-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
78649688383
-
A functional genomics approach identifies candidate effectors from the aphid species myzus persicae (green peach aphid)
-
Published online
-
Bos, J. I., Prince, D., Pitino, M., Maffei, M. E., Win, J., and Hogenhout, S. A. 2010. A Functional genomics approach identifies candidate effectors from the aphid species Myzus persicae (green peach aphid). PLoS Genet. 6:e1001216. Published online.
-
(2010)
PLoS Genet.
, Issue.6
-
-
Bos, J.I.1
Prince, D.2
Pitino, M.3
Maffei, M.E.4
Win, J.5
Hogenhout, S.A.6
-
3
-
-
64849087712
-
The secreted salivary proteome of the pea aphid acyrthosiphon pisum characterised by mass spectrometry
-
Carolan, J. C., Fitzroy, C. I., Ashton, P. D., Douglas, A. E., and Wilkinson, T. L. 2009. The secreted salivary proteome of the pea aphid Acyrthosiphon pisum characterised by mass spectrometry. Proteomics 9:2457-2467.
-
(2009)
Proteomics
, vol.9
, pp. 2457-2467
-
-
Carolan, J.C.1
Fitzroy, C.I.2
Ashton, P.D.3
Douglas, A.E.4
Wilkinson, T.L.5
-
4
-
-
79953693610
-
Predicted effector molecules in the salivary secretome of the pea aphid (acyrthosiphon pisum)-A dual transcriptomic-proteomic approach
-
Carolan, J. C., Caragea, D., Reardon, K. T., Mutti, N. S., Dittmer, N., Pappan, K., Cui, F., Castaneto, M., Poulain, J., Dossat, C., Tagu, D., Reese, J. C., Reeck, G. R., Wilkinson, T. L., and Edwards, O. R. 2011. Predicted effector molecules in the salivary secretome of the pea aphid (Acyrthosiphon pisum)-A dual transcriptomic-proteomic approach. J. Proteome Res. 10:1505-1518.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 1505-1518
-
-
Carolan, J.C.1
Caragea, D.2
Reardon, K.T.3
Mutti, N.S.4
Dittmer, N.5
Pappan, K.6
Cui, F.7
Castaneto, M.8
Poulain, J.9
Dossat, C.10
Tagu, D.11
Reese, J.C.12
Reeck, G.R.13
Wilkinson, T.L.14
Edwards, O.R.15
-
5
-
-
0033921079
-
Salivary proteins of aphids, a pilot study on identification, separation and immunolocalisation
-
Cherqui, A., and Tjallingii, W. F. 2000. Salivary proteins of aphids, a pilot study on identification, separation and immunolocalisation. J. Insect Physiol. 46:1177-1186.
-
(2000)
J. Insect Physiol.
, vol.46
, pp. 1177-1186
-
-
Cherqui, A.1
Tjallingii, W.F.2
-
6
-
-
79952586566
-
Genetic disassembly and combinatorial reassembly identify a minimal functional repertoire of type iii effectors in pseudomonas syringae
-
Cunnac, S., Chakravarthy, S., Kvitko, B. H., Russell, A. B., Martin, G. B., and Collmer, A. 2012. Genetic disassembly and combinatorial reassembly identify a minimal functional repertoire of type III effectors in Pseudomonas syringae. Proc. Natl. Acad. Sci. U.S.A. 108:2975-2980.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 2975-2980
-
-
Cunnac, S.1
Chakravarthy, S.2
Kvitko, B.H.3
Russell, A.B.4
Martin, G.B.5
Collmer, A.6
-
7
-
-
77956636164
-
Host plant resistance to aphids in cultivated crops: Genetic and molecular bases, and interactions with aphid populations
-
Dogimont, C., Bendahmane, A., Chovelon, V., and Boissot, N. 2010. Host plant resistance to aphids in cultivated crops: Genetic and molecular bases, and interactions with aphid populations. C. R. Biol. 333:566-573.
-
(2010)
C. R. Biol.
, vol.333
, pp. 566-573
-
-
Dogimont, C.1
Bendahmane, A.2
Chovelon, V.3
Boissot, N.4
-
8
-
-
3042666256
-
Muscle: Multiple sequence alignment with high accuracy and high throughput
-
Edgar, R. C. 2004a. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
9
-
-
13244255415
-
Muscle: A multiple sequence alignment method with reduced time and space complexity
-
Edgar, R. C. 2004b. MUSCLE: A multiple sequence alignment method with reduced time and space complexity. BMC Bioinf. 5:113.
