Normalizing and integrating metabolomics data

Analytical Chemistry

Volumn 84, Issue 24, 2012, Pages 10768-10776

  De Livera, Alysha M ^a   Dias, Daniel A ^a   De Souza, David ^a   Rupasinghe, Thusitha ^a   Pyke, James ^a   Tull, Dedreia ^a   Roessner, Ute ^a   McConville, Malcolm ^a   Speed, Terence P ^b  

^a UNIVERSITY OF MELBOURNE   (Australia)

^b WALTER AND ELIZA HALL INSTITUTE OF MEDICAL RESEARCH   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL INFORMATION; BIOLOGICAL VARIATION; METABOLOMICS; METABOLOMICS DATA; NORMALIZATION METHODS; SYSTEMATIC INTEGRATION;

CHEMICAL ANALYSIS;

CHEMISTRY;

ARTICLE; FACTUAL DATABASE; METABOLOMICS; METHODOLOGY; STATISTICS; SYSTEM ANALYSIS;

DATABASES, FACTUAL; METABOLOMICS; SYSTEMS INTEGRATION;

EID: 84871308823     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac302748b     Document Type: Article

References (23)

1. Dettmer, K.; Hammock, B. D. Environ. Health Perspect. 2004, 112, A396
2. Roessner, U.; Bowne, J. BioTechniques 2009, 46, 363-365
3. Roessner, U.; Beckles, D. M. In Plant Metabolic Networks; Schwender, J., Ed.; Springer: New York: New York, 2009.
4. Roessner, U.; Nahid, A.; Chapman, B.; Hunter, A.; Bellgard, M. Comprehensive Biotechnology, 2 nd ed.; Elsevier: Amsterdam, 2011; Vol. 1; pp 447-460.
5. Steuer, R.; Morgenthal, K.; Weckwerth, W.; Selbig, J. Methods Mol. Biol. 2007, 358, 105-126
6. Craig, A.; Cloarec, O.; Holmes, E.; Nicholson, J. K.; Lindon, J. C. Anal. Chem. 2006, 78, 2262-2267
7. Temmerman, L.; De Livera, A. M.; Bowne, J.; Sheedy, R. J.; Callahan, D. L.; Nahid, A.; De Souza, D. P.; Schoofs, L.; Tull, D. L.; McConville, M. J.; Roessner, U.; Wentworth, J. M. Metabolomics: Diabetics. J. Diabetes Metab. 2013, (upcoming special issue).
8. Gagnon-Bartsch, J. A.; Speed, T. P. Biostatistics 2012, 13, 539-552
9. Crawford, L. R.; Morrison, J. D. Anal. Chem. 1968, 40, 1464-1469
10. Wang, W.; Zhou, H.; Lin, H.; Roy, S.; Shaler, T. A.; Hill, L. R.; Norton, S.; Kumar, P.; Anderle, M.; Becker, C. H. Anal. Chem. 2003, 75, 4818-4826
11. Gullberg, J.; Jonsson, P.; Nordström, A.; Sjöström, M.; Moritz, T. Anal. Biochem. 2004, 331, 283-295
12. Bijlsma, S.; Bobeldijk, I.; Verheij, E. R.; Ramaker, R.; Kochhar, S.; Macdonald, I. A.; van Ommen, B.; Smilde, A. K. Anal. Chem. 2006, 78, 567-574
13. Sysi-Aho, M.; Katajamaa, M.; Yetukuri, L.; Oresic, M. BMC Bioinf. 2007, 8, 93
14. Redestig, H.; Fukushima, A.; Stenlund, H.; Moritz, T.; Arita, M.; Saito, K.; Kusano, M. Anal. Chem. 2009, 81, 7974-7980
15. Scholz, M.; Gatzek, S.; Sterling, A.; Fiehn, O.; Selbig, J. Bioinformatics (Oxford, U.K.) 2004, 20, 2447-54
16. Leek, J. T.; Storey, J. D. PLoS Genet. 2007, 3, 1724-1735
17. Stegle, O.; Kannan, A.; Durbin, R.; Winn, J. Proc. 12th Annu. Int. Conf. Res. Comput. Mol. Biol. 2008, 411-422
18. Redestig, H. Package crmn for R, 2012.
19. Saunders, E. C.; De Souza, D. P.; Naderer, T.; Sernee, M. F.; Ralton, J. E.; Doyle, M. A.; Macrae, J.; Chambers, J.; Heng, J.; Nahid, A.; Likic, V.; Mcconville, M. J. Parasitology 2010, 137, 1303-1313
20. Boughton, B.; Callahan, D.; Silva, C.; Bowne, J.; Nahid, A.; Rupasinghe, T.; Tull, D.; McConville, M.; Bacic, A.; Roessner, U. Anal. Chem. 2011, 83, 7523-7530
21. Benjamini, Y.; Hochberg, Y. J. R. Statist. Soc., Ser. B 1995, 57, 289-300
22. Dunn, W. B.; Broadhurst, D.; Begley, P.; Zelena, E.; Francis-McIntyre, S.; Anderson, N.; Brown, M.; Knowles, J. D.; Halsall, A.; Haselden, J. N.; Nicholls, A. W.; Wilson, I. D.; Kell, D. B.; Goodacre, R. Nat. Protoc. 2011, 6, 1060-1083
23. De Livera, A. M.; Bowne, J. Package metabolomics for R, 2012.