SSR map construction and quantitative trait loci (QTL) identification of major agronomic traits in mungbean (Vigna radiata (L.) Wilczek)

Sabrao Journal of Breeding and Genetics

Volumn 44, Issue 1, 2012, Pages 71-86

  Kajonphol, Tanaporn ^a   Sangsiri, Chontira ^b   Somta, Prakit ^a   Toojinda, Theerayut ^a   Srinives, Peerasak ^a  

^a KASETSART UNIVERSITY   (Thailand)

^b MAHIDOL UNIVERSITY   (Thailand)

Author keywords

Agronomic traits; Comparative genome mapping; Mungbean; Quantitative trait loci; Simple sequence repeat; Vigna radiata

Indexed keywords

VIGNA; VIGNA ANGULARIS; VIGNA MUNGO; VIGNA RADIATA; VIGNA RADIATA VAR. RADIATA; VIGNA RADIATA VAR. SUBLOBATA;

EID: 84870734745     PISSN: 10297073     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (38)

1. Arumganathan K, Earle ED (1991). Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 9: 208.
2. Blair M, Pedraza F, Buendia H, Gaitán-Solís E, Beebe S, Gepts P, Thome J (2003). Development of a genome-wide anchored microsatellite map of common bean (Phaseolus vulgaris L.). Theor. Appl. Genet. 107: 1362-1374.
3. Buso G, Amaral Z, Brondani R, Ferreira M (2006). Microsatellite markers for the common bean Phaseolus vulgaris. Mol. Ecol. Notes 6: 252-254.
4. Chaitieng B, Kaga A, Tomooka N, Isemura T, Kuroda Y, Vaughan D (2006). Development of a black gram [Vigna mungo (L.) Hepper] linkage map and its comparison with an azuki bean [Vigna angularis (Willd.) Ohwi and Ohashi] linkage map. Theor. Appl. Genet. 113: 1261-1269.
5. Chankaew S, Somta P, Sorajjapinum W, Srinives P (2011). Quantitative trait loci mapping of Cercospora leaf spot resistance in mungbean, Vigna radiata (L.) Wilczek. Mol. Breed. 28: 255-264.
6. Churchill GA, Doerge RW (1994). Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971.
7. Fehr W (1987). Principles of Cultivar Development, vol. 1. Theory and Technique. McGraw-Hill Inc, New York.
8. Fehr W, Caviness C, Burmood D, Pennington J (1971). Stage of development descriptions for soybeans, Glycine max (L.) Merrill. Crop Sci. 11: 929-931.
9. Fernandez G, Shanmugasundaram S (1988). The AVRDC mungbean improvement program: The past, present and future. In S. Shanmugasundaram and B.T. McLean, eds., Mungbean: Proceeding of the Second International Symposium. AVRDC, Shanhua, Taiwan, pp. 58-70.
10. Gwag J, Chung J, Chung H, Lee J, Ma K, Dixit A, Park Y, Cho E, Kim T, Lee S (2006). Characterization of new microsatellite markers in mungbean, Vigna radiata (L.). Mol. Ecol. Notes 6: 1132-1134.
11. Han OK, Kaga A, Isemura T, Wang X, Tomooka N, Vaughan DA (2005). A genetic linkage map for azuki bean (Vigna angularis (Willd.) Ohwi & Ohashi). Theor. Appl. Genet. 111: 1278-1287.
12. Humphry ME, Konduri V, Lambrides CJ, Magner T, McIntyre CL, Aiken EB, Liu CJ (2002). Development of a mungbean (Vigna radiata) RFLP linkage map and its comparison with lablab (Lablab purpureus) reveals a high level of colinearity between the two genomes. Theor. Appl. Genet. 105: 160-166.
13. Kasettranan W, Somta P, Srinives P (2010). Mapping of quantitative trait loci controlling powdery mildew resistance in mungbean, Vigna radiata (L.) Wilczek. J. Crop Sci. Biotech. 13(3): 155-161.
14. Khattak G, Srinives P, Kim D (1995). Yield partitioning in high yielding mungbean (Vigna radiata (L.) Wilczek). Kasetsart J. (Nat Sci) 29: 494-497.
15. Kosambi D (1944). The estimation of map distances from recombination values. Ann. Eugen. 12: 172-175.
16. Kumar S, Tan S, Quah S, Yusoff K (2002a). Isolation of microsatellite markers in mungbean, Vigna radiata. Mol. Ecol. Notes 2: 96-98.
17. Kumar S, Tan S, Quah S, Yusoff K (2002b). Isolation and characterization of seven tetranucleotide microsatellite loci in mungbean, Vigna radiata. Mol. Ecol. Notes 2: 293-295.