-
(2004)
BMC Bioinf.
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
10
-
-
0028168856
-
A codon-based model of nucleotide substitution for protein-coding dna sequences
-
Goldman, N., and Yang, Z. 1994. A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol. Biol. Evol. 11:725-736.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 725-736
-
-
Goldman, N.1
Yang, Z.2
-
11
-
-
0034610392
-
Genetic evidence for the in planta role of phloem-specific plasma membrane sucrose transporters
-
Gottwald, J. R., Krysan, P. J., Young, J. C., Evert, R. F., and Sussman, M. R. 2000. Genetic evidence for the in planta role of phloem-specific plasma membrane sucrose transporters. Proc. Natl. Acad. Sci. U.S.A. 97:13979-13984.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 13979-13984
-
-
Gottwald, J.R.1
Krysan, P.J.2
Young, J.C.3
Evert, R.F.4
Sussman, M.R.5
-
12
-
-
40849094499
-
Identification of aphid salivary proteins: A proteomic investigation of myzus persicae
-
Harmel, N., Letocart, E., Cherqui, A., Giordanengo, P., Mazzucchelli, G., Guillonneau, F., De Pauw, E., Haubruge, E., and Francis, F. 2008. Identification of aphid salivary proteins: A proteomic investigation of Myzus persicae. Insect Mol. Biol. 17:165-174.
-
(2008)
Insect Mol. Biol.
, vol.17
, pp. 165-174
-
-
Harmel, N.1
Letocart, E.2
Cherqui, A.3
Giordanengo, P.4
Mazzucchelli, G.5
Guillonneau, F.6
De Pauw, E.7
Haubruge, E.8
Francis, F.9
-
13
-
-
79961165989
-
Effector proteins that modulate plant-insect interactions
-
Hogenhout, S. A., and Bos, J. I. 2011. Effector proteins that modulate plant-insect interactions. Curr. Opin. Plant Biol. 14:422-428.
-
(2011)
Curr. Opin. Plant Biol.
, vol.14
, pp. 422-428
-
-
Hogenhout, S.A.1
Bos, J.I.2
-
14
-
-
59749094857
-
Emerging concepts in effector biology of plant-associated organisms
-
Hogenhout, S. A., Van der Hoorn, R. A., Terauchi, R., and Kamoun, S. 2009. Emerging concepts in effector biology of plant-associated organisms. Mol. Plant-Microbe Interact. 22:115-122.
-
(2009)
Mol. Plant-Microbe Interact.
, vol.22
, pp. 115-122
-
-
Hogenhout, S.A.1
Van Der Hoorn, R.A.2
Terauchi, R.3
Kamoun, S.4
-
15
-
-
77649141259
-
Genome sequence of the pea aphid acyrthosiphon pisum
-
IAGC. Published online
-
IAGC. 2010. Genome sequence of the pea aphid Acyrthosiphon pisum. PLoS Biol. 8:e1000313. Published online.
-
(2010)
PLoS Biol.
, Issue.8
-
-
-
16
-
-
0028906291
-
New methods for estimating the numbers of synonymous and nonsynonymous substitutions
-
Ina, Y. 1995. New methods for estimating the numbers of synonymous and nonsynonymous substitutions. J. Mol. Evol. 40:190-226.
-
(1995)
J. Mol. Evol.
, vol.40
, pp. 190-226
-
-
Ina, Y.1
-
17
-
-
79956201615
-
A model of the c14-epic complex indicates hotspots for a protease-inhibitor arms race in the oomycete-potato interaction
-
Kaschani, F., and Van der Hoorn, R. A. 2011. A model of the C14-EPIC complex indicates hotspots for a protease-inhibitor arms race in the oomycete-potato interaction. Plant Signal. Behav. 6:109-112.
-
(2011)
Plant Signal. Behav.
, Issue.6
, pp. 109-112
-
-
Kaschani, F.1
Van Der Hoorn, R.A.2
-
18
-
-
78649768763
-
An effector-targeted protease contributes to defense against phytophthora infestans and is under diversifying selection in natural hosts
-
Kaschani, F., Shabab, M., Bozkurt, T., Shindo, T., Schornack, S., Gu, C., Ilyas, M., Win, J., Kamoun, S., and van der Hoorn, R. A. 2010. An effector-targeted protease contributes to defense against Phytophthora infestans and is under diversifying selection in natural hosts. Plant Physiol. 154:1794-1804.
