메뉴 건너뛰기




Volumn 30, Issue 1, 2013, Pages 109-122

Waxy phenotype evolution in the allotetraploid cereal broomcorn millet: Mutations at the GBSSI locus in their functional and phylogenetic context

Author keywords

diploidization; domestication; granule bound starch synthase; millet; Panicum miliaceum; waxy starch

Indexed keywords

AMYLOSE; GRANULE BOUND STARCH SYNTHASE I; MICROSATELLITE DNA; UNCLASSIFIED DRUG;

EID: 84871837374     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/mss209     Document Type: Article
Times cited : (31)

References (45)
  • 1
    • 0001924407 scopus 로고    scopus 로고
    • Effects of amylose/amylopectin ratio and baking conditions on resistant starch formation and glycaemic indices
    • A° kerberg A, Liljeberg H, Björck I. 1998. Effects of amylose/amylopectin ratio and baking conditions on resistant starch formation and glycaemic indices. J Cereal Sci. 28:71-80.
    • (1998) J Cereal Sci , vol.28 , pp. 71-80
    • Akerberg, A.1    Liljeberg, H.2    Björck, I.3
  • 2
    • 84866467100 scopus 로고    scopus 로고
    • Origin of waxy common millet, Panicum miliaceum L. in Japan
    • Forthcoming doi 10.1007/s10722-011-9755-9
    • Araki M, Numaoka A, Kawase M, Fukunaga K. Forthcoming. Origin of waxy common millet, Panicum miliaceum L. in Japan. Genet Resour Crop Evol., doi 10.1007/s10722-011-9755-9.
    • Genet Resour Crop Evol
    • Araki, M.1    Numaoka, A.2    Kawase, M.3    Fukunaga, K.4
  • 3
    • 33845682504 scopus 로고    scopus 로고
    • Progress with proso, pearl and other millets
    • Janick J, Whipkey A, editors Alexandria (VA ASHS Press
    • Baltensperger DD. 2002. Progress with proso, pearl and other millets. In: Janick J, Whipkey A, editors. Trends in new crops and new uses. Alexandria (VA): ASHS Press. p. 100-103.
    • (2002) Trends in New Crops and New Uses , pp. 100-103
    • Baltensperger, D.D.1
  • 4
    • 0034958416 scopus 로고    scopus 로고
    • M13-tailed primers improve the readability and usability of microsatellite analyses performed with two different allele-sizing methods
    • Boutin-Ganache I, Raposo M, Raymond M, Deschepper CF. 2001. M13-tailed primers improve the readability and usability of microsatellite analyses performed with two different allele-sizing methods. Biotechniques 31:24-28.
    • (2001) Biotechniques , vol.31 , pp. 24-28
    • Boutin-Ganache, I.1    Raposo, M.2    Raymond, M.3    Deschepper, C.F.4
  • 5
    • 0001247369 scopus 로고
    • Changes in starch granule size and amylose percentage during kernel development in several Zea-Mays-L genotypes
    • Boyer CD, Shannon JC, Garwood DL, Creech RG. 1976. Changes in starch granule size and amylose percentage during kernel development in several Zea-Mays-L genotypes. Cereal Chem. 53:327-337.
    • (1976) Cereal Chem , vol.53 , pp. 327-337
    • Boyer, C.D.1    Shannon, J.C.2    Garwood, D.L.3    Creech, R.G.4
  • 6
    • 79751505110 scopus 로고    scopus 로고
    • CorrSieve: Software for summarising and evaluating STRUCTURE output
    • Campana MG, Hunt HV, Jones H, White J. 2011. CorrSieve: software for summarising and evaluating STRUCTURE output. Mol Ecol Resour. 11:349-352.
    • (2011) Mol Ecol Resour , vol.11 , pp. 349-352
    • Campana, M.G.1    Hunt, H.V.2    Jones, H.3    White, J.4
  • 7
    • 33645389485 scopus 로고    scopus 로고
    • Mechanisms of genomic rearrangements and gene expression changes in plant polyploids
    • Chen ZJ, Ni Z. 2006. Mechanisms of genomic rearrangements and gene expression changes in plant polyploids. BioEssays 28:240-252.
