-
1
-
-
33744948144
-
Human Mediator enhances basal transcription by facilitating recruitment of transcription factor IIB during preinitiation complex assembly
-
Baek H.J., Kang Y.K., Roeder R.G. Human Mediator enhances basal transcription by facilitating recruitment of transcription factor IIB during preinitiation complex assembly. J. Biol. Chem. 2006, 281:15172-15181.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 15172-15181
-
-
Baek, H.J.1
Kang, Y.K.2
Roeder, R.G.3
-
2
-
-
33749664150
-
Two functional modes of a nuclear receptor-recruited arginine methyltransferase in transcriptional activation
-
Barrero M.J., Malik S. Two functional modes of a nuclear receptor-recruited arginine methyltransferase in transcriptional activation. Mol. Cell 2006, 24:233-243.
-
(2006)
Mol. Cell
, vol.24
, pp. 233-243
-
-
Barrero, M.J.1
Malik, S.2
-
3
-
-
33750442129
-
Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II
-
Bondarenko V.A., Steele L.M., Ujvári A., Gaykalova D.A., Kulaeva O.I., Polikanov Y.S., Luse D.S., Studitsky V.M. Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II. Mol. Cell 2006, 24:469-479.
-
(2006)
Mol. Cell
, vol.24
, pp. 469-479
-
-
Bondarenko, V.A.1
Steele, L.M.2
Ujvári, A.3
Gaykalova, D.A.4
Kulaeva, O.I.5
Polikanov, Y.S.6
Luse, D.S.7
Studitsky, V.M.8
-
4
-
-
0029759928
-
Activator-dependent regulation of transcriptional pausing on nucleosomal templates
-
Brown S.A., Imbalzano A.N., Kingston R.E. Activator-dependent regulation of transcriptional pausing on nucleosomal templates. Genes Dev. 1996, 10:1479-1490.
-
(1996)
Genes Dev.
, vol.10
, pp. 1479-1490
-
-
Brown, S.A.1
Imbalzano, A.N.2
Kingston, R.E.3
-
5
-
-
84861082442
-
Interaction of the mediator head module with RNA polymerase II
-
Cai G., Chaban Y.L., Imasaki T., Kovacs J.A., Calero G., Penczek P.A., Takagi Y., Asturias F.J. Interaction of the mediator head module with RNA polymerase II. Structure 2012, 20:899-910.
-
(2012)
Structure
, vol.20
, pp. 899-910
-
-
Cai, G.1
Chaban, Y.L.2
Imasaki, T.3
Kovacs, J.A.4
Calero, G.5
Penczek, P.A.6
Takagi, Y.7
Asturias, F.J.8
-
6
-
-
33750453345
-
RSC exploits histone acetylation to abrogate the nucleosomal block to RNA polymerase II elongation
-
Carey M., Li B., Workman J.L. RSC exploits histone acetylation to abrogate the nucleosomal block to RNA polymerase II elongation. Mol. Cell 2006, 24:481-487.
-
(2006)
Mol. Cell
, vol.24
, pp. 481-487
-
-
Carey, M.1
Li, B.2
Workman, J.L.3
-
7
-
-
48349095490
-
Mediator-dependent recruitment of TFIIH modules in preinitiation complex
-
Esnault C., Ghavi-Helm Y., Brun S., Soutourina J., Van Berkum N., Boschiero C., Holstege F., Werner M. Mediator-dependent recruitment of TFIIH modules in preinitiation complex. Mol. Cell 2008, 31:337-346.
-
(2008)
Mol. Cell
, vol.31
, pp. 337-346
-
-
Esnault, C.1
Ghavi-Helm, Y.2
Brun, S.3
Soutourina, J.4
Van Berkum, N.5
Boschiero, C.6
Holstege, F.7
Werner, M.8
-
8
-
-
58349085943
-
Promoter proximal pausing on genes in metazoans
-
Gilmour D.S. Promoter proximal pausing on genes in metazoans. Chromosoma 2009, 118:1-10.
-
(2009)
Chromosoma
, vol.118
, pp. 1-10
-
-
Gilmour, D.S.1
-
9
-
-
0028352861
-
Transcription factors IIE and IIH and ATP hydrolysis direct promoter clearance by RNA polymerase II
-
Goodrich J.A., Tjian R. Transcription factors IIE and IIH and ATP hydrolysis direct promoter clearance by RNA polymerase II. Cell 1994, 77:145-156.
