bending of DNA evaluated by Monte Carlo simulations, Proc. Natl. Acad. Sci. USA 88, 7046-7050 (1991).
    • (1991) Natl. Acad. Sci. USA , vol.88 , pp. 7046-7050
    • Zhurkin, V.B.1    Ulyanov, N.B.2    Gorin, A.A.3    Jernigan, R.L.4
  • 35
    • 0002470205 scopus 로고
    • Principles governing nucleic acid and polynucleotide conformations
    • Sundaralingam, M. & Rao, S. T., eds. University Park Press, Baltimore USA
    • Sundaralingam, M., Principles Governing Nucleic Acid and Polynucleotide Conformations. In Structure and Conformation of Nucleic Acids and Protein-Nucleic Acid Interactions (Sundaralingam, M. & Rao, S. T., eds.), pp. 487-524, University Park Press, Baltimore USA (1975).
    • (1975) Structure and Conformation of Nucleic Acids and Protein-Nucleic Acid Interactions , pp. 487-524
    • Sundaralingam, M.1
  • 37
    • 0022477409 scopus 로고
    • DNA bending at ade-nine•thymine tracts
    • Koo, H.-S., Wu, H.-M. & Crothers, D. M. (1986). DNA bending at ade-nine•thymine tracts. Nature 320, 501-506.
    • (1986) Nature , vol.320 , pp. 501-506
    • Koo, H.-S.1    Wu, H.-M.2    Crothers, D.M.3
  • 38
    • 0022067646 scopus 로고
    • Base tilt of poly(dA)•poly(dT) and poly(dAT)•poly(dAT) in solution determined by linear dichroism
    • Edmondson, S. P. & Johnson, W. C., Jr. (1985). Base tilt of poly(dA)•poly(dT) and poly(dAT)•poly(dAT) in solution determined by linear dichroism. Biopolymers 24, 825-841.
    • (1985) Biopolymers , vol.24 , pp. 825-841
    • Edmondson, S.P.1    Johnson Jr., W.C.2
  • 39
    • 0027078718 scopus 로고
    • In vitro evolution of intrinsically bent DNA
    • Beutel, B. A. & Gold, L. (1992). In vitro evolution of intrinsically bent DNA. J. Mol. Biol. 228, 803-812.
    • (1992) J. Mol. Biol. , vol.228 , pp. 803-812
    • Beutel, B.A.1    Gold, L.2


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