Genome sequence of Borrelia garinii strain NMJW1, isolated from China

Journal of Bacteriology

Volumn 194, Issue 23, 2012, Pages 6660-6661

  Jiang, Baogui ^a   Yao, Hongwu ^a   Tong, Yigang ^a   Yang, Xiaofeng ^b   Huang, Yong ^a   Jiang, Jiafu ^a   Cao, Wuchun ^a  

^a BEIJING INSTITUTE OF MICROBIOLOGY AND EPIDEMIOLOGY   (China)

^b INDIANA UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; RIBOSOME RNA; TRANSFER RNA;

BACTERIAL CHROMOSOME; BACTERIAL GENE; BACTERIAL GENOME; BACTERIUM ISOLATION; BORRELIA GARINII; CHINA; GENE SEQUENCE; IXODES PERSULCATUS; NONHUMAN; NOTE; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

ANIMALS; BORRELIA BURGDORFERI GROUP; CHINA; DNA, BACTERIAL; GENOME, BACTERIAL; IXODES; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; RNA, RIBOSOMAL; RNA, TRANSFER; SEQUENCE ANALYSIS, DNA;

BORRELIA GARINII; IXODES PERSULCATUS;

EID: 84871055559     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01844-12     Document Type: Note

References (15)

1. Altschul SF, et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
2. Callister SM, et al. 1990. Effects of bovine serum albumin on the ability of Barbour-Stoenner-Kelly medium to detect Borrelia burgdorferi. J. Clin. Microbiol. 28:363-365.
3. Chu CY, et al. 2008. Novel genospecies of Borrelia burgdorferi sensu lato from rodents and ticks in southwestern China. J. Clin. Microbiol. 46: 3130-3133.
4. Delcher AL, Bratke KA, Powers EC, Salzberg SL. 2007. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23:673-679.
5. Glockner G, et al. 2004. Comparative analysis of the Borrelia garinii genome. Nucleic Acids Res. 32:6038-6046.
6. Lagesen K, et al. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
7. Li R, et al. 2010. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 20:265-272.
8. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
9. Margulies M, et al. 2005. Genome sequencing in microfabricated highdensity picolitre reactors. Nature 437:376-380.
10. Masuzawa T, et al. 2001. Borrelia sinica sp. nov., a Lyme disease-related Borrelia species isolated in China. Int. J. Syst. Evol. Microbiol. 51(Pt 5): 1817-1824.
11. Postic D, Garnier M, Baranton G. 2007. Multilocus sequence analysis of atypical Borrelia burgdorferi sensu lato isolates-description of Borrelia californiensis sp. nov., and genomospecies 1 and 2. Int. J. Med. Microbiol. 297:263-271.
12. Richter D. et al. 2006. Delineation of Borrelia burgdorferi sensu lato species by multilocus sequence analysis and confirmation of the delineation of Borrelia spielmanii sp. nov. Int. J. Syst. Evol. Microbiol. 56(Pt 4):873-881.
13. Rudenko N, Golovchenko M, Grubhoffer L, Oliver JH, Jr.2009. Borrelia carolinensis sp. nov., a new (14th) member of the Borrelia burgdorferi sensu lato complex from the southeastern region of the United States. J. Clin. Microbiol. 47:134-141.
14. Rudenko N et al. 2009. Delineation of a new species of the Borrelia burgdorferi sensu lato complex, Borrelia americana sp. nov. J. Clin. Microbiol. 47:3875-3880.
15. Wang G, et al. 2004. Variations in Barbour-Stoenner-Kelly culture medium modulate infectivity and pathogenicity of Borrelia burgdorferi clinical isolates. Infect. Immun. 72:6702-6706.