메뉴 건너뛰기




Volumn , Issue , 2012, Pages 57-68

Online transitivity clustering of biological data with missing values

Author keywords

Large Scale clustering; Missing Values; Transitivity Clustering; Web Interface

Indexed keywords

BIOLOGICAL DATA; BIOMEDICAL DATA; COST MATRICES; DATA SETS; DENSITY PARAMETERS; EXTENDED VERSIONS; GOLD STANDARDS; KNOWLEDGE EXTRACTION; LARGE SCALE CLUSTERING; MEASUREMENT TECHNIQUES; MISSING VALUES; ON-LINE DOCUMENTATIONS; POST PROCESSING; SIMILARITY FUNCTIONS; SIMILARITY MATRIX; TRANSITIVITY CLUSTERING; WEB INTERFACE; WEIGHTED GRAPH;

EID: 84871233616     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.4230/OASIcs.GCB.2012.57     Document Type: Conference Paper
Times cited : (2)

References (29)
  • 2
    • 65549104397 scopus 로고    scopus 로고
    • A roadmap of clustering algorithms: Finding a match for a biomedical application
    • Feb
    • Bill Andreopoulos, Aijun An, Xiaogang Wang, and Michael Schroeder. A roadmap of clustering algorithms: finding a match for a biomedical application. Briefing in Bioinformatics, Feb 2009.
    • (2009) Briefing in Bioinformatics
    • Andreopoulos, B.1    An, A.2    Wang, X.3    Schroeder, M.4
  • 3
    • 68049126343 scopus 로고    scopus 로고
    • Computational gene annotation in new genome assemblies using geneid
    • Enrique Blanco and Josep F Abril. Computational gene annotation in new genome assemblies using geneid. Methods Mol Biol, 537:243-61, 2009.
    • (2009) Methods Mol Biol , vol.537 , pp. 243-261
    • Blanco, E.1    Abril, J.F.2
  • 4
    • 79953212248 scopus 로고    scopus 로고
    • Exact algorithms for cluster editing: Evaluation and experiments
    • S. Böcker, S. Briesemeister, and G.W. Klau. Exact algorithms for cluster editing: Evaluation and experiments. Algorithmica, 60(2):316-334, 2011.
    • (2011) Algorithmica , vol.60 , Issue.2 , pp. 316-334
    • Böcker, S.1    Briesemeister, S.2    Klau, G.W.3
  • 5
    • 33745027619 scopus 로고    scopus 로고
    • A gold standard set of mechanistically diverse enzyme superfamilies
    • Shoshana D Brown, John A Gerlt, Jennifer L Seffernick, and Patricia C Babbitt. A gold standard set of mechanistically diverse enzyme superfamilies. Genome Biology, 7(1):R8, 2006.
    • (2006) Genome Biology , vol.7 , Issue.1
    • Brown, S.D.1    Gerlt, J.A.2    Seffernick, J.L.3    Babbitt, P.C.4
  • 7
    • 0036532753 scopus 로고    scopus 로고
    • A new nonparametric pairwise clustering algorithm based on iterative estimation of distance profiles
    • S. Dubnov, R. El-Yaniv, Y. Gdalyahu, E. Schneidman, N. Tishby, and G. Yona. A new nonparametric pairwise clustering algorithm based on iterative estimation of distance profiles. Machine Learning, 47(1):35-61, 2002.
    • (2002) Machine Learning , vol.47 , Issue.1 , pp. 35-61
    • Dubnov, S.1    El-Yaniv, R.2    Gdalyahu, Y.3    Schneidman, E.4    Tishby, N.5    Yona, G.6
  • 8
    • 0036081355 scopus 로고    scopus 로고
    • Gene expression omnibus: NCBI gene expression and hybridization array data repository
    • Jan
    • Ron Edgar, Michael Domrachev, and Alex E Lash. Gene expression omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res, 30(1):207-10, Jan 2002.
    • (2002) Nucleic Acids Res , vol.30 , Issue.1 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 9
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • Apr
    • A. J. Enright, S. Van Dongen, and C. A. Ouzounis. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Research, 30(7):1575-1584, Apr 2002.
    • (2002) Nucleic Acids Research , vol.30 , Issue.7 , pp. 1575-1584
    • Enright, A.J.1    Van Dongen, S.2    Ouzounis, C.A.3
  • 10
    • 0033944826 scopus 로고    scopus 로고
    • GeneRAGE: A robust algorithm for sequence clustering and domain detection
    • May
    • A. J. Enright and C. A. Ouzounis. GeneRAGE: a robust algorithm for sequence clustering and domain detection. Bioinformatics, 16(5):451-457, May 2000.
    • (2000) Bioinformatics , vol.16 , Issue.5 , pp. 451-457
    • Enright, A.J.1    Ouzounis, C.A.2
  • 11
    • 33847172327 scopus 로고    scopus 로고
    • Clustering by passing messages between data points
