메뉴 건너뛰기




Volumn 101, Issue 1, 2013, Pages 57-63

Identification of novel splice variants in horn cancer by RNA-Seq analysis in Zebu cattle

Author keywords

Alternative splicing; BLAT; Frame shift; GT AG rule; Horn cancer; RT PCR; RT qPCR; Transcriptome sequencing

Indexed keywords

TRANSCRIPTOME;

EID: 84871675546     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2012.10.001     Document Type: Article
Times cited : (7)

References (32)
  • 1
    • 84655168267 scopus 로고    scopus 로고
    • Important aspects of horn cancer
    • Singh S.P., Batra M., Singh G.K. Important aspects of horn cancer. Cow 2005, 32-34.
    • (2005) Cow , pp. 32-34
    • Singh, S.P.1    Batra, M.2    Singh, G.K.3
  • 3
    • 84655161936 scopus 로고    scopus 로고
    • A preliminary sketch of horn cancer transcriptome in Indian zebu cattle
    • Tripathi A.K., et al. A preliminary sketch of horn cancer transcriptome in Indian zebu cattle. Gene 2012, 493:124-131.
    • (2012) Gene , vol.493 , pp. 124-131
    • Tripathi, A.K.1
  • 4
    • 7444220147 scopus 로고    scopus 로고
    • Aberrant and alternative splicing in cancer
    • Venables J.P. Aberrant and alternative splicing in cancer. Cancer Res. 2004, 64:7647-7654.
    • (2004) Cancer Res. , vol.64 , pp. 7647-7654
    • Venables, J.P.1
  • 5
    • 78049416081 scopus 로고    scopus 로고
    • Alternative pre-mRNA splicing regulation in cancer: pathways and programs unhinged
    • David C.J., Manley J.L. Alternative pre-mRNA splicing regulation in cancer: pathways and programs unhinged. Genes Dev. 2010, 24:2343-2364.
    • (2010) Genes Dev. , vol.24 , pp. 2343-2364
    • David, C.J.1    Manley, J.L.2
  • 8
    • 0037134764 scopus 로고    scopus 로고
    • A hMLH1 genomic mutation and associated novel mRNA defects in a hereditary non-polyposis colorectal cancer family
    • Tanko Q., Franklin B., Lynch H., Knezetic J. A hMLH1 genomic mutation and associated novel mRNA defects in a hereditary non-polyposis colorectal cancer family. Mutat. Res. 2002, 503:37-42.
    • (2002) Mutat. Res. , vol.503 , pp. 37-42
    • Tanko, Q.1    Franklin, B.2    Lynch, H.3    Knezetic, J.4
  • 9
    • 38849179519 scopus 로고    scopus 로고
    • Multiple alternative splicing markers for ovarian cancer
    • Klinck R., et al. Multiple alternative splicing markers for ovarian cancer. Cancer Res. 2008, 68:657-663.
    • (2008) Cancer Res. , vol.68 , pp. 657-663
    • Klinck, R.1
  • 11
    • 15544379277 scopus 로고    scopus 로고
    • Are splicing mutations the most frequent cause of hereditary disease?
    • Lopez-Bigas N., Audit B., Ouzounis C., Parra G., Guigo R. Are splicing mutations the most frequent cause of hereditary disease?. FEBS Lett. 2005, 579:1900-1903.
    • (2005) FEBS Lett. , vol.579 , pp. 1900-1903
    • Lopez-Bigas, N.1    Audit, B.2    Ouzounis, C.3    Parra, G.4    Guigo, R.5
  • 12
    • 33745394130 scopus 로고    scopus 로고
    • Alternative splicing and RNA selection pressure-evolutionary consequences for eukaryotic genomes
    • Xing Y., Lee C. Alternative splicing and RNA selection pressure-evolutionary consequences for eukaryotic genomes. Nat. Rev. Genet. 2006, 7:499-509.
    • (2006) Nat. Rev. Genet. , vol.7 , pp. 499-509
    • Xing, Y.1    Lee, C.2
  • 13
    • 0013394889 scopus 로고    scopus 로고
    • Mechanisms of alternative pre-messenger RNA splicing
    • Black D.L. Mechanisms of alternative pre-messenger RNA splicing. Annu. Rev. Biochem. 2003, 72:291-336.
    • (2003) Annu. Rev. Biochem. , vol.72 , pp. 291-336
    • Black, D.L.1
  • 14
    • 0036534129 scopus 로고    scopus 로고
    • Alternative splicing: multiple control mechanisms and involvement in human disease
    • Caceres J.F., Kornblihtt A.R. Alternative splicing: multiple control mechanisms and involvement in human disease. Trends Genet. 2002, 18:186-193.
    • (2002) Trends Genet. , vol.18 , pp. 186-193
    • Caceres, J.F.1    Kornblihtt, A.R.2
  • 15
    • 47649124124 scopus 로고    scopus 로고
    • A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
