-
1
-
-
57649114800
-
Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic
-
Agogue H, Brink M, Dinasquet J, Herndl GJ. (2008). Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic. Nature 456: 788-791.
-
(2008)
Nature
, vol.456
, pp. 788-791
-
-
Agogue, H.1
Brink, M.2
Dinasquet, J.3
Herndl, G.J.4
-
2
-
-
67149118938
-
Mn(II) oxidation is catalyzed by heme peroxidases in 'Aurantimonas manganoxydans' strain SI85-9A1 and Erythrobacter sp. strain SD-21
-
Anderson CR, Johnson HA, Caputo N, Davis RE, Torpey JW, Tebo BM. (2009). Mn(II) oxidation is catalyzed by heme peroxidases in 'Aurantimonas manganoxydans' strain SI85-9A1 and Erythrobacter sp. strain SD-21. Appl Environ Microbiol 75: 4130-4138.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 4130-4138
-
-
Anderson, C.R.1
Johnson, H.A.2
Caputo, N.3
Davis, R.E.4
Torpey, J.W.5
Tebo, B.M.6
-
4
-
-
84871262058
-
Genomeenabled transcriptomics reveals archaeal populations that drive nitrification in a deep-sea hydrothermal plume
-
e-pub ahead of print 14 June 2012; doi:10.1038/ismej.2012.64
-
Baker BJ, Lesniewski RA, Dick GJ. (2012). Genomeenabled transcriptomics reveals archaeal populations that drive nitrification in a deep-sea hydrothermal plume. ISME J; e-pub ahead of print 14 June 2012; doi:10.1038/ismej.2012.64.
-
(2012)
ISME J
-
-
Baker, B.J.1
Lesniewski, R.A.2
Dick, G.J.3
-
5
-
-
84866702037
-
Hydrothermal plumes over spreading-center axes: Global distributions and geological inferences
-
Humphris SE, Zierenberg RA, Mullineaux LS, Thomson RE (eds) . American Geophysical Union: Washington, DC
-
Baker ET, German CR, Elderfield H. (1995). Hydrothermal plumes over spreading-center axes: global distributions and geological inferences. In: Humphris SE, Zierenberg RA, Mullineaux LS, Thomson RE (eds). Seafloor Hydrothermal Systems: Physical, Chemical, Biological, and Geological Interactions. American Geophysical Union: Washington, DC, pp 47-71.
-
(1995)
Seafloor Hydrothermal Systems: Physical, Chemical, Biological, and Geological Interactions
, pp. 47-71
-
-
Baker, E.T.1
German, C.R.2
Elderfield, H.3
-
6
-
-
80052282561
-
Tracing iron-fueled microbial carbon production within the hydrothermal plume at the Loihi seamount
-
Bennett SA, Hansman RL, Sessions AL, Nakamura K, Edwards KJ. (2011a). Tracing iron-fueled microbial carbon production within the hydrothermal plume at the Loihi seamount. Geochemica et Cosmochimica Acta 75: 5526-5539.
-
(2011)
Geochemica et Cosmochimica Acta
, vol.75
, pp. 5526-5539
-
-
Bennett, S.A.1
Hansman, R.L.2
Sessions, A.L.3
Nakamura, K.4
Edwards, K.J.5
-
7
-
-
80052091880
-
Dissolved and particulate organic carbon in hydrothermal plumes from the East Pacific Rise, 9150'N
-
Bennett SA, Statham PJ, Green DRH, Bris NL, McDermott JM, Prado F et al. (2011b). Dissolved and particulate organic carbon in hydrothermal plumes from the East Pacific Rise, 9150'N. Deep-Sea Res I 58: 922-931.
-
(2011)
Deep-Sea Res i
, vol.58
, pp. 922-931
-
-
Bennett, S.A.1
Statham, P.J.2
Green, D.R.H.3
Bris, N.L.4
McDermott, J.M.5
Prado, F.6
-
8
-
-
84859913716
-
Anaerobic oxidation of methane at different temperature regimes in Guaymas Basin hydrothermal sediments
-
Biddle JF, Cardman Z, Mendlovitz H, Albert DB, Lloyd KG, Boetius A et al. (2012). Anaerobic oxidation of methane at different temperature regimes in Guaymas Basin hydrothermal sediments. ISME J 6: 1018-1031.