-
(2010)
Plant Physiol.
, vol.154
, pp. 1794-1804
-
-
Kaschani, F.1
Shabab, M.2
Bozkurt, T.3
Shindo, T.4
Schornack, S.5
Gu, C.6
Ilyas, M.7
Win, J.8
Kamoun, S.9
Van Der Hoorn, R.A.10
-
19
-
-
0022005270
-
A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes
-
Li, W. H., Wu, C. I., and Luo, C. C. 1985. A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol. Biol. Evol. 2:150-174.
-
(1985)
Mol. Biol. Evol.
, vol.2
, pp. 150-174
-
-
Li, W.H.1
Wu, C.I.2
Luo, C.C.3
-
20
-
-
20044368434
-
Patterns of diversifying selection in the phytotoxin-like scr74 gene family of phytophthora infestans
-
Liu, Z., Bos, J. I., Armstrong, M., Whisson, S. C., da Cunha, L., Torto-Alalibo, T., Win, J., Avrova, A. O., Wright, F., Birch, P. R., and Kamoun, S. 2005. Patterns of diversifying selection in the phytotoxin-like scr74 gene family of Phytophthora infestans. Mol. Biol. Evol. 22:659-672.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 659-672
-
-
Liu, Z.1
Bos, J.I.2
Armstrong, M.3
Whisson, S.C.4
Da Cunha, L.5
Torto-Alalibo, T.6
Win, J.7
Avrova, A.O.8
Wright, F.9
Birch, P.R.10
Kamoun, S.11
-
21
-
-
0032960554
-
Aphid saliva
-
Miles, P. 1999. Aphid saliva. Biol. Rev. 74:41-85.
-
(1999)
Biol. Rev.
, vol.74
, pp. 41-85
-
-
Miles, P.1
-
22
-
-
33750585000
-
Rnai knockdown of a salivary transcript leading to lethality in the pea aphid, acyrthosiphon pisum
-
Mutti, N. S., Park, Y., Reese, J. C., and Reeck, G. R. 2006. RNAi knockdown of a salivary transcript leading to lethality in the pea aphid, Acyrthosiphon pisum. J. Insect Sci. 6:1-7.
-
(2006)
J. Insect Sci.
, vol.6
, pp. 1-7
-
-
Mutti, N.S.1
Park, Y.2
Reese, J.C.3
Reeck, G.R.4
-
23
-
-
48249136098
-
A protein from the salivary glands of the pea aphid, acyrthosiphon pisum, is essential in feeding on a host plant
-
Mutti, N. S., Louis, J., Pappan, L. K., Pappan, K., Begum, K., Chen, M.S., Park, Y., Dittmer, N., Marshall, J., Reese, J. C., and Reeck, G. R. 2008. A protein from the salivary glands of the pea aphid, Acyrthosiphon pisum, is essential in feeding on a host plant. Proc. Natl. Acad. Sci. U.S.A. 105:9965-9969p
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
-
-
Mutti, N.S.1
Louis, J.2
Pappan, L.K.3
Pappan, K.4
Begum, K.5
Chen, M.S.6
Park, Y.7
Dittmer, N.8
Marshall, J.9
Reese, J.C.10
Reeck, G.R.11
-
24
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei, M., and Gojobori, T. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3:418-426.
-
(1986)
Mol. Biol. Evol.
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
25
-
-
84858753331
-
Proteomic analysis of secreted saliva from russian wheat aphid (diuraphis noxia kurd.) biotypes that differ in virulence to wheat
-
Nicholson, S. J., Hartson, S. D., and Puterka, G. J. 2012. Proteomic analysis of secreted saliva from Russian wheat aphid (Diuraphis noxia Kurd.) biotypes that differ in virulence to wheat. J. Proteomics 75:2252-2268.
-
(2012)
J. Proteomics
, vol.75
, pp. 2252-2268
-
-
Nicholson, S.J.1
Hartson, S.D.2
Puterka, G.J.3
-
26
-
-
0031972161
-
Likelihood models for detecting positively selected amino acid sites and applications to the hiv-1 envelope gene
-
Nielsen, R., and Yang, Z. 1998. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics 148:929-936.