-
(1994)
Cell
, vol.77
, pp. 145-156
-
-
Goodrich, J.A.1
Tjian, R.2
-
10
-
-
33646066806
-
Synergistic functions of SII and p300 in productive activator-dependent transcription of chromatin templates
-
Guermah M., Palhan V.B., Tackett A.J., Chait B.T., Roeder R.G. Synergistic functions of SII and p300 in productive activator-dependent transcription of chromatin templates. Cell 2006, 125:275-286.
-
(2006)
Cell
, vol.125
, pp. 275-286
-
-
Guermah, M.1
Palhan, V.B.2
Tackett, A.J.3
Chait, B.T.4
Roeder, R.G.5
-
11
-
-
36049014424
-
TFIIS elongation factor and Mediator act in conjunction during transcription initiation in vivo
-
Guglielmi B., Soutourina J., Esnault C., Werner M. TFIIS elongation factor and Mediator act in conjunction during transcription initiation in vivo. Proc. Natl. Acad. Sci. USA 2007, 104:16062-16067.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 16062-16067
-
-
Guglielmi, B.1
Soutourina, J.2
Esnault, C.3
Werner, M.4
-
12
-
-
0031463993
-
Three transitions in the RNA polymerase II transcription complex during initiation
-
Holstege F.C., Fiedler U., Timmers H.T. Three transitions in the RNA polymerase II transcription complex during initiation. EMBO J. 1997, 16:7468-7480.
-
(1997)
EMBO J.
, vol.16
, pp. 7468-7480
-
-
Holstege, F.C.1
Fiedler, U.2
Timmers, H.T.3
-
13
-
-
0043244876
-
Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage
-
Kettenberger H., Armache K.J., Cramer P. Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage. Cell 2003, 114:347-357.
-
(2003)
Cell
, vol.114
, pp. 347-357
-
-
Kettenberger, H.1
Armache, K.J.2
Cramer, P.3
-
14
-
-
36049035016
-
The transcription elongation factor TFIIS is a component of RNA polymerase II preinitiation complexes
-
Kim B., Nesvizhskii A.I., Rani P.G., Hahn S., Aebersold R., Ranish J.A. The transcription elongation factor TFIIS is a component of RNA polymerase II preinitiation complexes. Proc. Natl. Acad. Sci. USA 2007, 104:16068-16073.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 16068-16073
-
-
Kim, B.1
Nesvizhskii, A.I.2
Rani, P.G.3
Hahn, S.4
Aebersold, R.5
Ranish, J.A.6
-
15
-
-
76749090562
-
The human PAF1 complex acts in chromatin transcription elongation both independently and cooperatively with SII/TFIIS
-
Kim J., Guermah M., Roeder R.G. The human PAF1 complex acts in chromatin transcription elongation both independently and cooperatively with SII/TFIIS. Cell 2010, 140:491-503.
-
(2010)
Cell
, vol.140
, pp. 491-503
-
-
Kim, J.1
Guermah, M.2
Roeder, R.G.3
-
16
-
-
15944393126
-
Nature of the nucleosomal barrier to RNA polymerase II
-
Kireeva M.L., Hancock B., Cremona G.H., Walter W., Studitsky V.M., Kashlev M. Nature of the nucleosomal barrier to RNA polymerase II. Mol. Cell 2005, 18:97-108.
-
(2005)
Mol. Cell
, vol.18
, pp. 97-108
-
-
Kireeva, M.L.1
Hancock, B.2
Cremona, G.H.3
Walter, W.4
Studitsky, V.M.5
Kashlev, M.6
-
17
-
-
18844451820
-
Mediator and the mechanism of transcriptional activation
-
Kornberg R.D. Mediator and the mechanism of transcriptional activation. Trends Biochem. Sci. 2005, 30:235-239.
-
(2005)
Trends Biochem. Sci.
, vol.30
, pp. 235-239
-
-
Kornberg, R.D.1
-
18
-
-
0035924326
-
Selectivity of chromatin-remodelling cofactors for ligand-activated transcription
-
Lemon B., Inouye C., King D.S., Tjian R. Selectivity of chromatin-remodelling cofactors for ligand-activated transcription. Nature 2001, 414:924-928.