-
(2012)
ISME J
, vol.6
, pp. 1018-1031
-
-
Biddle, J.F.1
Cardman, Z.2
Mendlovitz, H.3
Albert, D.B.4
Lloyd, K.G.5
Boetius, A.6
-
9
-
-
0023797015
-
Manganese geochemistry in the Guaymas Basin, Gulf of California
-
Campbell AC, Gieskes JM, Lupton JE, Lonsdale PF. (1988). Manganese geochemistry in the Guaymas Basin, Gulf of California. Geochim Cosmochim Acta 52: 345-357.
-
(1988)
Geochim Cosmochim Acta
, vol.52
, pp. 345-357
-
-
Campbell, A.C.1
Gieskes, J.M.2
Lupton, J.E.3
Lonsdale, P.F.4
-
10
-
-
78649710753
-
A cryptic sulfur cycle in oxygen-minimum-zone waters off the Chilean coast
-
Canfield DE, Stewart FJ, Thamdrup B, De Brabandere L, Dalsgaard T, Delong EF et al. (2010). A cryptic sulfur cycle in oxygen-minimum-zone waters off the Chilean coast. Science 330: 1375-1378.
-
(2010)
Science
, vol.330
, pp. 1375-1378
-
-
Canfield, D.E.1
Stewart, F.J.2
Thamdrup, B.3
De Brabandere, L.4
Dalsgaard, T.5
Delong, E.F.6
-
11
-
-
70149117756
-
Defining DNA-based operational taxonomic units for microbial-eukaryote ecology
-
Caron DA, Countway PD, Savai P, Gast RJ, Schnetzer A, Moorthi SD et al. (2009). Defining DNA-based operational taxonomic units for microbial-eukaryote ecology. Appl Environ Microbiol 75: 5797-5808.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 5797-5808
-
-
Caron, D.A.1
Countway, P.D.2
Savai, P.3
Gast, R.J.4
Schnetzer, A.5
Moorthi, S.D.6
-
12
-
-
33644700003
-
Toward automatic reconstruction of a highly resolved tree of life
-
Ciccarelli FD, Doerks T, von Mering C, Creevey CJ, Snel B, Bork P. (2006). Toward automatic reconstruction of a highly resolved tree of life. Science 311: 1283-1287.
-
(2006)
Science
, vol.311
, pp. 1283-1287
-
-
Ciccarelli, F.D.1
Doerks, T.2
Von Mering, C.3
Creevey, C.J.4
Snel, B.5
Bork, P.6
-
13
-
-
78649618453
-
Seasonal analysis of protistan community structure and diversity at the USC Microbial Observatory (San Pedro Channel, North Pacific Ocean)
-
Countway PD, Vigil PD, Schnetzer A, Moorthi SD, Caron DA. (2010). Seasonal analysis of protistan community structure and diversity at the USC Microbial Observatory (San Pedro Channel, North Pacific Ocean). Limnol Oceanogr 55: 2381-2396.
-
(2010)
Limnol Oceanogr
, vol.55
, pp. 2381-2396
-
-
Countway, P.D.1
Vigil, P.D.2
Schnetzer, A.3
Moorthi, S.D.4
Caron, D.A.5
-
14
-
-
0022924754
-
Bacterial scavenging of Mn and Fe in a mid- to far-field hydrothermal particle plume
-
Cowen JP, Massoth GJ, Baker ET. (1986). Bacterial scavenging of Mn and Fe in a mid- to far-field hydrothermal particle plume. Nature 322: 169-171.
-
(1986)
Nature
, vol.322
, pp. 169-171
-
-
Cowen, J.P.1
Massoth, G.J.2
Baker, E.T.3
-
16
-
-
0027872519
-
Methane oxidation in deep-sea hydrothermal plumes of the Endeavor Segment of the Juan de Fuca Ridge
-
de Angelis MA, Lilley MD, Olson EJ, Baross JA. (1993). Methane oxidation in deep-sea hydrothermal plumes of the Endeavor Segment of the Juan de Fuca Ridge. Deep-Sea Res 40: 1169-1186.
-
(1993)
Deep-Sea Res
, vol.40
, pp. 1169-1186
-
-
De Angelis, M.A.1
Lilley, M.D.2
Olson, E.J.3
Baross, J.A.4
-
17
-
-
31544483932
-
Community genomics among stratified microbial assemblages in the ocean's interior
-
DeLong EF, Preston CM, Mincer T, Rich V, Hallam SJ, Frigaard N-U et al. (2006). Community genomics among stratified microbial assemblages in the ocean's interior. Science 311: 496-503.
