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Volumn 29, Issue 1, 2013, Pages 114-116

MetaGeneTack: Ab initio detection of frameshifts in metagenomic sequences

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; COMPUTER PROGRAM; EVALUATION; FRAMESHIFT MUTATION; METAGENOMICS; METHODOLOGY; STATISTICAL MODEL;

EID: 84871820647     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts636     Document Type: Article
Times cited : (13)

References (9)
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    • 77953676254 scopus 로고    scopus 로고
    • GeneTack: Frameshift identification in protein coding sequences by the Viterbi algorithm
    • Antonov, I. et al. (2010) GeneTack: frameshift identification in protein coding sequences by the Viterbi algorithm. J. Bioinform. Comput. Biol., 8, 535-551.
    • (2010) J. Bioinform. Comput. Biol. , vol.8 , pp. 535-551
    • Antonov, I.1
  • 2
    • 0035875343 scopus 로고    scopus 로고
    • GeneMarkS: A self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
    • Besemer, J. et al. (2001) GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nucleic Acids Res., 29, 2607-2618. (Pubitemid 32600318)
    • (2001) Nucleic Acids Research , vol.29 , Issue.12 , pp. 2607-2618
    • Besemer, J.1    Lomsadze, A.2    Borodovsky, M.3
  • 3
    • 0033214628 scopus 로고    scopus 로고
    • Heuristic approach to deriving models for gene finding
    • DOI 10.1093/nar/27.19.3911
    • Besemer, J. et al. (1999) Heuristic approach to deriving models for gene finding. Nucleic Acids Res., 27, 3911-3920. (Pubitemid 29454440)
    • (1999) Nucleic Acids Research , vol.27 , Issue.19 , pp. 3911-3920
    • Besemer, J.1    Borodovsky, M.2
  • 4
    • 74049094093 scopus 로고    scopus 로고
    • The effect of sequencing errors on metagenomic gene prediction
    • Hoff, K.J. (2009) The effect of sequencing errors on metagenomic gene prediction. BMC Genomics, 10, 520.
    • (2009) BMC Genomics , vol.10 , pp. 520
    • Hoff, K.J.1
  • 5
    • 57349141505 scopus 로고    scopus 로고
    • A bioinformatician's guide to metagenomics
    • Kunin, V. et al. (2008) A bioinformatician's guide to metagenomics. Microbiol. Mol. Biol. Rev., 72, 557.
    • (2008) Microbiol. Mol. Biol. Rev. , vol.72 , pp. 557
    • Kunin, V.1
  • 6
    • 84856770811 scopus 로고    scopus 로고
    • Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA samples
    • Luo, C. et al. (2012) Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA samples. PLoS One, 7, e30087.
    • (2012) PLoS One , vol.7
    • Luo, C.1
  • 7
    • 78651326786 scopus 로고    scopus 로고
    • FragGeneScan: Predicting genes in short and error-prone reads
    • Rho, M. et al. (2010) FragGeneScan: predicting genes in short and error-prone reads. Nucleic Acids Res., 38, e191.
    • (2010) Nucleic Acids Res. , vol.38
    • Rho, M.1
  • 8
    • 77649200259 scopus 로고    scopus 로고
    • A primer on metagenomics
    • Wooley, J.C. et al. (2010) A primer on metagenomics. PLoS Comput. Biol., 6, e1000667.
    • (2010) PLoS Comput. Biol. , vol.6
    • Wooley, J.C.1
  • 9
    • 77955902981 scopus 로고    scopus 로고
    • Ab initio gene identification in metagenomic sequences
    • Zhu, W. et al. (2010) Ab initio gene identification in metagenomic sequences. Nucleic Acids Res., 38, e132.
    • (2010) Nucleic Acids Res. , vol.38
    • Zhu, W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.