-
(2001)
Nature
, vol.414
, pp. 924-928
-
-
Lemon, B.1
Inouye, C.2
King, D.S.3
Tjian, R.4
-
19
-
-
22144482360
-
TFIIH XPB mutants suggest a unified bacterial-like mechanism for promoter opening but not escape
-
Lin Y.C., Choi W.S., Gralla J.D. TFIIH XPB mutants suggest a unified bacterial-like mechanism for promoter opening but not escape. Nat. Struct. Mol. Biol. 2005, 12:603-607.
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 603-607
-
-
Lin, Y.C.1
Choi, W.S.2
Gralla, J.D.3
-
20
-
-
79960966899
-
Initiation complex structure and promoter proofreading
-
Liu X., Bushnell D.A., Silva D.A., Huang X., Kornberg R.D. Initiation complex structure and promoter proofreading. Science 2011, 333:633-637.
-
(2011)
Science
, vol.333
, pp. 633-637
-
-
Liu, X.1
Bushnell, D.A.2
Silva, D.A.3
Huang, X.4
Kornberg, R.D.5
-
21
-
-
0032512794
-
New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning
-
Lowary P.T., Widom J. New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning. J. Mol. Biol. 1998, 276:19-42.
-
(1998)
J. Mol. Biol.
, vol.276
, pp. 19-42
-
-
Lowary, P.T.1
Widom, J.2
-
22
-
-
0023645766
-
Abortive initiation by RNA polymerase II in vitro at the adenovirus 2 major late promoter
-
Luse D.S., Jacob G.A. Abortive initiation by RNA polymerase II in vitro at the adenovirus 2 major late promoter. J. Biol. Chem. 1987, 262:14990-14997.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 14990-14997
-
-
Luse, D.S.1
Jacob, G.A.2
-
23
-
-
79953228899
-
Efficient and rapid nucleosome traversal by RNA polymerase II depends on a combination of transcript elongation factors
-
Luse D.S., Spangler L.C., Újvári A. Efficient and rapid nucleosome traversal by RNA polymerase II depends on a combination of transcript elongation factors. J. Biol. Chem. 2011, 286:6040-6048.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 6040-6048
-
-
Luse, D.S.1
Spangler, L.C.2
Újvári, A.3
-
24
-
-
0242474613
-
Isolation and functional characterization of the TRAP/mediator complex
-
Malik S., Roeder R.G. Isolation and functional characterization of the TRAP/mediator complex. Methods Enzymol. 2003, 364:257-284.
-
(2003)
Methods Enzymol.
, vol.364
, pp. 257-284
-
-
Malik, S.1
Roeder, R.G.2
-
25
-
-
77958111633
-
The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation
-
Malik S., Roeder R.G. The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation. Nat. Rev. Genet. 2010, 11:761-772.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 761-772
-
-
Malik, S.1
Roeder, R.G.2
-
26
-
-
34547525335
-
Identification of a regulator of transcription elongation as an accessory factor for the human Mediator coactivator
-
Malik S., Barrero M.J., Jones T. Identification of a regulator of transcription elongation as an accessory factor for the human Mediator coactivator. Proc. Natl. Acad. Sci. USA 2007, 104:6182-6187.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 6182-6187
-
-
Malik, S.1
Barrero, M.J.2
Jones, T.3
-
27
-
-
43049152845
-
Poised RNA polymerase II gives pause for thought
-
Margaritis T., Holstege F.C. Poised RNA polymerase II gives pause for thought. Cell 2008, 133:581-584.
-
(2008)
Cell
, vol.133
, pp. 581-584
-
-
Margaritis, T.1
Holstege, F.C.2
-
28
-
-
0023732884
-
Factors involved in specific transcription by mammalian RNA polymerase II: purification, genetic specificity, and TATA box-promoter interactions of TFIID
-
Nakajima N., Horikoshi M., Roeder R.G. Factors involved in specific transcription by mammalian RNA polymerase II: purification, genetic specificity, and TATA box-promoter interactions of TFIID. Mol. Cell. Biol. 1988, 8:4028-4040.