-
(2006)
Science
, vol.311
, pp. 496-503
-
-
Delong, E.F.1
Preston, C.M.2
Mincer, T.3
Rich, V.4
Hallam, S.J.5
Frigaard, N.-U.6
-
18
-
-
0013258174
-
Molecular characterization of sulfate-reducing bacteria in the Guaymas Basin
-
Dhillon A, Teske A, Dillon J, Stahl DA, Sogin ML. (2003). Molecular characterization of sulfate-reducing bacteria in the Guaymas Basin. Appl Environ Microbiol 69: 2765-2772.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 2765-2772
-
-
Dhillon, A.1
Teske, A.2
Dillon, J.3
Stahl, D.A.4
Sogin, M.L.5
-
19
-
-
33646592515
-
Manganese(II)-oxidizing Bacillus spores in Guaymas Basin hydrothermal sediments and plumes
-
Dick GJ, Lee YE, Tebo BM. (2006). Manganese(II)-oxidizing Bacillus spores in Guaymas Basin hydrothermal sediments and plumes. Appl Environ Microbiol 72: 3184-3190.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 3184-3190
-
-
Dick, G.J.1
Lee, Y.E.2
Tebo, B.M.3
-
20
-
-
43049149363
-
Genomic insights into Mn(II) oxidation by the marine alphaproteobacterium Aurantimonas sp. strain SI85-9A1
-
Dick GJ, Podell S, Johnson HA, Rivera-Espinoza Y, Bernier-Latmani R, McCarthy JK et al. (2008a). Genomic insights into Mn(II) oxidation by the marine alphaproteobacterium Aurantimonas sp. strain SI85-9A1. Appl Environ Microbiol 74: 2646-2658.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 2646-2658
-
-
Dick, G.J.1
Podell, S.2
Johnson, H.A.3
Rivera-Espinoza, Y.4
Bernier-Latmani, R.5
McCarthy, J.K.6
-
21
-
-
40549102748
-
Direct identification of a bacterial manganese(II) oxidase, the multicopper oxidase MnxG, from spores of several different marine Bacillus species
-
Dick GJ, Torpey JW, Beveridge TJ, Tebo BM. (2008b). Direct identification of a bacterial manganese(II) oxidase, the multicopper oxidase MnxG, from spores of several different marine Bacillus species. Appl Environ Microbiol 74: 1527-1534.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 1527-1534
-
-
Dick, G.J.1
Torpey, J.W.2
Beveridge, T.J.3
Tebo, B.M.4
-
22
-
-
70350015324
-
Community-wide analysis of microbial genome sequence signatures
-
Dick GJ, Andersson AF, Baker BJ, Simmons SL, Thomas BC, Yelton AP et al. (2009a). Community-wide analysis of microbial genome sequence signatures. Genome Biol 10: R85.
-
(2009)
Genome Biol
, vol.10
-
-
Dick, G.J.1
Andersson, A.F.2
Baker, B.J.3
Simmons, S.L.4
Thomas, B.C.5
Yelton, A.P.6
-
23
-
-
70349177696
-
Enzymatic microbial Mn(II) oxidation and Mn biooxide production in the Guaymas Basin hydrothermal plume
-
Dick GJ, Clement BG, Fodrie FJ, Webb SM, Bargar JR, Tebo BM. (2009b). Enzymatic microbial Mn(II) oxidation and Mn biooxide production in the Guaymas Basin hydrothermal plume. Geochim Cosmochim Acta 73: 6517-6530.
-
(2009)
Geochim Cosmochim Acta
, vol.73
, pp. 6517-6530
-
-
Dick, G.J.1
Clement, B.G.2
Fodrie, F.J.3
Webb, S.M.4
Bargar, J.R.5
Tebo, B.M.6
-
24
-
-
77953555505
-
Microbial diversity and biogeochemistry of the Guaymas Basin deep-sea hydrothermal plume
-
Dick GJ, Tebo BM. (2010). Microbial diversity and biogeochemistry of the Guaymas Basin deep-sea hydrothermal plume. Environ Microbiol 12: 1334-1347.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1334-1347
-
-
Dick, G.J.1
Tebo, B.M.2
-
25
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC. (2010). Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460-2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
26
-
-
0037188527
-
Benthic eukaryotic diversity in the Guaymas Basin hydrothermal vent environment
-
Edgcomb VP, Kysela DT, Teske A, Gomez AD, Sogin ML. (2002). Benthic eukaryotic diversity in the Guaymas Basin hydrothermal vent environment. Proc Natl Acad Sci USA 99: 7658-7662.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 7658-7662
-
-
Edgcomb, V.P.1
Kysela, D.T.2
Teske, A.3
Gomez, A.D.4
Sogin, M.L.5
-
27
-
-
0029775299
-
Mid-ocean ridge hydrothermal fluxes and the chemical composition of the ocean
-
Elderfield H, Schultz A. (1996). Mid-ocean ridge hydrothermal fluxes and the chemical composition of the ocean. Ann Rev Earth Planet Sci 24: 191-224.
