Environmental factors at dissimilar spatial scales influence plant and microbial communities in restored wetlands

Wetlands

Volumn 32, Issue 6, 2012, Pages 1125-1134

  Peralta, Ariane L ^a,c   Matthews, Jeffrey W ^a,b   Flanagan, Diana N ^a   Kent, Angela D ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b UNIVERSITY OF ILLINOIS   (United States)

^c MICHIGAN STATE UNIVERSITY   (United States)

Author keywords

Community assembly; Local vs. landscape; Permutational (nonparametric) multivariate analysis of Variance

Indexed keywords

COMMUNITY COMPOSITION; ECOSYSTEM SERVICE; ENVIRONMENTAL FACTOR; LAND USE; MICROBIAL COMMUNITY; PLANT COMMUNITY; RESTORATION ECOLOGY; SPATIAL ANALYSIS; SURVEYING; WETLAND;

ILLINOIS; UNITED STATES;

BACTERIA (MICROORGANISMS);

EID: 84871518730     PISSN: 02775212     EISSN: 19436246     Source Type: Journal    
DOI: 10.1007/s13157-012-0343-3     Document Type: Article

References (62)

1. Bedford BL, Walbridge MR, Aldous A (1999) Patterns in nutrient availability and plant diversity of temperate North American wetlands. Ecology 80:2151-2169
2. Bissels S, Holzel N, Donath TW, Otte A (2004) Evaluation of restoration success in alluvial grasslands under contrasting flooding regimes. Biological Conservation 118:641-650
3. Bissett A, Richardson AE, Baker G, Wakelin S, Thrall PH (2010) Life history determines biogeographical patterns of soil bacterial communities over multiple spatial scales. Molecular Ecology 19:4315-4327
4. Bontti EE, Burke IC, Lauenroth WK (2011) Nitrogen partitioning between microbes and plants in the shortgrass steppe. Plant and Soil 342:445-457
5. Bray JR, Curtis JT (1957) An ordination of the upland communities of Southern Wisconsin. Ecological Monographs 27:325-349
6. Bru D, Ramette A, Saby NPA, Dequiedt S, Ranjard L, Jolivet C, Arrouays D, Philippot L (2011) Determinants of the distribution of nitrogen-cycling microbial communities at the landscape scale. ISME Journal 5:532-542
7. Castenson KL, Rabenhorst MC (2006) Indicator of reduction in soil (IRIS): Evaluation of a new approach for assessing reduced conditions in soil. Soil Science Society of America Journal 70:1222-1226
8. DeAngelis KM, Silver WL, Thompson AW, Firestone MK (2010) Microbial communities acclimate to recurring changes in soil redox potential status. Environmental Microbiology 12:3137-3149
9. Dechesne A, Pallud C, Grundmann GL (2007) Spatial distribution of bacteria at the microscale in soil. In: Franklin RB, Mills AL (eds) The spatial distribution of microbes in the environment springer. Dordrecht, The Netherlands, pp 87-107
10. Drenovsky RE, Steenwerth KL, Jackson LE, Scow KM (2010) Land use and climatic factors structure regional patterns in soil microbial communities. Global Ecology and Biogeography 19:27-39
11. Enwall K, Throback IN, Stenberg M, Soderstrom M, Hallin S (2010) Soil resources Influence spatial patterns of denitrifying communities at scales compatible with land management. Applied and Environmental Microbiology 76:2243-2250
12. Fenchel T, Finlay BJ (2004) The ubiquity of small species: patterns of local and global diversity. Bioscience 54:777-784
13. Fierer N, Jackson RB (2006) The diversity and biogeography of soil bacterial communities. Proc Natl Acad Sci USA 103:626-631
14. Foster D, Swanson F, Aber J, Burke I, Brokaw B, Tilman D, Knapp A (2003) The importance of land-use legacies to ecology and conservation. Bioscience 53:77-88
15. Galatowitsch SM, vanderValk AG (1996) The vegetation of restored and natural prairie wetlands. Ecological Applications 6:102-112
16. Gemborys SR, Hodgkins EJ (1971) Forests of small stream bottoms in coastal plain of southwestern Alabama. Ecology 52:70-84
17. Green J, Bohannan BJM (2006) Spatial scaling of microbial biodiversity. Trends in Ecology & Evolution 21:501-507