-
(1998)
Genetics
, vol.148
, pp. 929-936
-
-
Nielsen, R.1
Yang, Z.2
-
27
-
-
77955324958
-
Comparative analysis of the acyrthosiphon pisum genome and expressed sequence tag-based gene sets from other aphid species
-
Ollivier, M., Legeai, F., and Rispe, C. 2010. Comparative analysis of the Acyrthosiphon pisum genome and expressed sequence tag-based gene sets from other aphid species. Insect Mol. Biol. 19 (Suppl. 2):33-45.
-
(2010)
Insect Mol. Biol.
, vol.19
, Issue.SUPPL. 2
, pp. 33-45
-
-
Ollivier, M.1
Legeai, F.2
Rispe, C.3
-
28
-
-
84865831413
-
Comparison of gene repertoires and patterns of evolutionary rates in eight aphid species that differ by reproductive mode
-
Ollivier, M., Gabaldon, T., Poulain, J., Gavory, F., Leterme, N., Gauthier, J. P., Legeai, F., Tagu, D., Simon, J. C., and Rispe, C. 2012. Comparison of gene repertoires and patterns of evolutionary rates in eight aphid species that differ by reproductive mode. Genome Biol. Evol. 4:155-167.
-
(2012)
Genome Biol. Evol.
, vol.4
, pp. 155-167
-
-
Ollivier, M.1
Gabaldon, T.2
Poulain, J.3
Gavory, F.4
Leterme, N.5
Gauthier, J.P.6
Legeai, F.7
Tagu, D.8
Simon, J.C.9
Rispe, C.10
-
29
-
-
80053607870
-
Silencing of aphid genes by dsrna feeding from plants
-
Published online
-
Pitino, M., Coleman, A. D., Maffei, M. E., Ridout, C. J., and Hogenhout, S. A. 2011. Silencing of aphid genes by dsRNA feeding from plants. PLoS One 6:e25709. Published online.
-
(2011)
PLoS One
, vol.6
-
-
Pitino, M.1
Coleman, A.D.2
Maffei, M.E.3
Ridout, C.J.4
Hogenhout, S.A.5
-
30
-
-
38649099356
-
Genomic resources for myzus persicae: Est sequencing, snp identification, and microarray design
-
Ramsey, J. S., Wilson, A. C., de Vos, M., Sun, Q., Tamborindeguy, C., Winfield, A., Malloch, G., Smith, D. M., Fenton, B., Gray, S. M., and Jander, G. 2007. Genomic resources for Myzus persicae: EST sequencing, SNP identification, and microarray design. BMC Genomics 8:423.
-
(2007)
BMC Genomics
, vol.8
, pp. 423
-
-
Ramsey, J.S.1
Wilson, A.C.2
De Vos, M.3
Sun, Q.4
Tamborindeguy, C.5
Winfield, A.6
Malloch, G.7
Smith, D.M.8
Fenton, B.9
Gray, S.M.10
Jander, G.11
-
31
-
-
33748714168
-
-
Oxford University Press, Oxford
-
Schoonhoven, L., van Loon, J. J., and Dicke, M. 2005. Insect-Plant Biology. Oxford University Press, Oxford.
-
(2005)
Insect-Plant Biology
-
-
Schoonhoven, L.1
Van Loon, J.J.2
Dicke, M.3
-
32
-
-
59849112292
-
A water-specific aquaporin involved in aphid osmoregulation
-
Shakesby, A. J., Wallace, I. S., Isaacs, H. V., Pritchard, J., Roberts, D. M., and Douglas, A. E. 2009. A water-specific aquaporin involved in aphid osmoregulation. Insect Biochem. Mol. Biol. 39:1-10.
-
(2009)
Insect Biochem. Mol. Biol.
, vol.39
, pp. 1-10
-
-
Shakesby, A.J.1
Wallace, I.S.2
Isaacs, H.V.3
Pritchard, J.4
Roberts, D.M.5
Douglas, A.E.6
-
33
-
-
82755186471
-
Phytoplasma protein effector sap11 enhances insect vector reproduction by manipulating plant development and defense hormone biosynthesis
-
Sugio, A., Kingdom, H. N., MacLean, A. M., Grieve, V. M., and Hogenhout, S. A. 2011. Phytoplasma protein effector SAP11 enhances insect vector reproduction by manipulating plant development and defense hormone biosynthesis. Proc. Natl. Acad. Sci. U.S.A. 108:E1254-1263.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
-
-
Sugio, A.1
Kingdom, H.N.2
MacLean, A.M.3
Grieve, V.M.4
Hogenhout, S.5
-
34
-
-
84860493606
-
Salivary glucose oxidase from caterpillars mediates the induction of rapid and delayed-induced defenses in the tomato plant
-
Published online
-
Tian, D., Peiffer, M., Shoemaker, E., Tooker, J., Haubruge, E., Francis, F., Luthe, D. S., and Felton, G. W. 2012. Salivary glucose oxidase from caterpillars mediates the induction of rapid and delayed-induced defenses in the tomato plant. PLoS One 7:e36168. Published online.
