메뉴 건너뛰기




Volumn 30, Issue 2, 2013, Pages 131-139

Polymorphism in hcnAB Gene in Pseudomonas Species Reveals Ecologically Distinct Hydrogen Cyanide-Producing Populations

Author keywords

distinctness ratio; HCN synthase; Hydrogen cyanide; nucleotide diversity; partial hcnAB gene; Pseudomonas

Indexed keywords

BACTERIUM; CATALYST; CLUSTER ANALYSIS; CYANIDE; ENZYME; GENE; POLYMORPHISM;

EID: 84871304406     PISSN: 01490451     EISSN: 15210529     Source Type: Journal    
DOI: 10.1080/01490451.2011.654377     Document Type: Article
Times cited : (7)

References (26)
  • 3
    • 84871278811 scopus 로고
    • In: Bergey's Manual of Systematic Bacteriology, Bergey's Manual of Systematic Bacteriology, Holt JG, editors Baltimore, MD, Baltimore, MD,: Williams and Wilkins
    • Bergey's Manual of Systematic Bacteriology. 1984. Edited by: Holt, JG. Baltimore, MD: Williams and Wilkins.
    • (1984)
  • 4
    • 0034099024 scopus 로고    scopus 로고
    • Mechanism, regulation, and ecological role of bacterial cyanide biosynthesis
    • Blumer, C and Haas, D. 2000. Mechanism, regulation, and ecological role of bacterial cyanide biosynthesis. Arch Microbiol, 173: 170-177.
    • (2000) Arch Microbiol , vol.173 , pp. 170-177
    • Blumer, C.1    Haas, D.2
  • 5
    • 0004163807 scopus 로고    scopus 로고
    • San Francisco, San Francisco,: Pearson Benjamin-Cummings Publishing Company
    • th Ed, San Francisco: Pearson Benjamin-Cummings Publishing Company.
    • (2008) th Ed
    • Cappuccino, J.G.1    Sherman, N.2
  • 6
    • 70350238525 scopus 로고    scopus 로고
    • Pseudomonas fluorescens CHA0 can kill subterranean termite Odontotermes obesus by inhibiting cytochrome c oxidase of the termite respiratory chain
    • Devi, K K and Kothamasi, D. 2009. Pseudomonas fluorescens CHA0 can kill subterranean termite Odontotermes obesus by inhibiting cytochrome c oxidase of the termite respiratory chain. FEMS Microbiol Lett, 300: 195-200.
    • (2009) FEMS Microbiol Lett , vol.300 , pp. 195-200
    • Devi, K.K.1    Kothamasi, D.2
  • 7
    • 33845740247 scopus 로고    scopus 로고
    • Hydrogen cyanide producing rhizobacteria kill subterranean termite Odontotermes obesus (Rambur) by cyanide poisoning under in-vitro conditions
    • Devi, K K, Seth, N, Kothamasi, S and Kothamasi, D. 2007. Hydrogen cyanide producing rhizobacteria kill subterranean termite Odontotermes obesus (Rambur) by cyanide poisoning under in-vitro conditions. Curr Microbiol, 54: 74-78.
    • (2007) Curr Microbiol , vol.54 , pp. 74-78
    • Devi, K.K.1    Seth, N.2    Kothamasi, S.3    Kothamasi, D.4
  • 8
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • In: Munro H N, editors New York, New York,: Academic Press
    • Jukes, T H and Cantor, C R. 1969. "Evolution of protein molecules". In Mammalian Protein Metabolism, Edited by: Munro, H N. 21-132. New York: Academic Press.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 9
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • In: Stackebrandt E, Goodfellow M, editors Chichester, United Kingdom, Chichester, United Kingdom,: Academic Press
    • Lane, DJ. 1991. "16S/23S rRNA sequencing". In Nucleic Acid Techniques in Bacterial Systematics, Edited by: Stackebrandt, E and Goodfellow, M. 115-175. Chichester, United Kingdom: Academic Press.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 11
    • 0031750270 scopus 로고    scopus 로고
    • Characterization of the hcnABC gene cluster encoding hydrogen cyanide synthase and anaerobic regulation by ANR in the strictly aerobic biocontrol agent Pseudomonas fluorescens CHA0
    • Laville, J, Blumer, C, Schroetter, C V, Gaia, V, Défago, G, Keel, C and Haas, D. 1998. Characterization of the hcnABC gene cluster encoding hydrogen cyanide synthase and anaerobic regulation by ANR in the strictly aerobic biocontrol agent Pseudomonas fluorescens CHA0. J Bacteriol, 180: 3187-3196.
    • (1998) J Bacteriol , vol.180 , pp. 3187-3196
    • Laville, J.1    Blumer, C.2    Schroetter, C.V.3    Gaia, V.4    Défago, G.5    Keel, C.6    Haas, D.7
  • 12
    • 0003818289 scopus 로고    scopus 로고
    • Mantel Nonparametric Test Calculator. Version 2.0. School of Natural Resource Sciences, Queensland University of Technology, Australia
    • Available from. Accessed on 17 December 2011
    • Liedloff, AC. 1999. Mantel Nonparametric Test Calculator. Version 2.0. School of Natural Resource Sciences, Queensland University of Technology, Australia. Available from http://www.sci.qut.edu.au/nrs/mantel.htm. Accessed on 17 December 2011
    • (1999)
    • Liedloff, A.C.1
  • 13
    • 0014054519 scopus 로고
    • The detection of disease clustering and a generalized regression approach