    • (2006) Bio Essays , vol.28 , pp. 240-252
    • Chen, Z.J.1    Ni, Z.2
  • 8
    • 77957084890 scopus 로고    scopus 로고
    • Development and characterization of twenty-five new polymorphic microsatellite markers in proso millet (Panicum miliaceum L.)
    • Cho Y-I, Chung J-W, Lee G-A, Ma K-H, Dixit A, Gwag J-G, Park Y-J. 2010. Development and characterization of twenty-five new polymorphic microsatellite markers in proso millet (Panicum miliaceum L.). Genes Genom. 32:267-273.
    • (2010) Genes Genom , vol.32 , pp. 267-273
    • Cho, Y.-I.1    Chung, J.-W.2    Lee, G.-A.3    Ma, K.-H.4    Dixit, A.5    Gwag, J.-G.6    Park, Y.-J.7
  • 9
    • 78649629037 scopus 로고    scopus 로고
    • Effect of the three waxy null alleles on enzymes associated to wheat starch granules using proteomic approach
    • Debiton C, Bancel E, Chambon C, Rhazi L, Branlard G. 2010. Effect of the three waxy null alleles on enzymes associated to wheat starch granules using proteomic approach. J Cereal Sci. 52:466-474.
    • (2010) J Cereal Sci , vol.52 , pp. 466-474
    • Debiton, C.1    Bancel, E.2    Chambon, C.3    Rhazi, L.4    Branlard, G.5
  • 10
    • 78649630753 scopus 로고    scopus 로고
    • Polymorphism in the GBSS gene affects amylose content in US and European rice germplasm
    • Dobo M, Ayres N,Walker G, ParkWD. 2010. Polymorphism in the GBSS gene affects amylose content in US and European rice germplasm. J Cereal Sci. 52:450-456.
    • (2010) J Cereal Sci , vol.52 , pp. 450-456
    • Dobo, M.1    Ayres, N.2    Walker, G.3    Park, W.D.4
  • 12
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study
    • Evanno G, Regnaut S, Goudet J. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol. 14:2611-2620.
    • (2005) Mol Ecol , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 13
    • 0029808273 scopus 로고    scopus 로고
    • The dosage effect of the wildtype GBSS allele is linear for GBSS activity but not for amylose content: Absence of amylose has a distinct influence on the physicochemical properties of starch
    • Flipse E, Keetels C, Jacobsen E, Visser RGF. 1996. The dosage effect of the wildtype GBSS allele is linear for GBSS activity but not for amylose content: absence of amylose has a distinct influence on the physicochemical properties of starch. Theor Appl Genet. 92:121-127.
    • (1996) Theor Appl Genet , vol.92 , pp. 121-127
    • Flipse, E.1    Keetels, C.2    Jacobsen, E.3    Rgf, V.4
  • 14
    • 78650907684 scopus 로고    scopus 로고
    • Towards a long-term macro-geography of cultural substances: Food and sacrifice traditions in East, West, and South Asia
    • Fuller DQ, Rowlands M. 2009. Towards a long-term macro-geography of cultural substances: food and sacrifice traditions in East, West, and South Asia. Chinese Rev Anthr. 12:1-37.
    • (2009) Chinese Rev Anthr , vol.12 , pp. 1-37
    • Fuller, D.Q.1    Rowlands, M.2
  • 15
    • 34547110840 scopus 로고    scopus 로고
    • An MCMC approach for joint inference of population structure and inbreeding rates from multilocus genotype data
    • Gao H,Williamson S, Bustamante C. 2007. An MCMC approach for joint inference of population structure and inbreeding rates from multilocus genotype data. Genetics 176:1635-1651.
    • (2007) Genetics , vol.176 , pp. 1635-1651
    • Gao Hwilliamson, S.1    Bustamante, C.2
  • 16
    • 58849112622 scopus 로고    scopus 로고
    • Evaluation of the waxy endosperm trait in proso millet (Panicum miliaceum
    • Graybosch RA, Baltensperger DD. 2009. Evaluation of the waxy endosperm trait in proso millet (Panicum miliaceum). Plant Breeding 128: 70-73.