    • B. J. Frey and D. Dueck. Clustering by passing messages between data points. Science, 315(5814):972-976, 2007.
    • (2007) Science , vol.315 , Issue.5814 , pp. 972-976
    • Frey, B.J.1    Dueck, D.2
  • 13
    • 33845882199 scopus 로고    scopus 로고
    • Towards clustering of incomplete microarray data without the use of imputation
    • Jan
    • Dae-Won Kim, Ki-Young Lee, Kwang H Lee, and Doheon Lee. Towards clustering of incomplete microarray data without the use of imputation. Bioinformatics, 23(1):107-113, Jan 2007.
    • (2007) Bioinformatics , vol.23 , Issue.1 , pp. 107-113
    • Kim, D.1    Lee, K.2    Lee, K.H.3    Lee, D.4
  • 14
    • 0022735230 scopus 로고
    • NP-hard problems in hierarchical-tree clustering
    • Mirko Krivánek and Jaroslav Morávek. NP-hard problems in hierarchical-tree clustering. Acta Informatica, 23(3):311-323, 1986.
    • (1986) Acta Informatica , vol.23 , Issue.3 , pp. 311-323
    • Krivánek, M.1    Morávek, J.2
  • 16
  • 17
    • 33644560639 scopus 로고    scopus 로고
    • Leveraging enzyme structure-function relationships for functional inference and experimental design: The structure-function linkage database
    • Feb
    • Scott C-H Pegg, Shoshana D Brown, Sunil Ojha, Jennifer Seffernick, Elaine C Meng, John H Morris, Patricia J Chang, Conrad C Huang, Thomas E Ferrin, and Patricia C Babbitt. Leveraging enzyme structure-function relationships for functional inference and experimental design: The structure-function linkage database. Biochemistry, 45(8):2545-55, Feb 2006.
    • (2006) Biochemistry , vol.45 , Issue.8 , pp. 2545-2555
    • Pegg, S.C.-H.1    Brown, S.D.2    Ojha, S.3    Seffernick, J.4    Meng, E.C.5    Morris, J.H.6    Chang, P.J.7    Huang, C.C.8    Ferrin, T.E.9    Babbitt, P.C.10
  • 21
    • 0035749064 scopus 로고    scopus 로고
    • Fuzzy k-means clustering with missing values
    • M. Sarkar and T. Y. Leong. Fuzzy k-means clustering with missing values. Proc AMIA Symp, pages 588-592, 2001.
    • (2001) Proc AMIA Symp , pp. 588-592
    • Sarkar, M.1    Leong, T.Y.2
  • 25
    • 33747092661 scopus 로고    scopus 로고
    • Genome annotation transfer utility (gatu): Rapid annotation of viral genomes using a closely related reference genome
    • Vasily Tcherepanov, Angelika Ehlers, and Chris Upton. Genome annotation transfer utility (gatu): rapid annotation of viral genomes using a closely related reference genome. BMC Genomics, 7:150, 2006.
    • (2006) BMC Genomics , vol.7 , pp. 150
    • Tcherepanov, V.1    Ehlers, A.2    Upton, C.3
  • 26
    • 37249051926 scopus 로고    scopus 로고
    • Large scale clustering of protein sequences with force-A layout based heuristic for weighted cluster editing
    • Tobias Wittkop, Jan Baumbach, Francisco P Lobo, and Sven Rahmann. Large scale clustering of protein sequences with force-a layout based heuristic for weighted cluster editing. BMC Bioinformatics, 8:396, 2007.
    • (2007) BMC Bioinformatics , vol.8 , pp. 396
    • Wittkop, T.1    Baumbach, J.2    Lobo, F.P.3    Rahmann, S.4
  • 28
    • 79952433272 scopus 로고    scopus 로고
    • Comprehensive cluster analysis with transitivity clustering
    • Mar
    • Tobias Wittkop, Dorothea Emig, Anke Truss, Mario Albrecht, Sebastian Böcker, and Jan Baumbach. Comprehensive cluster analysis with transitivity clustering. Nat Protoc, 6(3):285-95, Mar 2011.
    • (2011) Nat Protoc , vol.6 , Issue.3 , pp. 285-295
    • Wittkop, T.1    Emig, D.2    Truss, A.3    Albrecht, M.4    Böcker, S.5    Baumbach, J.6
  • 29
    • 84863682471 scopus 로고    scopus 로고
    • Extension and robustness of transitivity clustering for protein-protein interaction network analysis
    • Tobias Wittkop, Sven Rahmann, Richard Röttger, Sebastian Böcker, and Jan Baumbach. Extension and robustness of transitivity clustering for protein-protein interaction network analysis. Internet Mathematics, 7(4):255-273, 2011.
    • (2011) Internet Mathematics , vol.7 , Issue.4 , pp. 255-273
    • Wittkop, T.1    Rahmann, S.2    Röttger, R.3    Böcker, S.4    Baumbach, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.