    • Mantel, NA. 1967. The detection of disease clustering and a generalized regression approach. Cancer Res, 27: 209-220.
    • (1967) Cancer Res , vol.27 , pp. 209-220
    • Mantel, N.A.1
  • 15
    • 0034073254 scopus 로고    scopus 로고
    • Protein coding genes as molecular markers for ecologically distinct populations The case of two Bacillus species
    • Palys, T, Berger, E, Mitrica, I, Nakamura, L K and Cohan, F M. 2000. Protein coding genes as molecular markers for ecologically distinct populations. The case of two Bacillus species. Inter J Syst Evol Microbiol, 50: 1021-1028.
    • (2000) Inter J Syst Evol Microbiol , vol.50 , pp. 1021-1028
    • Palys, T.1    Berger, E.2    Mitrica, I.3    Nakamura, L.K.4    Cohan, F.M.5
  • 16
    • 0034748355 scopus 로고    scopus 로고
    • The global posttranscriptional regulator RsmA modulates production of virulence determinants and N-acylhomoserine lactones in Pseudomonas aeruginosa
    • Pessi, G, Williams, F, Hindle, Z, Heurlier, K, Holden, M T, Camara, M, Haas, D and Williams, P. 2001. The global posttranscriptional regulator RsmA modulates production of virulence determinants and N-acylhomoserine lactones in Pseudomonas aeruginosa. J Bacteriol, 183: 6676-6683.
    • (2001) J Bacteriol , vol.183 , pp. 6676-6683
    • Pessi, G.1    Williams, F.2    Hindle, Z.3    Heurlier, K.4    Holden, M.T.5    Camara, M.6    Haas, D.7    Williams, P.8
  • 17
    • 84957363038 scopus 로고
    • The utilization of carbon compounds by some actinomycetes as an aid for species determination
    • Pridham, T G and Gottlieb, D. 1948. The utilization of carbon compounds by some actinomycetes as an aid for species determination. J Bacteriol, 56: 107-114.
    • (1948) J Bacteriol , vol.56 , pp. 107-114
    • Pridham, T.G.1    Gottlieb, D.2
  • 18
    • 0037572054 scopus 로고    scopus 로고
    • Phylogeny of HCN synthase-encoding hcnBC genes in biocontrol fluorescent pseudomonads and its relationship with host plant species and HCN synthesis ability
    • Ramette, A, Frapolli, M, Défago, G and Moënne-Loccoz, Y. 2003. Phylogeny of HCN synthase-encoding hcnBC genes in biocontrol fluorescent pseudomonads and its relationship with host plant species and HCN synthesis ability. Mol Plant Microbe Interact, 16: 525-535.
    • (2003) Mol Plant Microbe Interact , vol.16 , pp. 525-535
    • Ramette, A.1    Frapolli, M.2    Défago, G.3    Moënne-Loccoz, Y.4
  • 19
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analysis by the coalescent and other methods
    • Rozas, J, Sanchez-DelBarrio, J C, Messeguer, X and Rozas, R. 2003. DnaSP, DNA polymorphism analysis by the coalescent and other methods. Bioinformatics, 19: 2496-2497.
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sanchez-DelBarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 20
    • 49349102916 scopus 로고    scopus 로고
    • Bacteria of the Burholderia cepacia complex are cyanogenic under biofilm and colonial growth conditions
    • Ryall, B, Lee, X, Zlosnik, J EA, Hoshino, S and Williams, H D. 2008. Bacteria of the Burholderia cepacia complex are cyanogenic under biofilm and colonial growth conditions. BMC Microbio, 8: 108
    • (2008) BMC Microbio , vol.8 , pp. 108
    • Ryall, B.1    Lee, X.2    Zlosnik, J.E.A.3    Hoshino, S.4    Williams, H.D.5
  • 21
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou, N and Nei, M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol, 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 23
    • 34250745953 scopus 로고    scopus 로고
    • PCR amplification of hydrogen cyanide biosynthetic locus hcnAB in Pseudomonas spp
    • Svercel, M, Duffy, B and Défago, G. 2007. PCR amplification of hydrogen cyanide biosynthetic locus hcnAB in Pseudomonas spp. J Microbiol Meth, 70: 209-213.
    • (2007) J Microbiol Meth , vol.70 , pp. 209-213
    • Svercel, M.1    Duffy, B.2    Défago, G.3
  • 24
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima, F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 25
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K, Peterson, D, Peterson, N, Stecher, G, Nei, M and Kumar, S. 2011. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol (submitted),
    • (2011) Mol Biol Evol (submitted)
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 26
    • 47249141071 scopus 로고    scopus 로고
    • Comparative analysis of the MIR319a microRNA locus in Arabidopsis and related Brassicaceae
    • Warthmann, N, Das, S, Lanz, C and Weigel, D. 2008. Comparative analysis of the MIR319a microRNA locus in Arabidopsis and related Brassicaceae. Mol Biol Evol, 25: 892-902.
    • (2008) Mol Biol Evol , vol.25 , pp. 892-902
    • Warthmann, N.1    Das, S.2    Lanz, C.3    Weigel, D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.