18. Griffiths RI, Thomson BC, James P, Bell T, Bailey M, Whiteley AS (2011) The bacterial biogeography of British soils. Environmental Microbiology 13:1642-1654
19. Harpole WS, Suding KN (2011) A test of the niche dimension hypothesis in an arid annual grassland. Oecologia 166:197-205
20. Hartman WH, Richardson CJ, Vilgalys R, Bruland GL (2008) Environmental and anthropogenic controls over bacterial communities in wetland soils. Proceedings of the National Academy of Sciences of the United States of America 105:17842-17847
21. Hobbs RJ, Norton DA (2004) Ecological filters, thresholds, and gradients in resistance to ecosystem reassembly. In: Temperton VM, Hobbs RJ, Nuttle T, Halle S (eds) Assembly rules and restoration ecology: bridging the gap between theory and practice. Island Press, Washington D.C, pp 72-95
22. Illinois State Geological Survey (2003) Illinois county boundaries, 2nd edn. Illinois State Geological Survey, Champaign, Illinois. http://www.isgs. uiuc.edu/nsdihome/webdocs/st-basem.html. Accessed 25 April 2011
23. Jenkinson BJ, Franzmeier DP (2006) Development and evaluation of iron-coated tubes that indicate reduction in soils. Soil Science Society of America Journal 70:183-191
24. Jones CM, Hallin S (2010) Ecological and evolutionary factors underlying global and local assembly of denitrifier communities. ISME Journal 4:633-641
25. Keddy PA (1992) Assembly and response rules -Two goals for predictive community ecology. Journal of Vegetation Science 3:157-164
26. Keddy PA (2000) Wetland ecology: principles and conservation. Cambridge University Press, Cambridge
27. Kent AD, Yannarell AC, Rusak JA, Triplett EW, McMahon KD (2007) Synchrony in aquatic microbial community dynamics. ISME Journal 1:38-47
28. King R, Richardson CJ, Urban DL, Romanowicz EA (2004) Spatial dependency of vegetation-environment linkages in an anthropogenically influenced wetland system. Ecosystems 7:75-97
29. Lankau RA (2011) Resistance and recovery of soil microbial communities in the face of Alliaria petiolata invasions. New Phytologist 189:536-548
30. Legendre P, Legendre L (1998) Numerical ecology. Elsevier Science, Amsterdam
31. Liu WT, Marsh TL, Cheng H, Forney LJ (1997) Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Applied and Environmental Microbiology 63:4516-4522
32. Luman D, Tweddale T, Bahnsen B, Willis P (2004) Illinois Map 12, scale 1:500,000-Illinois land cover. Illinois State Geological Survey, Champaign, IL
33. Madigan MT, Martinko JM (2006) Brock biology of microorganisms, 11th edn. Pearson Prentice Hall, Upper Saddle River, New Jersey
34. Matthews JW (2008) Restoration progress and plant community development in compensatory mitigation wetlands. Dissertation, University of Illinois at Urbana-Champaign
35. Matthews JW, Peralta AL, Flanagan DN, Baldwin PM, Soni A, Kent AD, Endress AG (2009) Relative influence of landscape vs. local factors on plant community assembly in restored wetlands. Ecological Applications 19:2108-2123
36. McArdle BH, Anderson MJ (2001) Fitting multivariate models to community data: a comment on distance-based redundancy analysis. Ecology 82:290-297
37. Mentzer JL, Goodman RM, Balser TC (2006) Microbial response over time to hydrologic and fertilization treatments in a simulated wet prairie. Plant and Soil 284:85-100
38. Mitsch WJ, Gosselink JG (2007) Wetlands Fourth edition. John Wiley and Sons, Hoboken
39. National Atlas of the United States (2005) State boundaries of the United States. National Atlas of the United States, Reston, VA. http://nationalatlas. gov/atlasftp.html. Accessed 25 April 2011
40. National Atlas of the United States (2006) Streams and waterbodies of the United States. National Atlas of the United States, Reston, VA. http://nationalatlas.gov/atlasftp.html. Accessed 25 April 2011