18. Lambrides CJ, Lawn RJ, Godwin ID, Manners J, Imrie BC (2000). Two genetic linkage maps of mungbean using RFLP and RAPD markers. Aust. J. Agric. Res. 51: 415-425.
19. Li C, Fatokun C, Ubi B, Singh B, Scoles G (2001). Determining genetic similarities and relationships among cowpea breeding lines and cultivars by microsatellite markers. Crop Sci. 41: 189-197.
20. Lodhi MA, Ye GN, Weeden NF, Reisch BI (1994). A simple and efficient method for DNA extraction from grapevine cultivars and Vitis species. Plant Mol. Biol. Rep. 12: 6-13.
21. Menancio-Hautea D, Kumar L, Danesh D, Young N (1992). A genome map for mungbean (Vigna radiata (L.) Wilczek) based on DNA genetic markers (2n=2x=22). In Genetic Maps Locus Maps of Complex Genomes. Edited by Stephen O'Brien. Cold Spring Habor Laboratory, pp. 6.259-6.261.
22. Pookpakdi A, Promkham V, Chuangpetchinda C, Pongkao S, Lairungrueng C, Tawornsuk C (1992). Growth stage identification in mungbean (Vigna radiata (L.) Wilczek). Kasetsart J. (Nat Sci) 26: 75-80.
23. 2 generation of green gram (Vigna radiata (L.) Wilczek). Madras Agri. J. 87: 590-593.
24. Rohman M, Hussain AI, Arifin S, Akhter Z, Hauzzaman M (2003). Genetic variability, correlation and path analysis in mungbean. Asian J. Plant. Sci. 2: 1209-1211.
25. Seehalak W, Somta P, Sommanas W, Srinives P (2009). Microsatellite markers for mungbean developed from sequence database. Mol. Ecol. Resour. 9: 862-864.
26. Siddique M, Faisal M, Malikand A, Awan S (2006). Genetic divergence, association and performance evaluation of different genotypes of mungbean (Vigna radiata). Int. J. Agri. Biol. 6: 793-795.
27. Somta P, Musch W, Kongsamai B, Chanprame S, Nakasathein S, Toojinda T, Sojjapinun W, Seehalak W, Tragoonrung S, Srinives P (2008). New microsatellite markers isolated from mungbean (Vigna radiata (L.) Wilczek). Mol. Ecol. Resour. 8: 1155-1157.
28. Somta P, Sommanas W, Srinives P (2009). Molecular diversity assessment of AVRDC-The World Vegetable Center elite-parental mungbeans. Breed. Sci. 59: 149-157.
29. Sriphadet S, Lambrides J, Srinives P (2007). Inheritance of agronomic traits and their interrelationship in mungbean (Vigna radiata (L.) Wilczek). J. Crop. Sci. Biotech. 10: 249-256.
30. Tangphatsornruang S, Somta P, Uthaipaisanwong P, Chanprasert J, Sangsrakru D, Seehalak W, Sommanas W, Tragoonrung S, Srinives P (2009). Characterization of microsatellites and gene contents from genome shotgun sequences of mungbean (Vigna radiata (L.) Wilczek). BMC Plant Biol. 9: 137.
31. Tomooka N, Vaughan D, Moss H, Maxted N (2002). The Asian Vigna: Genus Vigna subgenus Ceratotropis genetic resources. Kluwer Academic Publishers, Dordrecht.
32. Van Ooijen J (2009). JoinMap®3.0, software for the calculation of genetic linkage maps. Plant Research International, Wageningen, Netherlands.
33. Wang X, Kaga A, Tomooka N, Vaughan DA (2004). The development of SSR markers by new method in plants and their application to gene flow studies in azuki bean (Vigna angularis (Willd.) Ohwi & Ohashi). Theor. Appl. Genet. 109: 352-360.
34. Wang S, Basten CJ, Zeng Z-B (2007). Windows QTL Cartographer 2.5. Department of Statistics, North Carolina State University, Raleigh, NC.
35. Weinberger K (2003). Impact analysis on mungbean research in South and Southeast Asia. Final Report GTZ Eigenmassnahme no. 99.9117.5. AVRDC, Shanhua, Taiwan.
36. Young N, Kumar L, Menancio-Hautea D, Danesh D, Talekar N, Shanmugasundarum S, Kim D (1992). RFLP mapping of a major bruchid resistance gene in mungbean (Vigna radiata (L.) Wilczek). Theor. Appl. Genet. 84: 839-844.
37. Young N, Danesh D, Menancio-Hautea D, Kumar L (1993). Mapping oligogenic resistance to powdery mildew in mungbean with RFLPs. Theor. Appl. Genet. 87: 243-249.
38. Zhao D, Cheng X, Wang L, Wang S, Ma YL (2010). Constructing of mungbean genetic linkage map. Acta Agron. Sin. 36(6): 932-939.