    • Sultan M., et al. A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science 2008, 321:956-960.
    • (2008) Science , vol.321 , pp. 956-960
    • Sultan, M.1
  • 16
    • 0033539067 scopus 로고    scopus 로고
    • Acinus is a caspase-3-activated protein required for apoptotic chromatin condensation
    • Sahara S., Aoto M., Eguchi Y., Imamoto N., Yoneda Y., Tsujimoto Y. Acinus is a caspase-3-activated protein required for apoptotic chromatin condensation. Nature 1999, 401:168-173.
    • (1999) Nature , vol.401 , pp. 168-173
    • Sahara, S.1    Aoto, M.2    Eguchi, Y.3    Imamoto, N.4    Yoneda, Y.5    Tsujimoto, Y.6
  • 17
    • 49649101933 scopus 로고    scopus 로고
    • Serine/arginine protein-specific kinase 2 promotes leukemia cell proliferation by phosphorylating acinus and regulating cyclin A1
    • Jang S.W., et al. Serine/arginine protein-specific kinase 2 promotes leukemia cell proliferation by phosphorylating acinus and regulating cyclin A1. Cancer Res. 2008, 68:4559-4570.
    • (2008) Cancer Res. , vol.68 , pp. 4559-4570
    • Jang, S.W.1
  • 18
    • 79952216168 scopus 로고    scopus 로고
    • Steroid receptor coactivator-1 upregulates integrin alpha expression to promote breast cancer cell adhesion and migration
    • Qin L., et al. Steroid receptor coactivator-1 upregulates integrin alpha expression to promote breast cancer cell adhesion and migration. Cancer Res. 2011, 71:1742-1751.
    • (2011) Cancer Res. , vol.71 , pp. 1742-1751
    • Qin, L.1
  • 19
    • 61449255494 scopus 로고    scopus 로고
    • BP1, a putative signature marker for inflammatory breast cancer and tumor aggressiveness
    • Man Y.G., Schwartz A., Levine P.H., Teal C., Berg P.E. BP1, a putative signature marker for inflammatory breast cancer and tumor aggressiveness. Cancer Biomark. 2009, 5:9-17.
    • (2009) Cancer Biomark. , vol.5 , pp. 9-17
    • Man, Y.G.1    Schwartz, A.2    Levine, P.H.3    Teal, C.4    Berg, P.E.5
  • 20
    • 44949257965 scopus 로고    scopus 로고
    • Prognostic significance of BP1 mRNA expression level in patients with non-small cell lung cancer
    • Yu M., Wan Y., Zou Q. Prognostic significance of BP1 mRNA expression level in patients with non-small cell lung cancer. Clin. Biochem. 2008, 41:824-830.
    • (2008) Clin. Biochem. , vol.41 , pp. 824-830
    • Yu, M.1    Wan, Y.2    Zou, Q.3
  • 21
    • 31444439195 scopus 로고    scopus 로고
    • Aberrant expression of N-acetylglucosaminyltransferase-IVa and IVb (GnT-IVa and b) in pancreatic cancer
    • Ide Y., et al. Aberrant expression of N-acetylglucosaminyltransferase-IVa and IVb (GnT-IVa and b) in pancreatic cancer. Biochem. Biophys. Res. Commun. 2006, 341:478-482.
    • (2006) Biochem. Biophys. Res. Commun. , vol.341 , pp. 478-482
    • Ide, Y.1
  • 22
    • 77951699559 scopus 로고    scopus 로고
    • High expression of lymphocyte-activation gene 3 (LAG3) in chronic lymphocytic leukemia cells is associated with unmutated immunoglobulin variable heavy chain region (IGHV) gene and reduced treatment-free survival
    • Kotaskova J., et al. High expression of lymphocyte-activation gene 3 (LAG3) in chronic lymphocytic leukemia cells is associated with unmutated immunoglobulin variable heavy chain region (IGHV) gene and reduced treatment-free survival. J. Mol. Diagn. 2010, 12:328-334.
    • (2010) J. Mol. Diagn. , vol.12 , pp. 328-334
    • Kotaskova, J.1
  • 23
    • 0036515026 scopus 로고    scopus 로고
    • RFX-B, a MHC class II transcription factor, suppressed in human colorectal adenocarcinomas
    • Dimberg J., Hugander A., Hall-Karlsson B.M., Sirsjo A. RFX-B, a MHC class II transcription factor, suppressed in human colorectal adenocarcinomas. Int. J. Mol. Med. 2002, 9:213-216.
    • (2002) Int. J. Mol. Med. , vol.9 , pp. 213-216
    • Dimberg, J.1    Hugander, A.2    Hall-Karlsson, B.M.3    Sirsjo, A.4
  • 24
    • 33745076752 scopus 로고    scopus 로고
    • Predicting 5-fluorouracil chemosensitivity of liver metastases from colorectal cancer using primary tumor specimens: three-gene expression model predicts clinical response