-
(1996)
Ann Rev Earth Planet Sci
, vol.24
, pp. 191-224
-
-
Elderfield, H.1
Schultz, A.2
-
28
-
-
26844541457
-
Ubiquity and diversity of ammoniaoxidizing archaea in water columns and sediments of the ocean
-
Francis CA, Roberts KJ, Beman JM, Santoro AE, Oakley BB. (2005). Ubiquity and diversity of ammoniaoxidizing archaea in water columns and sediments of the ocean. Proc Natl Acad Sci USA 102: 14683-14688.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 14683-14688
-
-
Francis, C.A.1
Roberts, K.J.2
Beman, J.M.3
Santoro, A.E.4
Oakley, B.B.5
-
29
-
-
41649114407
-
Microbial community gene expression in ocean surface waters
-
Frias-Lopez J, Shi Y, Tyson GW, Coleman ML, Schuster SC, Chisholm SW et al. (2008). Microbial community gene expression in ocean surface waters. Proc Natl Acad Sci USA 105: 3805-3810.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 3805-3810
-
-
Frias-Lopez, J.1
Shi, Y.2
Tyson, G.W.3
Coleman, M.L.4
Schuster, S.C.5
Chisholm, S.W.6
-
30
-
-
77956293333
-
Diverse styles of submarine venting on the ultraslow spreading Mid-Cayman Rise
-
German CR, Bowen A, Coleman ML, Honig DL, Huber JA, Jakuba MV et al. (2010). Diverse styles of submarine venting on the ultraslow spreading Mid-Cayman Rise. Proc Natl Acad Sci USA 107: 14020-14025.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 14020-14025
-
-
German, C.R.1
Bowen, A.2
Coleman, M.L.3
Honig, D.L.4
Huber, J.A.5
Jakuba, M.V.6
-
31
-
-
0037252684
-
Rfam: An RNA family database
-
Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR. (2003). Rfam: an RNA family database. Nucleic Acids Res 31: 439-441.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 439-441
-
-
Griffiths-Jones, S.1
Bateman, A.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
-
32
-
-
18444408108
-
Contribution of Archaea to total prokaryotic production in the deep Atlantic Ocean
-
Herndl GJ, Reinthaler T, Teira E, van Aken H, Veth C, Pernthaler A et al. (2005). Contribution of Archaea to total prokaryotic production in the deep Atlantic Ocean. Appl Environ Microbiol 71: 2303-2309.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 2303-2309
-
-
Herndl, G.J.1
Reinthaler, T.2
Teira, E.3
Van Aken, H.4
Veth, C.5
Pernthaler, A.6
-
33
-
-
84856659328
-
Untangling genomes from metagenomes: Revealing an uncultured class of marine Euryarchaeota
-
Iverson V, Morris RM, Frazar CD, Berthiaume CT, Morales RL, Armbrust EV. (2012). Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota. Science 335: 587-590.
-
(2012)
Science
, vol.335
, pp. 587-590
-
-
Iverson, V.1
Morris, R.M.2
Frazar, C.D.3
Berthiaume, C.T.4
Morales, R.L.5
Armbrust, E.V.6
-
34
-
-
0027797266
-
An assessment of the effect of chemical scavenging within submarine hydrothermal plumes upon ocean geochemistry
-
Kadko D. (1993). An assessment of the effect of chemical scavenging within submarine hydrothermal plumes upon ocean geochemistry. Earth Planet Sci Lett 120: 361-374.
-
(1993)
Earth Planet Sci Lett
, vol.120
, pp. 361-374
-
-
Kadko, D.1
-
35
-
-
0021613580
-
Bacterial chemolithotrophy in the ocean is associated with sinking particles
-
Karl DM, Knauer GA, Martin JH, Ward BB. (1984). Bacterial chemolithotrophy in the ocean is associated with sinking particles. Nature 309: 54-56.
-
(1984)
Nature
, vol.309
, pp. 54-56
-
-
Karl, D.M.1
Knauer, G.A.2
Martin, J.H.3
Ward, B.B.4
-
36
-
-
0035945618
-
Archaeal dominance in the mesopelagic zone of the Pacific Ocean
-
Karner MB, DeLong EF, Karl DM. (2001). Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409: 507-510.
