Phylogenetic relationships among global populations of Pseudomonas syringae pv. actinidiae

Phytopathology

Volumn 102, Issue 11, 2012, Pages 1034-1044

  Chapman, J R ^a,f   Taylor, R K ^a   Weir, B S ^b   Romberg, M K ^a   Vanneste, J L ^c   Luck, J ^d,e   Alexander, B J R ^a  

^a Ministry for Primary Industries   (New Zealand)

^b LANDCARE RESEARCH   (New Zealand)

^c THE NEW ZEALAND INSTITUTE FOR PLANT AND FOOD RESEARCH LIMITED   (New Zealand)

^d DEPARTMENT OF PRIMARY INDUSTRIES   (Australia)

^e LA TROBE UNIVERSITY   (Australia)

^f LINNAEUS UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA;

ACTINIDIA; ARTICLE; ASIA; AUSTRALIA AND NEW ZEALAND; BACTERIAL GENE; CHEMISTRY; CLASSIFICATION; EUROPE; FRUIT; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR EVOLUTION; MULTIGENE FAMILY; MULTILOCUS SEQUENCE TYPING; PHYLOGENY; PLANT DISEASE; PSEUDOMONAS SYRINGAE; SOUTH AMERICA;

ACTINIDIA; ASIA; AUSTRALASIA; DNA, BACTERIAL; EUROPE; EVOLUTION, MOLECULAR; FRUIT; GENES, BACTERIAL; MULTIGENE FAMILY; MULTILOCUS SEQUENCE TYPING; PHYLOGENY; PLANT DISEASES; PSEUDOMONAS SYRINGAE; SOUTH AMERICA;

ACTINIDIA; ACTINIDIA DELICIOSA; PSEUDOMONAS SYRINGAE; PSEUDOMONAS SYRINGAE PV. ACTINIDIAE;

EID: 84871775296     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-03-12-0064-R     Document Type: Article

References (51)

