Naringenin degradation by the endophytic diazotroph Herbaspirillum seropedicae SmR1

Microbiology (United Kingdom)

Volumn 159, Issue 1, 2013, Pages 167-175

  Marin, A M ^a   Souza, E M ^a   Pedrosa, F O ^a   Souza, L M ^a   Sassaki, G L ^a   Baura, V A ^a   Yates, M G ^a   Wassem, R ^a   Monteiro, R A ^a  

^a FEDERAL UNIVERSITY OF PARANÁ   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

CHRYSIN; NARINGENIN;

ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; CATABOLISM; DEGRADATION; FDEA GENE; FDER GENE; GENE EXPRESSION REGULATION; GENE MUTATION; HERBASPIRILLUM; HERBASPIRILLUM SEROPEDICAE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPERON; PRIORITY JOURNAL; SMR1 GENE; TRANSCRIPTION REGULATION;

BACTERIAL PROTEINS; BIOTRANSFORMATION; FLAVANONES; FLAVONOIDS; GENE EXPRESSION REGULATION, BACTERIAL; GENE KNOCKOUT TECHNIQUES; HERBASPIRILLUM; OPERON;

HERBASPIRILLUM SEROPEDICAE;

EID: 84871685094     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.061135-0     Document Type: Article

References (40)

1. Andersen, O. M. & Markham, K. R. (2006). Flavonoids: Chemistry, Biochemistry and Applications. Edited by O. M. Andersen & K. R. Markham. Boca Raton, FL: CRC Press.
2. Arunachalam, M., Mohan, N., Sugadev, R., Chellappan, P. & Mahadevan, A. (2003). Degradation of (+)-catechin by Acinetobacter calcoaceticus MTC 127. Biochim Biophys Acta 1621, 261--265.
3. Balachandar, D., Sandhiya, G. S., Sugitha, T. C. K. & Kumar, K. (2006). Flavonoids and growth hormones influence endophytic colonization and in plant nitrogen fixation by a diazotrophic Serratia sp. in rice. World J Microbiol Biotechnol 22, 707-712.
4. Baldani, J. I., Baldani, V. L. D., Seldin, L. & Döbereiner, J. (1986). Characterization of Herbaspirillum seropedicae gen. nov., sp. nov., a root-associated nitrogen-fixing bacterium. Int J Syst Bacteriol 36, 86-93.
5. Barz, W. (1970). Isolation of rhizosphere bacterium capable of degrading flavonoids. Phytochem 9, 1745-1749.
6. Bowater, L., Fairhurst, S. A., Just, V. J. & Bornemann, S. (2004). Bacillus subtilis YxaG is a novel Fe-containing quercetin 2,3-dioxygenase. FEBS Lett 557, 45-48.
7. Bradford, M. M. (1976). A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72, 248-254.
8. Braune, A., Gütschow, M., Engst, W. & Blaut, M. (2001). Degradation of quercetin and luteolin by Eubacterium ramulus. Appl Environ Microbiol 67, 5558-5567.
9. Brencic, A. & Winans, S. C. (2005). Detection of and response to signals involved in host-microbe interactions by plant-associated bacteria. Microbiol Mol Biol Rev 69, 155-194.
10. Coco, W. M., Rothmel, R. K., Henikoff, S. & Chakrabarty, A. M. (1993). Nucleotide sequence and initial functional characterization of the clcR gene encoding a LysR family activator of the clcABD chlorocatechol operon in Pseudomonas putida. J Bacteriol 175, 417-427.
11. Cook, N. C. & Samman, S. (1996). Flavonoids-chemistry, metabolism, cardioprotective effects and dietary sources. J Nutr Biochem 7, 66-76.
12. Das, S. & Rosazza, J. P. N. (2006). Microbial and enzymatic transformations of flavonoids. J Nat Prod 69, 499-508.
13. Dénarié, J., Debellé, F. & Rosenberg, C. (1992). Signaling and host range variation in nodulation. Annu Rev Microbiol 46, 497-531.
14. Durfee, T., Nelson, R., Baldwin, S., Plunkett, G., III, Burland, V., Mau, B., Petrosino, J. F., Qin, X., Muzny, D. M. & other authors (2008). The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J Bacteriol 190, 2597-2606.
15. Gough, C., Galera, C., Vasse, J., Webster, G., Cocking, E. C. & Dénarié, J. (1997). Specific flavonoids promote intercellular root colonization of Arabidopsis thaliana by Azorhizobium caulinodans ORS571. Mol Plant Microbe Interact 10, 560-570.
16. Hirooka, K., Kunikane, S., Matsuoka, H., Yoshida, K. I., Kumamoto, K., Tojo, S. & Fujita, Y. (2007). Dual regulation of the Bacillus subtilis regulon comprising the lmrAB and yxaGH operons and yxaF gene by two transcriptional repressors, LmrA and YxaF, in response to flavonoids. J Bacteriol 189, 5170-5182.
17. Hirooka, K., Danjo, Y., Hanano, Y., Kunikane, S., Matsuoka, H., Tojo, S. & Fujita, Y. (2009). Regulation of the Bacillus subtilis divergent yetL and yetM genes by a transcriptional repressor, YetL, in response to flavonoids. J Bacteriol 191, 3685-3697.