-
(2001)
Nature
, vol.409
, pp. 507-510
-
-
Karner, M.B.1
De Long, E.F.2
Karl, D.M.3
-
37
-
-
78751704176
-
A persistent oxygen anomaly reveals the fate of spilled methane in the deep Gulf of Mexico
-
Kessler JD, Valentine DL, Redmond MC, Du MR, Chan EW, Mendes SD et al. (2011). A persistent oxygen anomaly reveals the fate of spilled methane in the deep Gulf of Mexico. Science 331: 312-315.
-
(2011)
Science
, vol.331
, pp. 312-315
-
-
Kessler, J.D.1
Valentine, D.L.2
Redmond, M.C.3
Du, M.R.4
Chan, E.W.5
Mendes, S.D.6
-
38
-
-
42149146665
-
Microbial ammonia oxidation and enhanced nitrogen cycling in the Endeavour hydrothermal plume
-
Lam P, Cowen JP, Popp BN, Jones RD. (2008). Microbial ammonia oxidation and enhanced nitrogen cycling in the Endeavour hydrothermal plume. Geochim Cosmochim Acta 72: 2268-2286.
-
(2008)
Geochim Cosmochim Acta
, vol.72
, pp. 2268-2286
-
-
Lam, P.1
Cowen, J.P.2
Popp, B.N.3
Jones, R.D.4
-
40
-
-
59049088352
-
Detoxification of sulphidic African shelf waters by blooming chemolithotrophs
-
Lavik G, Stuhrmann T, Bruchert V, Van der Plas A, Mohrholz V, Lam P et al. (2009). Detoxification of sulphidic African shelf waters by blooming chemolithotrophs. Nature 457: 581-584.
-
(2009)
Nature
, vol.457
, pp. 581-584
-
-
Lavik, G.1
Stuhrmann, T.2
Bruchert, V.3
Van Der Plas, A.4
Mohrholz, V.5
Lam, P.6
-
41
-
-
78650543748
-
Carbon release by off-axis magmatism in a young sedimented spreading centre
-
Lizarralde D, Soule SA, Seewald JS, Proskurowski G. (2011). Carbon release by off-axis magmatism in a young sedimented spreading centre. Nat Geosci 4: 50-54.
-
(2011)
Nat Geosci
, vol.4
, pp. 50-54
-
-
Lizarralde, D.1
Soule, S.A.2
Seewald, J.S.3
Proskurowski, G.4
-
42
-
-
0027866311
-
Manganese scavenging and oxidation at hydrothermal vents and in vent plumes
-
Mandernack KW, Tebo BM. (1993). Manganese scavenging and oxidation at hydrothermal vents and in vent plumes. Geochim Cosmochim Acta 57: 3907-3923.
-
(1993)
Geochim Cosmochim Acta
, vol.57
, pp. 3907-3923
-
-
Mandernack, K.W.1
Tebo, B.M.2
-
43
-
-
49449099818
-
Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions
-
Martin-Cuadrado AB, Rodriguez-Valera F, Moreira D, Alba JC, Ivars-Martinez E, Henn MR et al. (2008). Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions. ISME J 2: 865-886.
-
(2008)
ISME J
, vol.2
, pp. 865-886
-
-
Martin-Cuadrado, A.B.1
Rodriguez-Valera, F.2
Moreira, D.3
Alba, J.C.4
Ivars-Martinez, E.5
Henn, M.R.6
-
44
-
-
0033990775
-
Geochemical constraints on primary productivity in submarine hydrothermal vent plumes
-
McCollum TM. (2000). Geochemical constraints on primary productivity in submarine hydrothermal vent plumes. Deep-Sea Res 47: 85-101.
-
(2000)
Deep-Sea Res
, vol.47
, pp. 85-101
-
-
McCollum, T.M.1
-
45
-
-
53549118607
-
The metagenomics RAST server - A public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, Kubal M et al. (2008). The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinform 9: 386.
-
(2008)
BMC Bioinform
, vol.9
, pp. 386
-
-
Meyer, F.1
Paarmann, D.2
D'souza, M.3
Olson, R.4
Glass, E.M.5
Kubal, M.6
-
46
-
-
16844376014
-
Molecular analysis of deep-sea hydrothermal vent aerobic methanotrophs by targeting genes of 16S rRNA and particulate methane monooxygenase
-
Naganuma T, Elsaied HE, Hayashi T. (2004). Molecular analysis of deep-sea hydrothermal vent aerobic methanotrophs by targeting genes of 16S rRNA and particulate methane monooxygenase. Mar Biotechnol 6: 503-509.