    • Matsuyama R., et al. Predicting 5-fluorouracil chemosensitivity of liver metastases from colorectal cancer using primary tumor specimens: three-gene expression model predicts clinical response. Int. J. Cancer 2006, 119:406-413.
    • (2006) Int. J. Cancer , vol.119 , pp. 406-413
    • Matsuyama, R.1
  • 25
    • 33846664308 scopus 로고    scopus 로고
    • Gene expression profiles of primary colorectal carcinomas, liver metastases, and carcinomatoses
    • Kleivi K., et al. Gene expression profiles of primary colorectal carcinomas, liver metastases, and carcinomatoses. Mol. Cancer 2007, 6:2.
    • (2007) Mol. Cancer , vol.6 , pp. 2
    • Kleivi, K.1
  • 26
    • 31044453144 scopus 로고    scopus 로고
    • The evi5 oncogene regulates cyclin accumulation by stabilizing the anaphase-promoting complex inhibitor emi1
    • Eldridge A.G., Loktev A.V., Hansen D.V., Verschuren E.W., Reimann J.D., Jackson P.K. The evi5 oncogene regulates cyclin accumulation by stabilizing the anaphase-promoting complex inhibitor emi1. Cell 2006, 124:367-380.
    • (2006) Cell , vol.124 , pp. 367-380
    • Eldridge, A.G.1    Loktev, A.V.2    Hansen, D.V.3    Verschuren, E.W.4    Reimann, J.D.5    Jackson, P.K.6
  • 27
    • 77957881251 scopus 로고    scopus 로고
    • The protein network surrounding the human telomere repeat binding factors TRF1, TRF2, and POT1
    • Giannone R.J., McDonald H.W., Hurst G.B., Shen R.F., Wang Y., Liu Y. The protein network surrounding the human telomere repeat binding factors TRF1, TRF2, and POT1. PLoS One 2010, 5:e12407.
    • (2010) PLoS One , vol.5
    • Giannone, R.J.1    McDonald, H.W.2    Hurst, G.B.3    Shen, R.F.4    Wang, Y.5    Liu, Y.6
  • 28
    • 13944263628 scopus 로고    scopus 로고
    • Human telomeric protein TRF2 associates with genomic double-strand breaks as an early response to DNA damage
    • Bradshaw P.S., Stavropoulos D.J., Meyn M.S. Human telomeric protein TRF2 associates with genomic double-strand breaks as an early response to DNA damage. Nat. Genet. 2005, 37:193-197.
    • (2005) Nat. Genet. , vol.37 , pp. 193-197
    • Bradshaw, P.S.1    Stavropoulos, D.J.2    Meyn, M.S.3
  • 29
    • 33745728166 scopus 로고    scopus 로고
    • Silencing of Peroxiredoxin 2 and aberrant methylation of 33 CpG islands in putative promoter regions in human malignant melanomas
    • Furuta J., Nobeyama Y., Umebayashi Y., Otsuka F., Kikuchi K., Ushijima T. Silencing of Peroxiredoxin 2 and aberrant methylation of 33 CpG islands in putative promoter regions in human malignant melanomas. Cancer Res. 2006, 66:6080-6086.
    • (2006) Cancer Res. , vol.66 , pp. 6080-6086
    • Furuta, J.1    Nobeyama, Y.2    Umebayashi, Y.3    Otsuka, F.4    Kikuchi, K.5    Ushijima, T.6
  • 30
    • 77953395286 scopus 로고    scopus 로고
    • LAG-3 expression defines a subset of CD4(+)CD25(high)Foxp3(+) regulatory T cells that are expanded at tumor sites
    • Camisaschi C., et al. LAG-3 expression defines a subset of CD4(+)CD25(high)Foxp3(+) regulatory T cells that are expanded at tumor sites. J. Immunol. 2010, 184:6545-6551.
    • (2010) J. Immunol. , vol.184 , pp. 6545-6551
    • Camisaschi, C.1
  • 31
    • 58149175829 scopus 로고    scopus 로고
    • BP1, a homeoprotein, is significantly expressed in prostate adenocarcinoma and is concordant with prostatic intraepithelial neoplasia
    • Schwartz A.M., Man Y.G., Rezaei M.K., Simmens S.J., Berg P.E. BP1, a homeoprotein, is significantly expressed in prostate adenocarcinoma and is concordant with prostatic intraepithelial neoplasia. Mod. Pathol. 2009, 22:1-6.
    • (2009) Mod. Pathol. , vol.22 , pp. 1-6
    • Schwartz, A.M.1    Man, Y.G.2    Rezaei, M.K.3    Simmens, S.J.4    Berg, P.E.5
  • 32
    • 78651320424 scopus 로고    scopus 로고
    • The UCSC Genome Browser database: update 2011
    • Fujita P.A., et al. The UCSC Genome Browser database: update 2011. Nucleic Acids Res. 2011, 39:D876-D882.
    • (2011) Nucleic Acids Res. , vol.39
    • Fujita, P.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.