-
(2012)
PLoS One
, vol.7
-
-
Tian, D.1
Peiffer, M.2
Shoemaker, E.3
Tooker, J.4
Haubruge, E.5
Francis, F.6
Luthe, D.S.7
Felton, G.W.8
-
35
-
-
33644929267
-
Salivary secretions by aphids interacting with proteins of phloem wound responses
-
Tjallingii, W. 2006. Salivary secretions by aphids interacting with proteins of phloem wound responses. J. Exp. Bot. 57:739-745.
-
(2006)
J. Exp. Bot.
, vol.57
, pp. 739-745
-
-
Tjallingii, W.1
-
36
-
-
0034487561
-
Molecular data support a rapid radiation of aphids in the cretaceous and multiple origins of host alternation
-
Von Dohlen, C. D., and Moran, N. A. 2000. Molecular data support a rapid radiation of aphids in the Cretaceous and multiple origins of host alternation. Biol. J. Linn. Soc. Lond. 71:689-717.
-
(2000)
Biol. J. Linn. Soc. Lond.
, vol.71
, pp. 689-717
-
-
Von Dohlen, C.D.1
Moran, N.A.2
-
37
-
-
34547221318
-
Molecular sabotage of plant defense by aphid saliva
-
Will, T., Tjallingii, W. F., Thonnessen, A., and van Bel, A. J. E. 2007. Molecular sabotage of plant defense by aphid saliva. Proc. Natl. Acad. Sci. U.S.A. 104:10536-10541.
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 10536-10541
-
-
Will, T.1
Tjallingii, W.F.2
Thonnessen, A.3
Van Bel, A.J.E.4
-
38
-
-
70349685424
-
Aphid watery saliva counteracts sieve-tube occlusion: A universal phenomenon?
-
Will, T., Kornemann, S. R., Furch, A. C., Tjallingii, W. F., and van Bel, A. J. 2009. Aphid watery saliva counteracts sieve-tube occlusion: A universal phenomenon? J. Exp. Biol. 212:3305-3312.
-
(2009)
J. Exp. Biol.
, vol.212
, pp. 3305-3312
-
-
Will, T.1
Kornemann, S.R.2
Furch, A.C.3
Tjallingii, W.F.4
Van Bel, A.J.5
-
39
-
-
42549146892
-
Adaptive evolution has targeted the c-terminal domain of the rxlr effectors of plant pathogenic oomycetes
-
Win, J., and Kamoun, S. 2008. Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetes. Plant Signal. Behav. 3:251-253.
-
(2008)
Plant Signal. Behav.
, vol.3
, pp. 251-253
-
-
Win, J.1
Kamoun, S.2
-
40
-
-
84871027327
-
Adaptive evolution has targeted the c-terminal domain of the rxlr effectors of plant pathogenic oomycetes. Plant cell 19:2349-2369p yang, z., and bielawski, j. P. 2000. Statistical methods for detecting molecular adaptation
-
Win, J., Morgan, W., Bos, J., Krasileva, K. V., Cano, L. M., Chaparro-Garcia, A., Ammar, R., Staskawicz, B. J., and Kamoun, S. 2007. Adaptive evolution has targeted the C-terminal domain of the RXLR effectors of plant pathogenic oomycetes. Plant Cell 19:2349-2369p Yang, Z., and Bielawski, J. P. 2000. Statistical methods for detecting molecular adaptation. Trends Ecol. Evol. 15:496-503.
-
(2007)
Trends Ecol. Evol.
, vol.15
, pp. 496-503
-
-
Win, J.1
Morgan, W.2
Bos, J.3
Krasileva, K.V.4
Cano, L.M.5
Chaparro-Garcia, A.6
Ammar, R.7
Staskawicz, B.J.8
Kamoun, S.9
|