-
(2004)
Mar Biotechnol
, vol.6
, pp. 503-509
-
-
Naganuma, T.1
Elsaied, H.E.2
Hayashi, T.3
-
47
-
-
25144503993
-
Distribution, phylogenetic diversity and physiological characteristics of epsilonproteobacteria in a deep-sea hydrothermal field
-
Nakagawa S, Takai K, Inagaki F, Hirayama H, Nunoura T, Horikoshi K et al. (2005). Distribution, phylogenetic diversity and physiological characteristics of epsilonproteobacteria in a deep-sea hydrothermal field. Environ Microbiol 7: 1619-1632.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1619-1632
-
-
Nakagawa, S.1
Takai, K.2
Inagaki, F.3
Hirayama, H.4
Nunoura, T.5
Horikoshi, K.6
-
48
-
-
36349035942
-
Soluble and particulate methane monooxygenase gene clusters in the marine methanotroph Methylomicrobium sp strain NI
-
Nakamura T, Hoaki T, Hanada S, Maruyama A, Kamagata Y, Fuse H. (2007). Soluble and particulate methane monooxygenase gene clusters in the marine methanotroph Methylomicrobium sp strain NI. FEMS Microbiol Lett 277: 157-164.
-
(2007)
FEMS Microbiol Lett
, vol.277
, pp. 157-164
-
-
Nakamura, T.1
Hoaki, T.2
Hanada, S.3
Maruyama, A.4
Kamagata, Y.5
Fuse, H.6
-
49
-
-
33847118118
-
The Calyptogena magnifica chemoautotrophic symbiont genome
-
Newton IL, Woyke T, Auchtung TA, Dilly GF, Dutton RJ, Fisher MC et al. (2007). The Calyptogena magnifica chemoautotrophic symbiont genome. Science 315: 998-1000.
-
(2007)
Science
, vol.315
, pp. 998-1000
-
-
Newton, I.L.1
Woyke, T.2
Auchtung, T.A.3
Dilly, G.F.4
Dutton, R.J.5
Fisher, M.C.6
-
50
-
-
40949106450
-
Temporal and spatial archaeal colonization of hydrothermal vent deposits
-
Pagé A, Tivey MK, Stakes DS, Reysenbach AL. (2008). Temporal and spatial archaeal colonization of hydrothermal vent deposits. Environ Microbiol 4: 874-884.
-
(2008)
Environ Microbiol
, vol.4
, pp. 874-884
-
-
Pagé, A.1
Tivey, M.K.2
Stakes, D.S.3
Reysenbach, A.L.4
-
51
-
-
0036151819
-
Comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine bacteria and archaea
-
Pernthaler A, Preston CM, Pernthaler J, DeLong EF, Amann R. (2002). Comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine bacteria and archaea. Appl Environ Microbiol 68: 661-667.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 661-667
-
-
Pernthaler, A.1
Preston, C.M.2
Pernthaler, J.3
De Long, E.F.4
Amann, R.5
-
52
-
-
78049248905
-
Identification of novel methane-, ethane-, and propaneoxidizing bacteria at marine hydrocarbon seeps by stable isotope probing
-
Redmond MC, Valentine DL, Sessions AL. (2010). Identification of novel methane-, ethane-, and propaneoxidizing bacteria at marine hydrocarbon seeps by stable isotope probing. Appl Environ Microbiol 76: 6412-6422.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 6412-6422
-
-
Redmond, M.C.1
Valentine, D.L.2
Sessions, A.L.3
-
53
-
-
77954212697
-
Major contribution of autotrophy to microbial carbon cycling in the deep North Atlantic's interior
-
Reinthaler T, van Aken HM, Herndl GJ. (2010). Major contribution of autotrophy to microbial carbon cycling in the deep North Atlantic's interior. Deep-Sea Res Pt Ii 57: 1572-1580.
-
(2010)
Deep-Sea Res Pt Ii
, vol.57
, pp. 1572-1580
-
-
Reinthaler, T.1
Van Aken, H.M.2
Herndl, G.J.3
-
54
-
-
79952155329
-
Metal flux from hydrothermal vents increased by organic complexation
-
Sander SG, Koschinsky A. (2011). Metal flux from hydrothermal vents increased by organic complexation. Nat Geosci 4: 145-150.
-
(2011)
Nat Geosci
, vol.4
, pp. 145-150
-
-
Sander, S.G.1
Koschinsky, A.2
-
55
-
-
78249253024
-
Comparative analysis between protist communities from the deepsea pelagic ecosystem and specific deep hydrothermal habitats
-
Sauvadet AL, Gobet A, Guillou L. (2010). Comparative analysis between protist communities from the deepsea pelagic ecosystem and specific deep hydrothermal habitats. Environ Microbiol 12: 2946-2964.