1. Abelleira, A., López, M. M., Peñalver, J., Aguín, O., Mansilla, J. P., Picoaga, A., and García, M. J. 2011. First report of bacterial canker of kiwifruit caused by Pseudomonas syringae pv. actinidiae in Spain. Plant Dis. 95:1583.
2. Badel, J. L., Shimizu, R., Oh, H.-S., and Collmer, A. 2006. A Pseudomonas syringae pv. tomato avrE1/hopM1 mutant is severely reduced in growth and lesion formation in tomato. Mol. Plant-Microbe Interact. 19:99-111.
3. Balestra, G. M., Mazzaglia, A., Quattruci, A., Renzi, M., and Rossetti, A. 2009. Current status of bacterial canker spread on kiwifruit in Italy. Australas. Plant Dis. Notes 4:34-36.
4. Balestra, G. M., Mazzaglia, A., Spinelli, R., Graziani, S., Quattrucci, A., and Rossetti, A. 2008. Bacterial canker on Actinidia chinensis (Cancro batterico su Actinidia chinensis). Inf. Agrar. 38:75-76.
5. Balestra, G. M., Renzi, M., and Mazzaglia, A. 2010. First report of bacterial canker of Actinidia deliciosa caused by Pseudomonas syringae pv. actinidiae in Portugal. New Dis. Rep. 22:10.
6. Bastas, K. K., and Karakaya, A. 2012. First report of bacterial canker of kiwifruit caused by Pseudomonas syringae pv. actinidiae in Turkey. Plant Dis. 96:452.
7. Bender, C. L., Alarcón-Chaidez, F., and Gross, D. C. 1999. Pseudomonas syringae phytotoxins: mode of action, regulation and biosynthesis by peptide and polyketide synthetases. Microbiol. Mol. Biol. Rev. 63:266-292.
8. Bull, C. T., Clarke, C. R., Cai, R., Vinatzer, B. A., Jardini, T. M., and Koike, S. T. 2011. Multilocus sequence typing of Pseudomonas syringae sensu lato confirms previously described genomospecies and permits rapid identification of P. syringae pv. coriandricola and P. syringae pv. apii causing bacterial leaf spot on parsley. Phytopathology 101:847-858.
9. Chang, J. H., Urbach, J. M., Law, T. F., Arnold, L. W., Hu, A., Gombar, S., Grant, S. R., Ausubel, F. M., and Dangl, J. L. 2005. A highthroughput, near-saturating screen for type III effector genes from Pseudomonas syringae. Proc. Natl. Acad. Sci. USA 102:2549-2554.
10. Chapman, J., Taylor, R., and Alexander, B. 2011. Second Report on Characterisation of Pseudomonas syringae pv. actinidiae (Psa) isolates in New Zealand. Ministry of Agriculture and Forestry.
11. Cheng, H., Li, Y., Wan, S., Zhang, J., Ping, Q., Li, G., and Xing, J. 1995. Pathogenic identification of kiwifruit bacterial canker in Anhui. J. Anhui University, unpaginated. http://en.cnki.com.cn/Article-en/CJFDTOTALANHU503.006. htm
12. EPPO. 2011. First report of Pseudomonas syringae pv. actinidiae in Switzerland. Number 8, 2011/168. http://archives.eppo.org/EPPOReporting/2011/ Rse-1108.pdf
13. EPPO. 2011. First report of Pseudomonas syringae pv. actinidiae in Chile. Number 3, 2011/055. http://archives.eppo.org/EPPOReporting/2011/Rse-1103.pdf
14. EPPO. 2011. First report of Pseudomonas syringae pv. actinidiae in Australia. Number 6, 2011/130. http://archives.eppo.org/EPPOReporting/2011/Rse- 1106.pdf
15. EPPO. 2011. Express Pest Risk Analysis for Pseudomonas syringae pv. actinidiae. EPPO Report 11-17237. http://www.ersa.fvg.it/istituzionale/servizio- fitosanitario-chimico/circa/organismo-nocivo/batteri/pseudomonas-syringae-pv- actinidiae/pest-risk-analisys/EPPO%20Draft-Express-PRA.docx
16. Everett, K. R., Taylor, R. K., Romberg, M. R., Rees-George, J. R. G., Fullerton, R., Vanneste, J. L., and Manning, M. A. 2011. First report of Pseudomonas syringae pv. actinidiae causing kiwifruit bacterial canker in New Zealand. Australas. Plant Dis. Notes 6:67-71.
17. Ferrante, P., Clarke, C. R., Cavanaugh, C. A., Michelmore, R. W., Buonaurio, R., and Vinatzer, B. 2009. Contributions of the effector gene hopQ1-1 to differences in host range between Pseudomonas syringae pv. phaseolicola and P. syringae pv. tabaci. Mol. Plant Pathol. 10:837-842.
