High-resolution structures of AidH complexes provide insights into a novel catalytic mechanism for N-acyl homoserine lactonase

Acta Crystallographica Section D: Biological Crystallography

Volumn 69, Issue 1, 2013, Pages 82-91

  Gao, Ang ^a,b   Mei, Gui Ying ^c   Liu, Shun ^a,b   Wang, Ping ^a   Tang, Qun ^a   Liu, Yan Ping ^a   Wen, Hui ^a   An, Xiao Min ^a   Zhang, Li Qun ^c   Yan, Xiao Xue ^a   Liang, Dong Cai ^a  

^a INSTITUTE OF BIOPHYSICS   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c CHINA AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CARBOXYLESTERASE; N ACYL HOMOSERINE LACTONASE; N-ACYL HOMOSERINE LACTONASE;

ARTICLE; CATALYSIS; CELL COMMUNICATION; CHEMISTRY; ENZYME ACTIVE SITE; ENZYME SPECIFICITY; ENZYMOLOGY; GENETICS; HYDROLYSIS; OCHROBACTRUM; PATHOGENICITY; PH; QUORUM SENSING; SITE DIRECTED MUTAGENESIS;

CARBOXYLIC ESTER HYDROLASES; CATALYSIS; CATALYTIC DOMAIN; CELL COMMUNICATION; HYDROGEN-ION CONCENTRATION; HYDROLYSIS; MUTAGENESIS, SITE-DIRECTED; OCHROBACTRUM; QUORUM SENSING; SUBSTRATE SPECIFICITY;

ANIMALIA; OCHROBACTRUM SP.;

EID: 84871870441     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444912042369     Document Type: Article

References (30)

1. Adams, P. D. et al. (2010). Acta Cryst. D66, 213-221.
2. Bond, C. S. (2003). Bioinformatics, 19, 311-312.
3. Chowdhary, P. K., Keshavan, N., Nguyen, H. Q., Peterson, J. A., Gonzá lez, J. E. Haines, D. C. (2007). Biochemistry, 46, 14429- 14437.
4. Dong, Y.-H., Wang, L.-H., Xu, J.-L., Zhang, H.-B., Zhang, X.-F. Zhang, L.-H. (2001). Nature (London), 411, 813-817.
5. Dong, Y.-H., Wang, L.-Y. Zhang, L.-H. (2007). Philos. Trans. R. Soc. Lond. B Biol. Sci. 362, 1201-1211.
6. Dong, Y.-H., Xu, J.-L., Li, X.-Z. Zhang, L.-H. (2000). Proc. Natl Acad. Sci. USA, 97, 3526-3531.
7. Dong, Y.-H. Zhang, L.-H. (2005). J. Microbiol. 43, 101-109.
8. Elmi, F., Lee, H.-T., Huang, J.-Y., Hsieh, Y.-C., Wang, Y.-L., Chen, Y.-J., Shaw, S.-Y. Chen, C.-J. (2005). J. Bacteriol. 187, 8470-8476.
9. Emsley, P. Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
10. Holm, L. Sander, C. (1993). J. Mol. Biol. 233, 123-138.
11. Holmquist, M. (2000). Curr. Protein Pept. Sci. 1, 209-235.
12. Huang, J. J., Han, J.-I., Zhang, L.-H. Leadbetter, J. R. (2003). Appl. Environ. Microbiol. 69, 5941-5949.
13. Kim, M. H., Choi, W.-C., Kang, H. O., Lee, J. S., Kang, B. S., Kim, K.-J., Derewenda, Z. S., Oh, T.-K., Lee, C. H. Lee, J.-K. (2005). Proc. Natl Acad. Sci. USA, 102, 17606-17611.
14. Laskowski, R. A., MacArthur, M. W., Moss, D. S. Thornton, J. M. (1993). J. Appl. Cryst. 26, 283-291.
15. Liu, D., Lepore, B.W., Petsko, G. A., Thomas, P.W., Stone, E.M., Fast, W. Ringe, D. (2005). Proc. Natl Acad. Sci. USA, 102, 11882- 11887.
16. Liu, D., Thomas, P. W., Momb, J., Hoang, Q. Q., Petsko, G. A., Ringe, D. Fast, W. (2007). Biochemistry, 46, 11789-11799.
17. Mei, G.-Y., Yan, X.-X., Turak, A., Luo, Z.-Q. Zhang, L.-Q. (2010). Appl. Environ. Microbiol. 76, 4933-4942.
18. Miller, J. H. (1972). Experiments in Molecular Genetics. Cold Spring Harbor Laboratory Press.
19. Murshudov, G. N., Skubá k, P., Lebedev, A. A., Pannu, N. S., Steiner, R. A., Nicholls, R. A., Winn, M. D., Long, F. Vagin, A. A. (2011). Acta Cryst. D67, 355-367.
20. Otwinowski, Z. Minor,W. (1997). Methods Enzymol. 276, 307-326.
21. Park, S.-Y., Lee, S. J., Oh, T.-K., Oh, J.-W., Koo, B.-T., Yum, D.-Y. Lee, J.-K. (2003). Microbiology, 149, 1541-1550.
22. Passador, L., Cook, J. M., Gambello, M. J., Rust, L. Iglewski, B. H. (1993). Science, 260, 1127-1130.
23. Perrakis, A., Morris, R. Lamzin, V. S. (1999). Nature Struct. Biol. 6, 458-463.
24. Piper, K. R., Beck von Bodman, S. Farrand, S. K. (1993). Nature (London), 362, 448-450.
25. Pirhonen, M., Flego, D., Heikinheimo, R. Palva, E. T. (1993). EMBO J. 12, 2467-2476.
26. Riaz, K., Elmerich, C.,Moreira, D., Raffoux, A., Dessaux, Y. Faure, D. (2008). Environ. Microbiol. 10, 560-570.
27. Ulrich, R. L. (2004). Appl. Environ. Microbiol. 70, 6173-6180.
28. Uroz, S., Oger, P. M., Chapelle, E., Adeline, M.-T., Faure, D. Dessaux, Y. (2008). Appl. Environ. Microbiol. 74, 1357-1366.
29. Wang, W.-Z., Morohoshi, T., Ikenoya, M., Someya, N. Ikeda, T. (2010). Appl. Environ. Microbiol. 76, 2524-2530.
30. Zhang, H.-B., Wang, L.-H. Zhang, L.-H. (2002). Proc. Natl Acad. Sci. USA, 99, 4638-4643.