-
(2010)
Environ Microbiol
, vol.12
, pp. 2946-2964
-
-
Sauvadet, Al.1
Gobet, A.2
Guillou, L.3
-
56
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, communitysupported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB et al. (2009). Introducing mothur: open-source, platform-independent, communitysupported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
-
57
-
-
66149130975
-
Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column
-
Shi Y, Tyson GW, DeLong EF. (2009). Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column. Nature 459: 266-269.
-
(2009)
Nature
, vol.459
, pp. 266-269
-
-
Shi, Y.1
Tyson, G.W.2
De Long, E.F.3
-
58
-
-
79956287318
-
Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean
-
Shi Y, Tyson GW, Eppley JM, DeLong EF. (2011). Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean. ISME J 5: 999-1013.
-
(2011)
ISME J
, vol.5
, pp. 999-1013
-
-
Shi, Y.1
Tyson, G.W.2
Eppley, J.M.3
De Long, E.F.4
-
59
-
-
41849142283
-
Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific
-
Stevens H, Ulloa O. (2008). Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific. Environ Microbiol 10: 1244-1259.
-
(2008)
Environ Microbiol
, vol.10
, pp. 1244-1259
-
-
Stevens, H.1
Ulloa, O.2
-
60
-
-
2342523936
-
Two Bacteria phylotypes are predominant in the Suiyo Seamount hydrothermal plume
-
Sunamura M, Higashi Y, Miyako C, Ishibashi J, Maruyama A. (2004). Two Bacteria phylotypes are predominant in the Suiyo Seamount hydrothermal plume. Appl Environ Microbiol 70: 1190-1198.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 1190-1198
-
-
Sunamura, M.1
Higashi, Y.2
Miyako, C.3
Ishibashi, J.4
Maruyama, A.5
-
61
-
-
12244263975
-
Phylogenetic screening of ribosomal RNA gene-containing clones in bacterial artificial chromosome (BAC) libraries from different depths in Monterey Bay
-
Suzuki MT, Preston CM, Beja O, de la Torre JR, Steward GF, DeLong EF. (2004). Phylogenetic screening of ribosomal RNA gene-containing clones in bacterial artificial chromosome (BAC) libraries from different depths in Monterey Bay. Microb Ecol 48: 473-488.
-
(2004)
Microb Ecol
, vol.48
, pp. 473-488
-
-
Suzuki, M.T.1
Preston, C.M.2
Beja, O.3
De La Torre, J.R.4
Steward, G.F.5
De Long, E.F.6
-
62
-
-
80052479893
-
Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean
-
Swan BK, Martinez-Garcia M, Preston CM, Sczyrba A, Woyke T, Lamy D et al. (2011). Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science 333: 1296-12300.
-
(2011)
Science
, vol.333
, pp. 1296-12300
-
-
Swan, B.K.1
Martinez-Garcia, M.2
Preston, C.M.3
Sczyrba, A.4
Woyke, T.5
Lamy, D.6
-
63
-
-
77950535600
-
Hydrothermal contribution to the oceanic dissolved iron inventory
-
Tagliabue A, Bopp L, Dutay JC, Bowie AR, Chever F, Jean-Baptiste P et al. (2010). Hydrothermal contribution to the oceanic dissolved iron inventory. Nat Geosci 3: 252-256.
-
(2010)
Nat Geosci
, vol.3
, pp. 252-256
-
-
Tagliabue, A.1
Bopp, L.2
Dutay, J.C.3
Bowie, A.R.4
Chever, F.5
Jean-Baptiste, P.6
-
64
-
-
9744270182
-
Spatial distribution of marine crenarchaeota group i in the vicinity of deep-sea hydrothermal systems
-
Takai K, Oida H, Suzuki Y, Hirayama H, Nakagawa S, Nunoura T et al. (2004). Spatial distribution of marine crenarchaeota group I in the vicinity of deep-sea hydrothermal systems. Appl Environ Microbiol 70: 2404-2413.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 2404-2413
-
-
Takai, K.1
Oida, H.2
Suzuki, Y.3
Hirayama, H.4
Nakagawa, S.5
Nunoura, T.6
-
65
-
-
77951498451
-
Distributions of putative aerobic methanotrophs in diverse pelagic marine environments
-
Tavormina PL, UsslerW, Joye SB, Harrison BK, Orphan VJ. (2010). Distributions of putative aerobic methanotrophs in diverse pelagic marine environments. ISME J 4: 700-710.