18. Ferrante, P., and Scortichini, M. 2009. Identification of Pseudomonas syringae pv. actinidiae as causal agent of bacterial canker of yellow kiwifruit (Actinidia chinensis Planchon) in Central Italy. J. Phytopathol. 157:768-770.
19. Ferrante, P., and Scortichini, M. 2010. Molecular and phenotypic features of Pseudomonas syringae pv. actinidiae isolated during recent epidemics of bacterial canker on yellow kiwifruit (Actinidia chinensis) in central Italy. Plant Pathol. 59:954-962.
20. Ham, J. H., Majerczak, D. R., Nomura, K., Mecey, C., Uribe, F., He, S.- Y., Mackey, D., and Coplin, D. L. 2009. Multiple activities of the plant pathogen type III effector proteins WtsE and AvrE require WxxxE motifs. Mol. Plant-Microbe Interact. 22:703-712.
21. Hwang, M. S. H., Morgan, R. L., Sarkar, S. F., Wang, P. W., and Guttman, D. S. 2005. Phylogenetic characterization of virulence and resistance phenotypes of Pseudomonas syringae. Appl. Environ. Microbiol. 71:5182-5191.
22. King, E. O., Ward, M. K., and Raney, D. E. 1954. Two simple media for the demonstration of pyocyanin and fluorescein. J. Lab. Clin. Med. 44:301-307.
23. Koh, Y., and Lee, D. 1992. Canker of kiwifruit by Pseudomonas syringae pv. morsprunorum. Korean J. Plant Pathol. 8:119-122.
24. Koh, Y., and Nou, I. 2002. DNA markers for identification of Pseudomonas syringae pv. actinidiae. Mol. Cells 13:309-314.
25. Koh, Y. J., Cha, B. J., Chung, H. J., and Lee, D. H. 1994. Outbreak and spread of bacterial canker in kiwifruit. Korean J. Plant Pathol. 10:68-72.
26. Li, X., Lin, H., Zhang, W., Zou, Y., Zhang, J., Tang, X., and Zhou, J.-M. 2005. Flagellin induces innate immunity in nonhost interactions that is suppressed by Pseudomonas syringae effectors. Proc. Natl. Acad. Sci. USA 102:12990-12995.
27. Lindeberg, M., Stavrinides, J., Chang, J. H., Alfano, J. R., Collmer, A., Dangl, J. L., Greenberg, J. T., Mansfield, J. W., and Guttman, D. S. 2005. Proposed guidelines for a unified nomenclature and phylogenetic analysis of type III hop effector proteins in the plant pathogen Pseudomonas syringae. Mol. Plant-Microbe Interact. 18:275-282.
28. Lorang, J. M., and Keen. N. T. 1995. Characterization of avrE from Pseudomonas syringae pv. tomato: An hrp-linked avirulence locus consisting of at least two transcriptional units. Mol. Plant-Microbe Interact. 8:49-57.
29. Lorang, J. M., Shen, H., Kobayashi, D., Cooksey, D., and Keen, N. T. 1994. avrA and avrE in Pseudomonas syringae pv. tomato PT23 play a role in virulence on tomato plants. Mol. Plant-Microbe Interact. 7:505-515.
30. Marcelletti, S., Ferrante, P., Petriccione, M., Firrao, G., and Scortichini, M. 2011. Pseudomonas syringae pv. actinidiae draft genomes comparison reveal strain-specific features involved in adaptation and virulence to Actinidia species. PLoS One 6:e27297.
31. Mazzaglia, A., Renzi, M., and Balestra, G. M. 2011. Comparison and utilization of different PCR-based approaches for molecular typing of Pseudomonas syringae pv. actinidiae strains from Italy. Can. J. Plant Pathol. 33:8-18.
32. Mazzaglia, A., Studholme, D. J., Taratufolo, M. C., Cai, R., Almeida, N. F., Goodman, T., Guttman, D. S., Vinatzer, B. A., and Balestra, G. M. 2012. Pseudomonas syringae pv. actinidiae (PSA) isolates from recent bacterial canker of kiwifruit outbreaks belong to the same genetic lineage. PLoS One 7:e36518.
33. Maiden, M. C. J., Bygraves, J. A., Feil, E., Morelli, G. Russell, J. E., Urwin, R., Zhang, Q., Zhou, J., and Zurth, K. et al. 1998. Multilocus sequence typing: A protable approach to the identification of clones within populations of pathogenic microorganisms. Proc. Natl. Acad. Sci. 95:3140-3145.
34. Nylander, J. A. A. 2004. MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University.
