High-resolution deep sequencing reveals biodiversity, population structure, and persistence of HIV-1 quasispecies within host ecosystems

Retrovirology

Volumn 9, Issue , 2012, Pages

  Yin, Li ^a   Liu, Li ^b   Sun, Yijun ^b   Hou, Wei ^a   Lowe, Amanda C ^a   Gardner, Brent P ^a   Salemi, Marco ^a   Williams, Wilton B ^a   Farmerie, William G ^b   Sleasman, John W ^c   Goodenow, Maureen M ^a  

^a UNIVERSITY OF FLORIDA COLLEGE OF MEDICINE   (United States)

^b UNIVERSITY OF FLORIDA   (United States)

^c UNIVERSITY OF SOUTH FLORIDA   (United States)

Author keywords

Biodiversity; Fitness; Founder virus persistence; HIV 1 envelope V3; Most recent common ancestor; Population structure; Pyrosequencing; Quasispecies

Indexed keywords

ARTICLE; BIOINFORMATICS; CLONAL EVOLUTION; CONTROLLED STUDY; GENE CLUSTER; GENETIC ALGORITHM; GENETIC DISTANCE; GENETIC VARIABILITY; HUMAN; HUMAN CELL; HUMAN IMMUNODEFICIENCY VIRUS 1; LAST COMMON ANCESTOR; MOLECULAR DYNAMICS; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; NONHUMAN; PERIPHERAL BLOOD MONONUCLEAR CELL; POPULATION STRUCTURE; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; SPECIES DIVERSITY; VIRUS CELL INTERACTION; VIRUS ENVELOPE; VIRUS IDENTIFICATION;

CLUSTER ANALYSIS; EVOLUTION, MOLECULAR; GENETIC VARIATION; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HIV ENVELOPE PROTEIN GP120; HIV INFECTIONS; HIV-1; HUMANS; LEUKOCYTES, MONONUCLEAR;

ANIMALIA; HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 84870976695     PISSN: None     EISSN: 17424690     Source Type: Journal    
DOI: 10.1186/1742-4690-9-108     Document Type: Article

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