-
(1988)
Mol. Cell. Biol.
, vol.8
, pp. 4028-4040
-
-
Nakajima, N.1
Horikoshi, M.2
Roeder, R.G.3
-
29
-
-
74549132843
-
Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila
-
Nechaev S., Fargo D.C., dos Santos G., Liu L., Gao Y., Adelman K. Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila. Science 2010, 327:335-338.
-
(2010)
Science
, vol.327
, pp. 335-338
-
-
Nechaev, S.1
Fargo, D.C.2
dos Santos, G.3
Liu, L.4
Gao, Y.5
Adelman, K.6
-
30
-
-
0036132904
-
Strong natural pausing by RNA polymerase II within 10 bases of transcription start may result in repeated slippage and reextension of the nascent RNA
-
Pal M., Luse D.S. Strong natural pausing by RNA polymerase II within 10 bases of transcription start may result in repeated slippage and reextension of the nascent RNA. Mol. Cell. Biol. 2002, 22:30-40.
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 30-40
-
-
Pal, M.1
Luse, D.S.2
-
31
-
-
21244484548
-
The role of the transcription bubble and TFIIB in promoter clearance by RNA polymerase II
-
Pal M., Ponticelli A.S., Luse D.S. The role of the transcription bubble and TFIIB in promoter clearance by RNA polymerase II. Mol. Cell 2005, 19:101-110.
-
(2005)
Mol. Cell
, vol.19
, pp. 101-110
-
-
Pal, M.1
Ponticelli, A.S.2
Luse, D.S.3
-
32
-
-
84858165145
-
Genome-wide structure and organization of eukaryotic pre-initiation complexes
-
Rhee H.S., Pugh B.F. Genome-wide structure and organization of eukaryotic pre-initiation complexes. Nature 2012, 483:295-301.
-
(2012)
Nature
, vol.483
, pp. 295-301
-
-
Rhee, H.S.1
Pugh, B.F.2
-
33
-
-
0032450899
-
Role of general and gene-specific cofactors in the regulation of eukaryotic transcription
-
Roeder R.G. Role of general and gene-specific cofactors in the regulation of eukaryotic transcription. Cold Spring Harb. Symp. Quant. Biol. 1998, 63:201-218.
-
(1998)
Cold Spring Harb. Symp. Quant. Biol.
, vol.63
, pp. 201-218
-
-
Roeder, R.G.1
-
35
-
-
39749145198
-
Dynamic regulation of nucleosome positioning in the human genome
-
Schones D.E., Cui K., Cuddapah S., Roh T.Y., Barski A., Wang Z., Wei G., Zhao K. Dynamic regulation of nucleosome positioning in the human genome. Cell 2008, 132:887-898.
-
(2008)
Cell
, vol.132
, pp. 887-898
-
-
Schones, D.E.1
Cui, K.2
Cuddapah, S.3
Roh, T.Y.4
Barski, A.5
Wang, Z.6
Wei, G.7
Zhao, K.8
-
36
-
-
5444225805
-
Elongation by RNA polymerase II: the short and long of it
-
Sims R.J., Belotserkovskaya R., Reinberg D. Elongation by RNA polymerase II: the short and long of it. Genes Dev. 2004, 18:2437-2468.
-
(2004)
Genes Dev.
, vol.18
, pp. 2437-2468
-
-
Sims, R.J.1
Belotserkovskaya, R.2
Reinberg, D.3
-
37
-
-
79959939884
-
Human mediator subunit MED26 functions as a docking site for transcription elongation factors
-
Takahashi H., Parmely T.J., Sato S., Tomomori-Sato C., Banks C.A., Kong S.E., Szutorisz H., Swanson S.K., Martin-Brown S., Washburn M.P., et al. Human mediator subunit MED26 functions as a docking site for transcription elongation factors. Cell 2011, 146:92-104.
-
(2011)
Cell
, vol.146
, pp. 92-104
-
-
Takahashi, H.1
Parmely, T.J.2
Sato, S.3
Tomomori-Sato, C.4
Banks, C.A.5
Kong, S.E.6
Szutorisz, H.7
Swanson, S.K.8
Martin-Brown, S.9
Washburn, M.P.10
|