    • (2009) Plant Breeding , vol.128 , pp. 70-73
    • Graybosch, R.A.1    Baltensperger, D.D.2
  • 17
    • 80054118681 scopus 로고    scopus 로고
    • Genetic diversity and phylogeography of broomcorn millet (Panicum miliaceum L.) across Eurasi
    • Hunt HV, Campana MG, Lawes MC, Park Y-J, Bower MA, Howe CJ, Jones MK. 2011. Genetic diversity and phylogeography of broomcorn millet (Panicum miliaceum L.) across Eurasia. Mol Ecol. 20: 4756-4771.
    • (2011) Mol Ecol , vol.20 , pp. 4756-4771
    • Hunt, H.V.1    Campana, M.G.2    Lawes, M.C.3    Park, Y.-J.4    Bower, M.A.5    Howe, C.J.6    Jones, M.K.7
  • 18
    • 77953790838 scopus 로고    scopus 로고
    • Molecular basis of the waxy phenotype in broomcorn millet (Panicum miliaceum L.)
    • Hunt HV, Denyer K, Packman LC, Jones MK, Howe CJ. 2010. Molecular basis of the waxy phenotype in broomcorn millet (Panicum miliaceum L.). Mol Biol Evol. 27:1478-1494.
    • (2010) Mol Biol Evol , vol.27 , pp. 1478-1494
    • Hunt, H.V.1    Denyer, K.2    Packman, L.C.3    Jones, M.K.4    Howe, C.J.5
  • 19
    • 33845472614 scopus 로고    scopus 로고
    • Between fertile crescents: Minor grain crops and agricultural origins
    • Jones MK, editor Cambridge Oxbow Books
    • Jones MK. 2004. Between fertile crescents: minor grain crops and agricultural origins. In: Jones MK, editor. Traces of ancestry: studies in honour of Colin Renfrew. Cambridge: Oxbow Books. p. 127-135.
    • (2004) Traces of Ancestry: Studies in Honour of Colin Renfrew , pp. 127-135
    • Jones, M.K.1
  • 20
    • 0019869334 scopus 로고
    • The molecular basis of dominance
    • Kacser H, Burns JA. 1981. The molecular basis of dominance. Genetics 97: 639-666.
    • (1981) Genetics , vol.97 , pp. 639-666
    • Kacser, H.1    Burns, J.A.2
  • 21
    • 33745204659 scopus 로고    scopus 로고
    • Some physical and nutritional characteristics of genetically modified potatoes varying in amylose/amylopectin ratios
    • Karlsson ME, Leeman AM, Björck IME, Eliasson A-C. 2007. Some physical and nutritional characteristics of genetically modified potatoes varying in amylose/amylopectin ratios. Food Chem. 100:136-146.
    • (2007) Food Chem , vol.100 , pp. 136-146
    • Karlsson, M.E.1    Leeman, A.M.2    Ime, B.3    Eliasson, A.-C.4
  • 22
    • 33244467305 scopus 로고    scopus 로고
    • The fate of mutations surfing on the wave of a range expansion
    • Klopfstein S, Currat M, Excoffier L. 2006. The fate of mutations surfing on the wave of a range expansion. Mol Biol Evol. 23: 482-490.
    • (2006) Mol Biol Evol , vol.23 , pp. 482-490
    • Klopfstein, S.1    Currat, M.2    Excoffier, L.3
  • 23
    • 0001223089 scopus 로고
    • Rapid method for estimation of amylose in maize starches
    • Knutson CA, Grove MJ. 1994. Rapid method for estimation of amylose in maize starches. Cereal Chem. 71:469-471.
    • (1994) Cereal Chem , vol.71 , pp. 469-471
    • Knutson, C.A.1    Grove, M.J.2
  • 25
    • 18744382780 scopus 로고    scopus 로고
    • PowerMarker: Integrated analysis environment for genetic marker data
    • Liu K,Muse SV. 2005. PowerMarker: integrated analysis environment for genetic marker data. Bioinformatics 21:2128-2129.
