The future of DNA sequence archiving

GigaScience

Volumn 1, Issue 1, 2012, Pages

  Cochrane, Guy ^a   Cook, Charles E ^a   Birney, Ewan ^a  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

Archive; Compression; DNA; Image; Sequence; Storage

Indexed keywords

ARCHIVING COST; CLASSIFICATION; COST; COST UTILITY ANALYSIS; DATA BASE; DATA LOSS; DATA PROCESSING; DNA SEQUENCE; EXPERIMENTAL DATA COST; INFORMATION DISSEMINATION; INFORMATION PROCESSING; PRIORITY JOURNAL; REPLACEMENT COST; REVIEW; SEQUENCE ARCHIVING;

EID: 84871826374     PISSN: None     EISSN: 2047217X     Source Type: Journal    
DOI: 10.1186/2047-217X-1-2     Document Type: Review

References (10)

1. Sanger F, Air GM, Barrell BG, Brown NL, Coulson AR, Fiddes CA, Hutchison CA, Slocombe PM, Smith M. Nucleotide sequence of bacteriophage phi X174 DNA. Nature 1977, 265:687-695. 10.1038/265687a0, 870828.
2. Fleischmann R, Adams M, White O, Clayton R, Kirkness E, Kerlavage A, Bult C, Tomb J, Dougherty B, Merrick J. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 1995, 269:496-512. 10.1126/science.7542800, 7542800.
3. Karsch-Mizrachi I, Nakamura Y, Cochrane G. The International Nucleotide Sequence Database Collaboration. Nucleic Acids Research 2012, 40(1):33-37.
4. Kodama Y, Shumway M, Leinonen R. on behalf of the International Nucleotide Sequence Database Collaboration. The sequence read archive: explosive growth of sequencing data. Nucleic Acids Research 2012, 40(1):54-56.
5. Fritz MH, Leinonen R, Cochrane G, Birney E. Efficient storage of high throughput DNA sequencing data using reference-based compression. Genome Research 2011, 21:734-740. 10.1101/gr.114819.110, 3083090, 21245279.
6. Euro-Bioimaging. http://www.eurobioimaging.eu/
7. Caporaso JG, Paszkiewicz K, Field D, Knight R, Gilbert JA. The Western English Channel contains a persistent microbial seed bank. ISME Journal 2011,
8. Salzberg SL. Dunning Hotopp JC, Delcher AL, Pop M, Smith DR, Eisen MB, Nelson WC: Serendipitous discovery of Wolbachia genomes in multiple Drosophila species. Genome Biology 2005 6:R23 and. Genome Biology 2005, 6(7):402. 10.1186/gb-2005-6-7-402, 1175986, 15998463.
9. Cunningham F, Rios D, Griffiths M, Smith J, Ning Z, Cox T, Flicek P, Marin-Garcin P, Herrero J, Rogers J, et al. TranscriptSNPView: a genome-wide catalog of mouse coding variation. Nature Genetics 2006, 38:853. 2610433, 16874317.
10. Parkhill J, Birney E, Kersey P. Genomic information infrastructure after the deluge. Genome Biology 2010, 11:402. 10.1186/gb-2010-11-7-402, 2926780, 20670392.