Draft genome sequence of pantoea sp. strain A4, a Rafflesia- associated bacterium that produces N-acylhomoserine lactones as quorum-sensing molecules

Journal of Bacteriology

Volumn 194, Issue 23, 2012, Pages 6610-6610

  Hong, Kar Wai ^a   Gan, Han Ming ^b   Low, Siew Moon ^a   Lee, Patrick Kok Yuen ^a   Chong, Yee Meng ^a   Yin, Wai Fong ^a   Chan, Kok Gan ^a  

^a UNIVERSITY OF MALAYA   (Malaysia)

^b ScienceVision SB   (Malaysia)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; LACTONE DERIVATIVE; N ACYLHOMOSERINE LACTONE DERIVATIVE; UNCLASSIFIED DRUG;

ANIMAL EXPERIMENT; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATE; DRAFT GENOME SEQUENCING; FLOWER; GENE SEQUENCE; MOLECULAR RECOGNITION; MOLECULE; NONHUMAN; NOTE; PANTOEA; PLANT; PRIORITY JOURNAL; QUORUM SENSING; RAFFLESIA; RAIN FOREST;

ACYL-BUTYROLACTONES; DNA, BACTERIAL; FERNS; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; PANTOEA; QUORUM SENSING; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; PANTOEA SP.; RAFFLESIA;

EID: 84871045898     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01619-12     Document Type: Note

References (9)

1. Barkman TJ, Lim SH, Salleh KM, Nais J. 2004. Mitochondrial DNA sequences reveal the photosynthetic relatives of Rafflesia, the world's largest flower. Proc. Natl. Acad. Sci. U. S. A. 101:787-792.
2. Bendiksby M, et al. 2010. Elucidating the evolutionary history of the Southeast Asian, holoparasitic, giant-flowered Rafflesiaceae: pliocene vicariance, morphological convergence and character displacement. Mol. Phylogenet. Evol. 57:620-633.
3. Benson DA, et al. 2012. GenBank. Nucleic Acids Res. 40(Database issue): D48-D53.
4. Hyatt D, et al. 2010. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11:119. doi:10.1186/1471-2105-11-119.
5. Lagesen K, et al. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
6. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
7. Morohoshi T, et al. 2007. The plant pathogen Pantoea ananatis produces N-acylhomoserine lactone and causes center rot disease of onion by quorum sensing. J. Bacteriol. 189:8333-8338.
8. Morohoshi T, Ogata Y, Ikeda T. 2011. Cell aggregation is negatively regulated by N-acylhomoserine lactone-mediated quorum sensing in Pantoea ananatis SK-1. J. Biosci. Bioeng. 112:566-569.
9. von Bodman SB, Majerczak DR, Coplin DL. 1998. A negative regulator mediates quorum-sensing control of exopolysaccharide production in Pantoea stewartii subsp. stewartii. Proc. Natl. Acad. Sci. U. S. A. 95:7687-7692.