Inclusion of cow records in genomic evaluations and impact on bias due to preferential treatment

Genetics Selection Evolution

Volumn 44, Issue 1, 2012, Pages

  Dassonneville, Romain ^a,b   Baur, Aurelia ^c   Fritz, Sébastien ^c   Boichard, Didier ^a   Ducrocq, Vincent ^a  

^a UMR1313 GÉNÉTIQUE ANIMALE ET BIOLOGIE INTÉGRATIVE   (France)

^b Institut de l'Elevage   (France)

^c UNCEIA   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ASSESSMENT METHOD; CATTLE; CELL ORGANELLE; DAIRY FARMING; GENOMICS; GENOTYPE; MILK PRODUCTION; POPULATION STRUCTURE; REPRODUCTIVE BEHAVIOR;

FRANCE;

ANIMALIA; BOS;

ANALYSIS OF VARIANCE; ANIMAL; ARTICLE; BREEDING; CATTLE; DAIRYING; EPIDEMIOLOGY; EVALUATION; FEMALE; GENETICS; GENOME; LACTATION; MALE; PEDIGREE; PHYSIOLOGY; POPULATION; QUANTITATIVE TRAIT; STATISTICS;

ANALYSIS OF VARIANCE; ANIMALS; BREEDING; CATTLE; DAIRYING; EVALUATION STUDIES AS TOPIC; FEMALE; GENOME; LACTATION; MALE; PEDIGREE; POPULATION; QUANTITATIVE TRAIT, HERITABLE; SELECTION BIAS;

MLCS; MLOWN;

EID: 84871537869     PISSN: 0999193X     EISSN: 12979686     Source Type: Journal    
DOI: 10.1186/1297-9686-44-40     Document Type: Article

References (14)

1. Potential biases in predicted transmitting abilities of females from preferential treatment. Kuhn MT, Boettcher PJ, Freeman AE, J Dairy Sci 1994 77 2428 2437 10.3168/jds.S0022-0302(94)77185-X
2. Contemporary groups for genetic evaluations. Van Vleck LD, J Dairy Sci 1987 70 2456 2464 10.3168/jds.S0022-0302(87)80309-0 3693648
3. Mapping genes for complex traits in domestic animals and their use in breeding programmes. Goddard ME, Hayes BJ, Nat Rev Genet 2009 10 381 391 10.1038/nrg2575 19448663
4. Technical note: adjustment of traditional cow evaluations to improve accuracy of genomic predictions. Wiggans GR, Cooper TA, VanRaden PM, Cole JB, J Dairy Sci 2011 94 6188 6193 10.3168/jds.2011-4481 22118107
5. A common reference population from four European Holstein populations increases reliability of genomic predictions. Lund MS, de Ross AWP, de Vries AG, Druet T, Ducrocq V, Fritz S, Guillaume F, Guldbrandtsen B, Liu Z, Reents R, Schrooten C, Seefried F, Su G, Genet Sel Evol 2011 43 43 10.1186/1297-9686-43-43 22152008
6. Derivation, calculation and use of national animal model information. VanRaden PM, Wiggans GR, J Dairy Sci 1991 74 2737 2746 10.3168/jds.S0022- 0302(91)78453-1 1918547
7. Accounting for variance heterogeneity in French dairy cattle genetic evaluation. Robert-Granié C, Bonaîti B, Boichard D, Barbat A, Livest Prod Sci 1999 60 343 357 10.1016/S0301-6226(99)00105-0
8. Marker assisted selection using best linear unbiased prediction. Fernando RL, Grossman M, Genet Sel Evol 1989 21 467 477 10.1186/1297-9686-21-4-467
9. Genomic selection in French dairy cattle. Boichard D, Guillaume F, Baur A, Croiseau P, Rossignol MN, Boscher MY, Druet T, Genestout L, Colleau JJ, Journaux L, Ducrocq V, Fritz S, Anim Prod Sci 2012 52 115 120 10.1071/AN11119
10. Fine mapping of quantitative trait loci affecting female fertility in dairy cattle on BTA03 using a dense single-nucleotide polymorphism map. Druet T, Fritz S, Boussaha M, Ben-Jemaa S, Guillaume F, Derbala D, Zelenika D, Lechner D, Charon C, Boichard D, Gut IG, Eggen A, Gautier M, Genetics 2008 178 2227 2235 10.1534/genetics.107.085035 18430945
11. Fine tuning genomic evaluations in dairy cattle through SNP pre-selection with the elastic-Net algorithm. Croiseau P, Legarra A, Guillaume F, Fritz S, Baur A, Colombani C, Robert-Granié C, Boichard D, Ducrocq V, Genet Res 2011 93 409 417 10.1017/S0016672311000358
12. Reliability of genomic predictions for north American Holstein bulls. VanRaden PM, Van Tassell CP, Wiggans GR, Sonstegard TS, Schnabel RD, Taylor JF, Schenkel FS, J Dairy Sci 2009 92 16 24 10.3168/jds.2008-1514 19109259
13. Design of a bovine low-density SNP array optimized for imputation. Boichard D, Chung H, Dassonneville R, David X, Eggen A, Fritz S, Gietzen KJ, Hayes BJ, Lawley CT, Sonstegard TS, Van Tassell CP, VanRaden PM, Viaud-Martinez KA, Wiggans GR, PLoS One 2012 7 34130 10.1371/journal.pone.0034130 22470530
14. Computing procedures for genetic evaluation including phenotypic, full pedigree, and genomic information. Misztal I, Legarra A, Aguilar I, J Dairy Sci 2009 92 4648 4655 10.3168/jds.2009-2064 19700728