Global phylogeny of Shigella sonnei strains from limited single nucleotide polymorphisms (SNPs) and development of a rapid and cost-effective SNP-typing scheme for strain identification by high-resolution melting analysis

Journal of Clinical Microbiology

Volumn 51, Issue 1, 2013, Pages 303-305

  Sangal, Vartul ^a   Holt, Kathryn E ^b   Yuan, Jianfeng ^a   Brown, Derek J ^c   Filliol Toutain, Ingrid ^d   Weill, François Xavier ^d   Kim, Dong Wook ^e   Da Silveira, Wanderley Dias ^f   Pickard, Derek ^g   Thomson, Nicholas R ^g   Parkhill, Julian ^g   Yu, Jun ^a  

^a UNIVERSITY OF STRATHCLYDE   (United Kingdom)

^b UNIVERSITY OF MELBOURNE   (Australia)

^c STOBHILL HOSPITAL   (United Kingdom)

^d INSTITUT PASTEUR   (France)

^e Hanyang University   (South Korea)

^f UNIVERSITY OF CAMPINAS   (Brazil)

^g WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

QUINOLINE DERIVED ANTIINFECTIVE AGENT;

ACCURACY; ALLELE; ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; COST EFFECTIVENESS ANALYSIS; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENE SEQUENCE; GENETIC VARIABILITY; HIGH RESOLUTION MELTING ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROCESS DEVELOPMENT; SHIGELLA SONNEI; SHIGELLOSIS; SINGLE NUCLEOTIDE POLYMORPHISM; VARIABLE NUMBER OF TANDEM REPEAT;

BACTERIAL TYPING TECHNIQUES; DYSENTERY, BACILLARY; HUMANS; MOLECULAR EPIDEMIOLOGY; MOLECULAR TYPING; PANDEMICS; PHYLOGENY; POLYMORPHISM, SINGLE NUCLEOTIDE; SHIGELLA SONNEI; TRANSITION TEMPERATURE; WORLD HEALTH;

SHIGELLA SONNEI;

EID: 84871699295     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.02238-12     Document Type: Article

References (15)

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