Estimation of Leaf Area Index and Plant Area Index of a Submerged Macrophyte Canopy Using Digital Photography

PLoS ONE

Volumn 7, Issue 12, 2012, Pages

  Zhao, Dehua ^a   Xie, Dong ^a   Zhou, Hengjie ^a   Jiang, Hao ^a   An, Shuqing ^a  

^a NANJING UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AQUATIC ENVIRONMENT; ARTICLE; CANOPY; CHINA; CONTROLLED STUDY; ECOSYSTEM; IMAGE ANALYSIS; IMAGE PROCESSING; LEAF AREA; MACROPHYTE; NONHUMAN; PHOTOGRAPHY; PLANT AREA INDEX; PLANT PARAMETERS; POTAMOGETON MALAINUS; POTAMOGETONACEAE; QUANTITATIVE ANALYSIS; TURBIDITY; VEGETATION;

AQUATIC ORGANISMS; NEPHELOMETRY AND TURBIDIMETRY; PHOTOGRAPHY; PLANT LEAVES; POTAMOGETONACEAE; WATER;

POTAMOGETON;

EID: 84870736137     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0051034     Document Type: Article

References (42)

1. Chen JM, Black TA, (1992) Defining leaf area index for non-flat leaves. Plant Cell Environ 15: 421-429.
2. Bréda NJJ, (2003) Ground-based measurements of leaf area index: a review of methods, instruments and current controversies. J Exp Bot 54: 2403-2417.
3. Chen JM, Plummer PS, Rich M, Gower ST, Norman JM (1997) Leaf area index measurements. J Geophys Res 102: 29,429-429,443.
4. Morisette JT, Baret F, Privette JL, Myneni RB, Nickeson JE, et al. (2006) Validation of global moderate-resolution LAI products: A framework proposed within the CEOS land product validation subgroup. Geoscience and Remote Sensing, IEEE Transactions on 44: 1804-1817.
5. Jonckheere I, Fleck S, Nackaerts K, Muys B, Coppin P, et al. (2004) Review of methods for in situ leaf area index determination: Part I. Theories, sensors and hemispherical photography. Agr Forest Meteorol 121: 19-35.
6. Vojtech E, Turnbull LA, Hector A, (2007) Differences in light interception in grass monocultures predict short-term competitive outcomes under productive conditions. PloS one 2: e499.
7. Garrigues S, Shabanov N, Swanson K, Morisette J, Baret F, et al. (2008) Intercomparison and sensitivity analysis of Leaf Area Index retrievals from LAI-2000, AccuPAR, and digital hemispherical photography over croplands. Agr Forest Meteorol 148: 1193-1209.
8. Lang A, (1986) Leaf-area and average leaf angle from transmission of direct sunlight. Aust J Bot 34: 349-355.
9. Nackaerts K, Coppin P, Muys B, Hermy M, (2000) Sampling methodology for LAI measurements with LAI-2000 in small forest stands. Agr Forest Meteorol 101: 247-250.
10. Demarez V, Duthoit S, Baret F, Weiss M, Dedieu G, (2008) Estimation of leaf area and clumping indexes of crops with hemispherical photographs. Agr Forest Meteorol 148: 644-655.
11. Liu Z, Jin G, Qi Y, (2012) Estimate of leaf area index in an old-growth mixed broadleaved-Korean Pine Forest in Northeastern China. PloS one 7: e32155.
12. Weiss M, Baret F, Smith G, Jonckheere I, Coppin P, (2004) Review of methods for in situ leaf area index (LAI) determination: Part II. Estimation of LAI, errors and sampling. Agr Forest Meteorol 121: 37-53.
13. Liu J, Pattey E, (2010) Retrieval of leaf area index from top-of-canopy digital photography over agricultural crops. Agr Forest Meteorol 150: 1485-1490.
14. Baret F, de Solan B, Lopez-Lozano R, Ma K, Weiss M, (2010) GAI estimates of row crops from downward looking digital photos taken perpendicular to rows at 57.5° zenith angle: Theoretical considerations based on 3D architecture models and application to wheat crops. Agr Forest Meteorol 150: 1393-1401.
15. Graham EA, Yuen EM, Robertson GF, Kaiser WJ, Hamilton MP, et al. (2009) Budburst and leaf area expansion measured with a novel mobile camera system and simple color thresholding. Environ Exp Bot 65: 238-244.
16. Macfarlane C, Hoffman M, Eamus D, Kerp N, Higginson S, et al. (2007) Estimation of leaf area index in eucalypt forest using digital photography. Agr Forest Meteorol 143: 176-188.
17. Sakamoto T, Gitelson AA, Nguy-Robertson AL, Arkebauer TJ, Wardlow BD, et al. (2012) An alternative method using digital cameras for continuous monitoring of crop status. Agr Forest Meteorol 154: 113-126.
18. Armitage JM, Franco A, Gomez S, Cousins IT, (2008) Modeling the Potential Influence of Particle Deposition on the Accumulation of Organic Contaminants by Submerged Aquatic Vegetation. Environ Sci Technol 42: 4052-4059.