-
(2010)
ISME J
, vol.4
, pp. 700-710
-
-
Tavormina, P.L.1
Ussler, W.2
Joye, S.B.3
Harrison, B.K.4
Orphan, V.J.5
-
66
-
-
3042511801
-
Biogenic manganese oxides: Properties and mechanisms of formation
-
Tebo BM, Bargar JR, Clement BG, Dick GJ, Murray KJ, Parker D et al. (2004). Biogenic manganese oxides: properties and mechanisms of formation. Ann Rev Earth Planet Sci 32: 287-328.
-
(2004)
Ann Rev Earth Planet Sci
, vol.32
, pp. 287-328
-
-
Tebo, B.M.1
Bargar, J.R.2
Clement, B.G.3
Dick, G.J.4
Murray, K.J.5
Parker, D.6
-
67
-
-
0036205605
-
Microbial diversity of hydrothermal sediments in the Guaymas Basin: Evidence for anaerobic methanotrophic communities
-
Teske A, Hinrichs K-U, Edgcomb V, Gomez A, Kysela D, Sylva SP et al. (2002). Microbial diversity of hydrothermal sediments in the Guaymas Basin: evidence for anaerobic methanotrophic communities. Appl Environ Microbiol 68: 1994-2007.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 1994-2007
-
-
Teske, A.1
Hinrichs, K.-U.2
Edgcomb, V.3
Gomez, A.4
Kysela, D.5
Sylva, S.P.6
-
68
-
-
65349131856
-
Preservation of iron(II) by carbon-rich matrices in a hydrothermal plume
-
Toner BM, Fakra SC, Manganini SJ, Santelli CM, Marcus MA, Moffett JW et al. (2009). Preservation of iron(II) by carbon-rich matrices in a hydrothermal plume. Nat Geosci 2: 197-201.
-
(2009)
Nat Geosci
, vol.2
, pp. 197-201
-
-
Toner, B.M.1
Fakra, S.C.2
Manganini, S.J.3
Santelli, C.M.4
Marcus, M.A.5
Moffett, J.W.6
-
69
-
-
0022268218
-
Chemistry of submarine hydrothermal solutions at Guaymas Basin, Gulf of California
-
Von Damm KL, Edmond JM, Measures CI, Grant B. (1985). Chemistry of submarine hydrothermal solutions at Guaymas Basin, Gulf of California. Geochim Cosmochim Acta 49: 2221-2237.
-
(1985)
Geochim Cosmochim Acta
, vol.49
, pp. 2221-2237
-
-
Von Damm, K.L.1
Edmond, J.M.2
Measures, C.I.3
Grant, B.4
-
70
-
-
77952739182
-
Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea
-
Walker CB, de la Torre JR, Klotz MG, Urakawa H, Pinel N, Arp DJ et al. (2010). Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea. Proc Natl Acad Sci USA 107: 8818-8823.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 8818-8823
-
-
Walker, C.B.1
De La Torre, J.R.2
Klotz, M.G.3
Urakawa, H.4
Pinel, N.5
Arp, D.J.6
-
71
-
-
70350502063
-
Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones
-
Walsh DA, Zaikova E, Howes CG, Song YC, Wright JJ, Tringe SG et al. (2009). Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones. Science 326: 578-582.
-
(2009)
Science
, vol.326
, pp. 578-582
-
-
Walsh, D.A.1
Zaikova, E.2
Howes, C.G.3
Song, Y.C.4
Wright, J.J.5
Tringe, S.G.6
-
72
-
-
0022554943
-
Microorganisms in deep-sea hydrothermal plumes
-
Winn CD, Karl DM, Massoth GJ. (1986). Microorganisms in deep-sea hydrothermal plumes. Nature 320: 744-746.
-
(1986)
Nature
, vol.320
, pp. 744-746
-
-
Winn, C.D.1
Karl, D.M.2
Massoth, G.J.3
-
73
-
-
33947235074
-
The Sorcerer II Global Ocean Sampling expedition: Expanding the universe of protein families
-
Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, Remington K et al. (2007). The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. PLoS Biol 5: e16.
-
(2007)
PLoS Biol
, vol.5
-
-
Yooseph, S.1
Sutton, G.2
Rusch, D.B.3
Halpern, A.L.4
Williamson, S.J.5
Remington, K.6
-
74
-
-
34249855228
-
Deciphering RNA structural diversity and systematic phylogeny from microbial metagenomes
-
Zhu YL, Li Y, Pulukkunat DK. (2007). Deciphering RNA structural diversity and systematic phylogeny from microbial metagenomes. Nucleic Acids Res 35: 2283-2294.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 2283-2294
-
-
Zhu, Y.L.1
Li, Y.2
Pulukkunat, D.K.3
|