41. Oksanen J, Blanchet FG, Kindt R, Legendre P, O'Hara RB, Simpson GL, Solymos P, Stevens MHH, Wagner H (2010) Community Ecology Package 'vegan'
42. Ozinga WA, Schaminee JHJ, Bekker RM, Bonn S, Poschlod P, Tackenberg O, Bakker J, van Groenendael JM (2005) Predictability of plant species composition from environmental conditions is constrained by dispersal limitation. Oikos 108:555-561
43. Pavoine S, Vela E, Gachet S, de Belair G, Bonsall MB (2011) Linking patterns in phylogeny, traits, abiotic variables and space: a novel approach to linking environmental filtering and plant community assembly. Journal of Ecology 99:165-175
44. Peralta AL, Matthews JW, Kent AD (2010) Microbial community structure and denitrification in a wetland mitigation bank. Applied and Environmental Microbiology 76:4207-4215
45. Pett-Ridge J, Firestone MK (2005) Redox fluctuation structures microbial communities in a wet tropical soil. Applied and Environmental Microbiology 71:6998-7007
46. Picek T, Simek M, Santruckova H (2000) Microbial responses to fluctuation of soil aeration status and redox conditions. Biology and Fertility of Soils 31:315-322
47. Poll C, Ingwersen J, Stemmer M, Gerzabek MH, Kandeler E (2006) Mechanisms of solute transport affect small-scale abundance and function of soil microorganisms in the detritusphere. European Journal of Soil Science 57:583-595
48. R Development Core Team (2011) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. Retrieved from http://R-project.org. Accessed 1 Mar 2011
49. Rees GN, Baldwin DS, Watson GO, Perryman S, Nielsen DL (2004) Ordination and significance testing of microbial community composition derived from terminal restriction fragment length polymorphisms: application of multivariate statistics. Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology 86:339-347
50. Rhine ED, Sims GK, Mulvaney RL, Pratt EJ (1998) Improving the Berthelot reaction for determining ammonium in soil extracts and water. Soil Science Society of America Journal 62:473-480
51. Rich JJ, Heichen RS, Bottomley PJ, Cromack K, Myrold DD (2003) Community composition and functioning of denitrifying bacteria from adjacent meadow and forest soils. Applied and Environmental Microbiology 69:5974-5982
52. Richardson DM, Holmes PM, Esler KJ, Galatowitsch SM, Stromberg JC, Kirkman SP, Pysek P, Hobbs RJ (2007) Riparian vegetation: degradation, alien plant invasions, and restoration prospects. Diversity and Distributions 13:126-139
53. Sambrook J, Russell D (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
54. Savage D, Barbetti MJ, MacLeod WJ, Salam MU, Renton M (2010) Timing of propagule release significantly alters the deposition area of resulting aerial dispersal. Diversity and Distributions 16:288-299
55. Schimel J, Balser TC, Wallenstein M (2007) Microbial stress-response physiology and its implications for ecosystem function. Ecology 88:1386-1394
56. Shea K, Chesson P (2002) Community ecology theory as a framework for biological invasions. Trends in Ecology & Evolution 17:170-176
57. Sims GK, Ellsworth TR, Mulvaney RL (1995) Microscale determination of inorganic nitrogen in water and soil extracts. Communications in Soil Science and Plant 26:303-316
58. Truu M, Juhanson J, Truu J (2009) Microbial biomass, activity and community composition in constructed wetlands. Science of the Total Environment 407:3958-3971
59. Weiher E, Keddy PA (1995) The assembly of experimental wetland plant communities. Oikos 73:323-355
60. Yannarell AC, Triplett EW (2005) Geographic and environmental sources of variation in lake bacterial community composition. Applied and Environmental Microbiology 71:227-239
61. Zobel M (1992) Plant species coexistence - the role of historical, evolutionary and ecological filter. Oikos 65:314-320
62. Zumft WG (1997) Cell biology and molecular basis of denitrification. Microbiology and Molecular Biology Reviews 61:533-616