19. Franklin P, Dunbar M, Whitehead P, (2008) Flow controls on lowland river macrophytes: a review. Sci Tot Environ 400: 369-378.
20. van der Heide T, van Nes EH, van Katwijk MM, Olff H, Smolders AJP, (2011) Positive feedbacks in seagrass ecosystems-Evidence from large-scale empirical data. PloS one 6: e16504.
21. Dierssen HM, Zimmerman RC, Leathers RA, Downes TV, Davis CO (2003) Ocean color remote sensing of seagrass and bathymetry in the Bahamas Banks by high-resolution airborne imagery. Limnol Oceanogr: 444-455.
22. Yang C, Yang D, Cao W, Zhao J, Wang G, et al. (2010) Analysis of seagrass reflectivity by using a water column correction algorithm. Int J Remote Sens 31: 4595-4608.
23. Yang D, Yang C, (2009) Detection of seagrass distribution changes from 1991 to 2006 in Xincun Bay, Hainan, with satellite remote sensing. Sensors 9: 830-844.
24. Nfon E, Armitage JM, Cousins IT, (2011) Development of a dynamic model for estimating the food web transfer of chemicals in small aquatic ecosystems. Sci Tot Environ 409: 5416-5422.
25. Pope RM, Fry ES, (1997) Absorption spectrum (380-700 nm) of pure water. II. Integrating cavity measurements. Appl Optics 36: 8710-8723.
26. Babin M, Stramski D, Ferrari GM, Claustre H, Bricaud A, et al. (2003) Variations in the light absorption coefficients of phytoplankton, nonalgal particles, and dissolved organic matter in coastal waters around Europe. J Geophys Res 108: 37-39.
27. Bowers D, Binding C, (2006) The optical properties of mineral suspended particles: A review and synthesis. Estuar Coast Shelf Sci 67: 219-230.
28. Doxaran D, Ruddick K, McKee D, Gentili B, Tailliez D, et al. (2009) Spectral variations of light scattering by marine particles in coastal waters, from visible to near infrared. Limnol Oceanogr 54: 1257.
29. Liu W, Hu W, Chen Y, Gu X, Hu Z, et al. (2007) Temporal and spatial variation of aquatic macrophytes in West Taihu Lake. Acta Ecol Sinica 27: 0159-0170.
30. Cheng X, Li S, (2006) An analysis on the evolvement processes of lake eutrophication and their characteristics of the typical lakes in the middle and lower reaches of Yangtze River. Chinese Sci Bull 51: 1603-1613.
31. Zhang Y, Chen JM, Miller JR, (2005) Determining digital hemispherical photograph exposure for leaf area index estimation. Agr Forest Meteorol 133: 166-181.
32. Brisson J, Chazarenc F, (2009) Maximizing pollutant removal in constructed wetlands: Should we pay more attention to macrophyte species selection? Sci Tot Environ 407: 3923-3930.
33. Blindow I, Andersson G, Hargeby A, Johansson S, (1993) Long-term pattern of alternative stable states in two shallow eutrophic lakes. Freshwater Biol 30: 159-167.
34. Dierberg F, DeBusk T, Jackson S, Chimney M, Pietro K, (2002) Submerged aquatic vegetation-based treatment wetlands for removing phosphorus from agricultural runoff: response to hydraulic and nutrient loading. Water Res 36: 1409-1422.
35. Knight RL, Gu B, Clarke RA, Newman JM, (2003) Long-term phosphorus removal in Florida aquatic systems dominated by submerged aquatic vegetation. Ecol Eng 20: 45-63.
36. Livingston RJ, McGlynn SE, Niu X, (1998) Factors controlling seagrass growth in a gulf coastal system: Water and sediment quality and light. Aquat Bot 60: 135-159.
37. Rosqvist K, Mattila J, Sandström A, Snickars M, Westerbom M, (2010) Regime shifts in vegetation composition of Baltic Sea coastal lagoons. Aquat Bot 93: 39-46.
38. Camargo JA, Gonzalo C, Alonso Á, (2011) Assessing trout farm pollution by biological metrics and indices based on aquatic macrophytes and benthic macroinvertebrates: A case study. Ecol Indic 11: 911-917.
39. La Peyre MK, Gordon J, (2012) Nekton density patterns and hurricane recovery in submerged aquatic vegetation, and along non-vegetated natural and created edge habitats. Estuar Coast Shelf Sci 98: 108-118.
40. Wang Y, Jarvis P, (1988) Mean leaf angles for the ellipsoidal inclination angle distribution. Agr Forest Meteorol 43: 319-321.
41. Frédéric B, Marie W, (2008) Slope correction for LAI estimation from gap fraction measurements. Agr Forest Meteorol 148: 1553-1562.
42. Kuusk A, (1995) A fast, invertible canopy reflectance model. Remote Sens Environ 51: 342-350.