18. Hopper, W. & Mahadevan, A. (1997). Degradation of cathecin by Bradyrhizobium japonicum. Biodeg 8, 159-165.
19. Jeffrey, A. M., Jerina, D. M., Self, R. & Evans, W. C. (1972). The bacterial degradation of flavonoids. Oxidative fission of the A-ring of dihydrogossypetin by a Pseudomonas sp. Biochem J 130, 383-390.
20. Jiménez, J. I., Miñambres, B., García, J. L. & Díaz, E. (2002). Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440. Environ Microbiol 4, 824-841.
21. Klassen, G., Pedrosa, F. O., Souza, E. M., Funayama, S. & Rigo, L. U. (1997). Effect of nitrogen compounds on nitrogenase activity in Herbaspirillum seropedicae SmR1. Can J Microbiol 43, 887-891.
22. Maddocks, S. E. & Oyston, P. C. F. (2008). Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins. Microbiology 154, 3609-3623.
23. Miller, J. H. (1972). Experiments in Molecular Genetics. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
24. Mulligan, J. T. & Long, S. R. (1989). A family of activator genes regulates expression of Rhizobium meliloti nodulation genes. Genetics 122, 7-18.
25. Pedrosa, F. O., Monteiro, R. A., Wassem, R., Cruz, L. M., Ayub, R. A., Colauto, N. B., Fernandez, M. A., Fungaro, M. H. P., Grisard, E. C. & other authors (2011). Genome of Herbaspirillum seropedicae strain SmR1, a specialized diazotrophic endophyte of tropical grasses. PLoS Genet 7, e1002064.
26. Pérez-Pantoja, D., De la Iglesia, R., Pieper, D. H. & González, B. (2008). Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacterium Cupriavidus necator JMP134. FEMS Microbiol Rev 32, 736-794.
27. Pillai, B. V. S. & Swarup, S. (2002). Elucidation of the flavonoid catabolism pathway in Pseudomonas putida PML2 by comparative metabolic profiling. Appl Environ Microbiol 68, 143-151.
28. Rao, J. R. & Cooper, J. E. (1994). Rhizobia catabolize nod geneinducing flavonoids via C-ring fission mechanisms. J Bacteriol 176, 5409-5413.
29. Rao, J. R. & Cooper, J. E. (1995). Soybean nodulating rhizobia modify nod gene inducers daidzein and genistein to yield aromatic products that can influence gene-inducing activity. Mol Plant Microbe Interact 8, 855-862.
30. Rao, J. R., Sharma, N. D., Hamilton, J. T. G., Boyd, D. R. & Cooper, J. E. (1991). Biotransformation of the pentahydroxy flavone quercetin by Rhizobium loti and Bradyrhizobium strains (Lotus). Appl Environ Microbiol 57, 1563-1565.
31. Reddy, P. M., Rendón-Anaya, M., del Río, M. D. S. & Khandual, S. (2007). Flavonoids as signalling molecules and regulators of root nodule development. Dynamic Soil, Dynamic Plant 1, 83-94.
32. Romero-Arroyo, C. E., Schell, M. A., Gaines, G. L., III & Neidle, E. L. (1995). catM encodes a LysR-type transcriptional activator regulating catechol degradation in Acinetobacter calcoaceticus. J Bacteriol 177, 5891-5898.
33. Rothmel, R. K., Aldrich, T. L., Houghton, J. E., Coco, W. M., Ornston, L. N. & Chakrabarty, A. M. (1990). Nucleotide sequencing and characterization of Pseudomonas putida catR: a positive regulator of the catBC operon is a member of the LysR family. J Bacteriol 172, 922-931.
34. Schneider, H. & Blaut, M. (2000). Anaerobic degradation of flavonoids by Eubacterium ramulus. Arch Microbiol 173, 71-75.
35. Schoefer, L., Mohan, R., Schwiertz, A., Braune, A. & Blaut, M. (2003). Anaerobic degradation of flavonoids by Clostridium orbiscindens. Appl Environ Microbiol 69, 5849-5854.
36. Spaink, H. P., Okker, R. J. H., Wijffelman, C. A., Pees, E. & Lugtenberg, B. J. J. (1987). Promoters in the nodulation region of the Rhizobium leguminosarum Sym plasmid pRL1JI. Plant Mol Biol 9, 27-39.
37. Suen, W. C. & Spain, J. C. (1993). Cloning and characterization of Pseudomonas sp. strain DNT genes for 2,4-dinitrotoluene degradation. J Bacteriol 175, 1831-1837.
38. Williams, C. A. & Grayer, R. J. (2004). Anthocyanins and other flavonoids. Nat Prod Rep 21, 539-573.
39. Winter, J., Moore, L. H., Dowell, V. R., Jr & Bokkenheuser, V. D. (1989). C-ring cleavage of flavonoids by human intestinal bacteria. Appl Environ Microbiol 55, 1203-1208.
40. You, I. S., Ghosal, D. & Gunsalus, I. C. (1988). Nucleotide sequence of plasmid NAH7 gene nahR and DNA binding of the nahR product. J Bacteriol 170, 5409-5415.