Collection of Biological Samples for DNA Analysis

Genetic Analysis of Complex Diseases: Second Edition

Volumn , Issue , 2005, Pages 153-166

  Vance, Jeffery M ^a  

^a DUKE UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

DNA extraction and processing; DNA sample collection; Sample management

Indexed keywords

EID: 84870950277     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9780471781141.ch5     Document Type: Chapter

References (33)

1. Ben Othmane K, Ben Hamida M, Pericak-Vance MA, Ben Hamida C, Blel S, Carter SC, Bowcock AM, Petruhkin K, Gilliam TC, Roses AD, Hentati F, Vance JM (1992): Linkage of Tunisian autosomal recessive Duchenne-like muscular dystrophy to the pericentromeric region of chromosome 13q. Nat Genet 2:315-317.
2. Carducci C, Ellul L, Antonozzi I, Pontecorvi A (1992): DNA elution and amplification by polymerase chain reaction from dried blood spots. BioTechniques 13:735-737.
3. Chomczynski P (1993): A reagent for the single-step simultaneous isolation of RNA, DNA and proteins from cell and tissue samples. BioTechniques 15:532-536.
4. Clayton EW, Steinberg KK, Khoury MJ, Thomson E, Andrews L, Kahn MJ, Kopelman LM, Weiss JO (1995): Informed consent for genetic research on stored tissue samples. JAMA 274:1786-1792.
5. Dean FB, et al (2002): Comprehensive human genome amplification using multiple displacement amplification Proc Natl Acad Sci USA 99:5261-5266.
6. Del Rio SA, Marino MA, Belgrader P (1996): Reusing the same bloodstained punch for sequential DNA amplifications and typing. BioTechniques 20:970-974.
7. De Souza AT, Hankins GR, Washington MK, Fine RL, Orton TC, Jirtle RL (1995): Frequent loss of heterozygosity on 6q at the mannose 6-phosphate/insulin-like growth factor II receptor locus in human hepatocellular tumors. Oncogene 10:1725-1729.
8. Doyle A (1990): Establishment of lymphoblastoid cell lines. In: Pollard JW, Walker JM, eds. Animal Cell Culture, Methods in Molecular Biology. Totowa, NJ: Humana.
9. Fishbein WN, Foellmer JW, Davis JI, Kirsch IR (1995): Detection of very-rare-copy DNA in 0.2 mL dried human blood blots. Biochem Mol Med 56:152-157.
10. Foley KP, Leonard MW, Engel JD (1993): Quantitation of RNA using the polymerase chain reaction. Trends Genet 9:380-385.
11. Greer CE, Lund JK, Manos MM (1991): PCR amplification from paraffin-embedded tissues: Recommendations on fixatives for long-term storage and prospective studies. PCR Methods Appl 1:46-50.
12. Gustafson S, Proper J, Bowie EJW, Sommer SS (1987): Parameters affecting the yield of DNA from human blood. Anal Chem 165:294-299.
13. Guthrie R, Susi A (1963): A simple phenylalanine method for detecting phenylketonuria in large populations of newborn infants. Pediatrics 32:338-343.
14. Johns MB, Paulus-Thomas JE (1989): Purification of human genomic DNA from whole blood using sodium perchlorate in place of phenol. Anal Biochem 180:276-278.
15. Kawasaki ES (1990): Sample preparation from blood, cells, and other fluids. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR Protocols: A Guide to Methods and Applications. San Diego, CA: Academic, pp 146-152.
16. Kirby LT (1990): DNA Fingerprinting: An Introduction. New York: Stockton, pp 51-74.
17. Kosel S, Graeber MB (1994): Use of neuropathological tissue for molecular genetic studies: Parameters affecting DNA extraction and polymerase chain reaction. Acta Neuropathol (Berlin) 88:19-25.
18. Louie LG, King M-C (1991): A novel approach to establishing permanent lymphoblastoid cell lines: Epstein-Barr virus transformation of cryopreserved lymphocytes. Am J Hum Genet 48:637-638.
19. Manchester KL (1995): Value of A260/A280 ratios for measurement of purity of nucleic acids. BioTechniques 19:208-209.
20. Marshall E (1996): Policy on DNA research troubles tissue bankers. Science 271:440.
21. Matsubara Y, Ikeda H, Endo H, Narisawa K (1992): Dried blood spot on filter paper as a source of mRNA. Nucleic Acids Res 20:1998.
22. McCabe ERB (1991): Utility of PCR for DNA analysis from dried blood spots on filter paper blotters. PCR Methods Appl 1:99-106.
23. Miller SA, Dykes DD, Polesky HF (1988): A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res 16:1215.
24. Noguchi S, McNally EM, Ben Othmane K, Hagiwara Y, Mizuno Y, Yoshida M, Yamamoto H, Carsten G, Bönnemann CG, Gussoni E, Denton PH, Kyriakides T, Middleton L, Hentati F, Ben Hamida M, Nonaka I, Vance JM, Kunkel LM, Ozawa E (1995): Mutations in the dystrophin-associated protein (g-sarcoglycan in chromosome 13 muscular dystrophy. Science 270:819-822.
25. Planelles D, Llopis F, Puig N, Montoro JA (1996): A new, fast and simple DNA extraction method for HLA and VNTR genotyping by PCR amplification. J Clin Lab Anal 10:125-128.
26. Pressman S, Rotter JI (1991): Epstein-Barr virus transformation of cryopreserved lymphocytes: Prolonged experience with technique. Am J Hum Genet 49:467.
27. Raskin S, Phillips JA 3rd, Krishnamani MR, Vnencak-Jones C, Parker RA, Rozov T, Cardieri JM, Marostica P, Abreu F, Giugliani R (1993): DNA analysis of cystic fibrosis in Brazil by direct PCR amplification from Guthrie cards. Am J Med Genet 46:665-669.
28. Richards B, Skoletsky J, Shuber AP, Balfour R, Stern RC, Dorkin HL, Parad RB, Witt D, Klinger KW (1994): Multiplex PCR amplification from the CFTR gene using DNA prepared from buccal brushes/swabs. Hum Mol Genet 2:159-163.
29. Smith CL, Klco SR, Cantor CR (1988): Pulsed-field gel electrophoresis and the technology of large DNA molecules. In: Davies K, ed. Genome Analysis: A Practical Approach. Oxford, England: IRL.
30. Smith LJR, Braylan RC, Nutkis JE, Edmundson KB, Downing JR, Wakeland EK (1987): Extraction of cellular DNA from human cells and tissues fixed in ethanol. Anal Biochem 160:135-138.
31. Telenius H, et al (1992): Degenerate oligonucleotide-primed PCR: General amplification of target DNA by a single degenerate primer. Genomics 13:718-725.
32. Yates JRW, Malcolm S, Read AP (1989): Guidelines for DNA banking. Report of the Clinical Genetics Society working party on DNA banking. J Med Genet 26:245-250.
33. Zhang L, et al (1992): Whole genome amplification from a single cell: Implication for genetic analysis. Proc Natl Acad Sci USA 89:5847-5851.