35. Park, D., Than, D., Everett, K., Rees-George, J., Romberg, M. K., and Alexander, B. J. R. 2011. Screening of historical isolates stored in New Zealand culture collections for Pseudomonas syringae pv. actinidiae. N. Z. Plant Prot. 64:292.
36. Parkinson, N., Bryant, R., Bew, J., and Elphinstone, J. 2011. Rapid phylogenetic identification of members of the Pseudomonas syringae species complex using the rpoD locus. Plant Pathol. 60:338-344.
37. Rees-George, J., Vanneste, J. L., Cornish, D. A., Pushparajah, I. P. S., Yu, J., Templeton, M. D., and Everett, K. R. 2010. Detection of Pseudomonas syringae pv. actinidiae using polymerase chain reaction (PCR) primers based on the 16S-23S rDNA intertranscribed spacer region and comparison with PCR primers based on other gene regions. Plant Pathol. 59:453-464.
38. Rohmer, L., Guttman, D. S., and Dangl, J. L. 1994. Diverse evolutionary mechanisms shape the type III effector virulence factor repertoire in the plant pathogen Pseudomonas syringae. Genetics 167:1341-1360.
39. Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M. A., Huelsenbeck, J. P. 2012. MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Syst. Biol. 61:539-542.
40. Sarkar, S., and Guttman, D. 2004. The evolution of the core genome of Pseudomonas syringae, a highly clonal, endemic plant pathogen. Appl. Environ. Microbiol. 70:1999-2012.
41. Sarkar, S. F., Gordon, J. S., Martin, G. B., and Guttman, D. S. 2006. Comparative genomics of host-specific virulence in Pseudomonas syringae. Genetics 174:1041-1056.
42. Scortichini, M. 1994. Occurrence of Pseudomonas syringae pv. actinidiae on kiwifruit in Italy. Plant Pathol. 43:1035-1038.
43. Scortichini, M., Marchesi, U., and Di Prospero, P. 2002. Genetic relatedness among Pseudomonas avellanae, P. syringae pv. theae and P.s. pv. actinidiae, and their identification. Eur. J. Plant Pathol. 108:269-278.
44. Serizawa, S., Ichikawa, T., Takikawa, Y., Tsuyumu, S., and Goto, M. 1989. Occurrence of bacterial canker of kiwifruit in Japan: description of symptoms, isolation of the pathogen and screening of bactericides. Ann. Phytopathol. Soc. Jpn. 55:427-436.
45. Shim Han, H., Jung Oak, E., Jin Koh, Y., Hur, J.-S., and Sung Jung, J. 2003. Characterization of Pseudomonas syringae pv. actinidiae isolated in Korea and genetic relationship among coronatine-producing pathovars based on cmaU sequences. Acta Hortic. 610:403-408.
46. Takikawa, Y., Serizawa, S., Ichikawa, T., Tsuyumu, S., and Goto, M. 1989. Pseudomonas syringae pv. actinidiae sp. nov.: the causal bacterium of canker in kiwifruit in Japan. Ann. Phytopathol. Soc. Jpn. 55:437-444.
47. Vanneste, J. L., Kay, C., Onorato, R., Yu, J., Cornish, D. A., Spinelli, F., and Max, S. 2011. Recent advances in the characterisation and control of Pseudomonas syringae pv. actinidiae, the causal agent of bacterial canker on kiwifruit. Acta Hortic. 913:443-455.
48. Vanneste, J. L., Poliakoff, F., Audusseau, C., Cornish, D. A., Paillard, S., Rivoal, C., and Yu, J. 2011. First report of Pseudomonas syringae pv. actinidiae, the causal agent of bacterial canker on kiwifruit in France. Plant Dis. 95:1311.
49. Vanneste, J. L., Yu, J., and Cornish, D. A. 2010. Molecular characterisations of Pseudomonas syringae pv. actinidiae strains isolated from the recent outbreak of bacterial canker on kiwifruit in Italy. N. Z. Plant Prot. 63:7-14.
50. Wang, Z., Tang, X., and Liu, S. 1992. Identification of the pathogenic bacterium for bacterial canker on Actinidia in Sichuan. J. Southwest Agricultural University, unpaginated. http://en.cnki.com.cn/Article-en/ CJFDTOTAL-XNND199206007.htm
51. Zhang, Z., Li, J., Zhao, X.-Q., Wang, J., Wong, G. Q.-S., and Yu, J. 2006. KaKs-Calculator: Calculating Ka and Ks through model selection and model averaging. Genomics Proteomics Bioinf. 4:259-263.