    • (2005) Bioinformatics , vol.21 , pp. 2128-2129
    • Liu Kmuse, S.V.1
  • 26
    • 77950724754 scopus 로고    scopus 로고
    • River valleys and foothills: Changing archaeological perceptions of North China's earliest farms
    • Liu X, Hunt HV, Jones MK. 2009. River valleys and foothills: changing archaeological perceptions of North China's earliest farms. Antiquity 83:82-95.
    • (2009) Antiquity , vol.83 , pp. 82-95
    • Liu, X.1    Hunt, H.V.2    Jones, M.K.3
  • 27
    • 66149153139 scopus 로고    scopus 로고
    • Earliest domestication of common millet (Panicum miliaceum) in East Asia extended to 10,000 years ago
    • 13 co-authors
    • Lu H, Zhang J, Liu K, et al. (13 co-authors). 2009. Earliest domestication of common millet (Panicum miliaceum) in East Asia extended to 10,000 years ago. Proc Natl Acad Sci USA. 106:7367-7372.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 7367-7372
    • Lu, H.1    Zhang, J.2    Liu, K.3
  • 28
    • 0020965531 scopus 로고
    • Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data
    • Nei M, Tajima F, Tateno Y. 1983. Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data. J Mol Evol. 19: 153-170.
    • (1983) J Mol Evol , vol.19 , pp. 153-170
    • Nei, M.1    Tajima, F.2    Tateno, Y.3
  • 30
    • 0036743674 scopus 로고    scopus 로고
    • The altered pattern of amylose accumulation in the endosperm of low-amylose barley cultivars is attributable to a single mutant allele of granule-bound starch synthase i with a deletion in the 5' non-coding region
    • Patron NJ, Smith AM, Fahy BF, Hylton CM, Naldrett MJ, Rossnagel BG, Denyer K. 2002. The altered pattern of amylose accumulation in the endosperm of low-amylose barley cultivars is attributable to a single mutant allele of granule-bound starch synthase I with a deletion in the 5' non-coding region. Plant Physiol. 130:190-198.
    • (2002) Plant Physiol , vol.130 , pp. 190-198
    • Patron, N.J.1    Smith, A.M.2    Fahy, B.F.3    Hylton, C.M.4    Naldrett, M.J.5    Rossnagel, B.G.6    Denyer, K.7
  • 31
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donelly P. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donelly, P.3
  • 32
    • 84871837003 scopus 로고    scopus 로고
    • R Core Development Team Vienna: R Foundation for Statistical Computing
    • R Core Development Team. 2005. R Version 2.10.1. Vienna: R Foundation for Statistical Computing.
    • (2005) R Version 2.10.1
  • 33
    • 84989076130 scopus 로고
    • A study of factors affecting amylose content of sorghum determined by an automated-method
    • Ring SH, Akingbala JO, Rooney LW. 1989. A study of factors affecting amylose content of sorghum determined by an automated-method. Starch-Stärke 41:457-461.
    • (1989) Starch-Stärke , vol.41 , pp. 457-461
    • Ring, S.H.1    Akingbala, J.O.2    Rooney, L.W.3
  • 34
    • 85106599111 scopus 로고    scopus 로고
    • Glutinous-endosperm starch food culture specific to Eastern and Southeastern Asia
    • Ellen R, Fukui K, editors Oxford Berg
    • Sakamoto S. 1996. Glutinous-endosperm starch food culture specific to Eastern and Southeastern Asia. In: Ellen R, Fukui K, editors. Redefining nature: ecology, culture and domestication. Oxford: Berg. p. 215-231.
    • (1996) Redefining Nature: Ecology, Culture and Domestication , pp. 215-231
    • Sakamoto, S.1
  • 35
    • 57149120558 scopus 로고    scopus 로고
    • Variation in granule-bound starch synthase i (GBSSI) loci amongst Australian wild cereal relatives (Poaceae
    • Shapter FM, Eggler P, Lee LS, Henry RJ. 2009. Variation in granule-bound starch synthase I (GBSSI) loci amongst Australian wild cereal relatives (Poaceae). J Cereal Sci. 49:4-11.
    • (2009) J Cereal Sci , vol.49 , pp. 4-11
    • Shapter, F.M.1    Eggler, P.2    Lee, L.S.3    Henry, R.J.4
  • 36
    • 0002046676 scopus 로고
    • Isolation and analysis of starch from single kernels of wheat and barley
    • South JB, Morrison WR. 1990. Isolation and analysis of starch from single kernels of wheat and barley. J Cereal Sci. 12:43-51.
    • (1990) J Cereal Sci , vol.12 , pp. 43-51
    • South, J.B.1    Morrison, W.R.2
  • 37
    • 0002638681 scopus 로고
    • Proteins associated with the surface of wheat starch granules purified by centrifuging through caesium chloride
    • Sulaiman BD, Morrison WR. 1990. Proteins associated with the surface of wheat starch granules purified by centrifuging through caesium chloride. J Cereal Sci. 12:53-61.
    • (1990) J Cereal Sci , vol.12 , pp. 53-61
    • Sulaiman, B.D.1    Morrison, W.R.2
  • 39
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0.Mol Biol Evol. 24:1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 40
    • 84989004379 scopus 로고
    • Polymorphism of two waxy proteins in the Emmer group of tetraploid wheat, Triticum-Dicoccoides, T-Dicoccum, and T-Durum
    • Yamamori M, Nakamura T, Nagamine T. 1995. Polymorphism of two waxy proteins in the Emmer group of tetraploid wheat, Triticum-Dicoccoides, T-Dicoccum, and T-Durum. Plant Breeding 114:215-218.
    • (1995) Plant Breeding , vol.114 , pp. 215-218
    • Yamamori, M.1    Nakamura, T.2    Nagamine, T.3
  • 41
    • 0033979756 scopus 로고    scopus 로고
    • Differential effects of Wx-A1,-B1, and-D1 protein deficiencies on apparent amylose content and starch pasting properties in common wheat
    • Yamamori M, Quynh NT. 2000. Differential effects of Wx-A1,-B1, and-D1 protein deficiencies on apparent amylose content and starch pasting properties in common wheat. Theor Appl Genet. 100:32-38.
    • (2000) Theor Appl Genet , vol.100 , pp. 32-38
    • Yamamori, M.1    Quynh, N.T.2
  • 42
    • 2442548838 scopus 로고    scopus 로고
    • Identification of SNPs in the waxy gene among glutinous rice cultivars and their evolutionary significance during the domestication process of rice
    • Yamanaka S, Nakamura I, Watanabe KN, Sato Y-I. 2004. Identification of SNPs in the waxy gene among glutinous rice cultivars and their evolutionary significance during the domestication process of rice. Theor Appl Genet. 108:1200-1204.
    • (2004) Theor Appl Genet , vol.108 , pp. 1200-1204
    • Yamanaka, S.1    Nakamura, I.2    Watanabe, K.N.3    Sato, Y.-I.4
  • 44
    • 60149098028 scopus 로고    scopus 로고
    • Wild plant foods and vegeculture
    • Yoshida S, Matthews PJ, editors Osaka: Japan Centre for Area Studies, National Museum of Ethnology
    • Yoshida S. 2002. Wild plant foods and vegeculture. In: Yoshida S, Matthews PJ, editors. Vegeculture in Eastern Asia and Oceania. Osaka: Japan Centre for Area Studies, National Museum of Ethnology. p. 31-44.
    • (2002) Vegeculture in Eastern Asia and Oceania , pp. 31-44
    • Yoshida, S.1
  • 45
    • 77952466937 scopus 로고    scopus 로고
    • Starch: Its metabolism, evolution, and biotechnological modification in plants
    • Zeeman SC, Kossmann J, Smith AM. 2010. Starch: its metabolism, evolution, and biotechnological modification in plants. Annu Rev Plant Biol. 61:209-234.
    • (2010) Annu Rev Plant Biol , vol.61 , pp. 209-234
    • Zeeman, S.C.1    Kossmann, J.2    Smith, A.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.