메뉴 건너뛰기




Volumn 194, Issue 24, 2012, Pages 6993-6994

Genome sequence of the pathogenic Herbaspirillum seropedicae strain Os34, isolated from rice roots

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENOME; BACTERIUM ISOLATION; HERBASPIRILLUM; HERBASPIRILLUM SEROPEDICAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RICE; SEQUENCE ANALYSIS; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM PLANT INTERACTION; COMPARATIVE GENOMIC HYBRIDIZATION; DNA EXTRACTION; GENE SEQUENCE; GENOME ANALYSIS; HERBASPIRILLUM SEROPEDICAE OS45; OPEN READING FRAME; OPERON; PLANT ROOT; POLYMERASE CHAIN REACTION;

EID: 84870711662     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01934-12     Document Type: Article
Times cited : (14)

References (16)
  • 1
    • 0022629490 scopus 로고
    • Characterization of Herbaspirillum seropedicae gen. nov., sp. nov., a root-associated nitrogen-fixing bacterium
    • Baldani JI, Baldani VLD, Seldin L, Döbereiner J. 1986. Characterization of Herbaspirillum seropedicae gen. nov., sp. nov., a root-associated nitrogen-fixing bacterium. Int. J. Syst. Bacteriol. 36:86-93.
    • (1986) Int. J. Syst. Bacteriol. , vol.36 , pp. 86-93
    • Baldani, J.I.1    Baldani, V.L.D.2    Seldin, L.3    Döbereiner, J.4
  • 3
    • 84862591603 scopus 로고    scopus 로고
    • Toward almost closed genomes with GapFiller
    • doi:10.1186/gb-2012-13-6-r56
    • Boetzer M, Pirovano W. 2012. Toward almost closed genomes with GapFiller. Genome Biol. 13:R56. doi:10.1186/gb-2012-13-6-r56.
    • (2012) Genome Biol , vol.13
    • Boetzer, M.1    Pirovano, W.2
  • 4
    • 0036221981 scopus 로고    scopus 로고
    • Herbaspirillum colonization increases growth and nitrogen accumulation in aluminiumtolerant rice varieties
    • Gyaneshwar P, James EK, Reddy PM, Ladha JK. 2002. Herbaspirillum colonization increases growth and nitrogen accumulation in aluminiumtolerant rice varieties. New Phytol. 154:131-145.
    • (2002) New Phytol , vol.154 , pp. 131-145
    • Gyaneshwar, P.1    James, E.K.2    Reddy, P.M.3    Ladha, J.K.4
  • 5
    • 77952299957 scopus 로고    scopus 로고
    • Prodigal: prokaryotic gene recognition and translation initiation site identification
    • doi:10.1186/1471-2105-11-119
    • Hyatt D, et al. 2010. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinform. 11:119. doi:10.1186/1471-2105-11-119.
    • (2010) BMC Bioinform , vol.11 , pp. 119
    • Hyatt, D.1
  • 6
    • 0030956751 scopus 로고    scopus 로고
    • Herbaspirillum, an endophytic diazotroph colonizing vascular tissue in leaves of Sorghum bicolor L. Moench
    • James E, Olivares F, Baldani J, Döbereiner J. 1997. Herbaspirillum, an endophytic diazotroph colonizing vascular tissue in leaves of Sorghum bicolor L. Moench. J. Exp. Bot. 48:785-798.
    • (1997) J. Exp. Bot. , vol.48 , pp. 785-798
    • James, E.1    Olivares, F.2    Baldani, J.3    Döbereiner, J.4
  • 7
    • 0036748509 scopus 로고    scopus 로고
    • Infection and colonization of rice seedlings by the plant growth-promoting bacterium Herbaspirillum seropedicae Z67
    • James EK, et al. 2002. Infection and colonization of rice seedlings by the plant growth-promoting bacterium Herbaspirillum seropedicae Z67. Mol. Plant Microbe Interact. 15:894-906.
    • (2002) Mol. Plant Microbe Interact. , vol.15 , pp. 894-906
    • James, E.K.1
  • 9
    • 79960112061 scopus 로고    scopus 로고
    • A colorimetric assay of 1-aminocyclopropane-1-carboxylate (ACC) based on ninhydrin reaction for rapid screening of bacteria containing ACC deaminase
    • Li Z, Chang S, Lin L, Li Y, An Q. 2011. A colorimetric assay of 1-aminocyclopropane-1-carboxylate (ACC) based on ninhydrin reaction for rapid screening of bacteria containing ACC deaminase. Lett. Appl. Microbiol.53:178-185.
    • (2011) Lett. Appl. Microbiol. , vol.53 , pp. 178-185
    • Li, Z.1    Chang, S.2    Lin, L.3    Li, Y.4    An, Q.5
  • 10
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 11
    • 0037561991 scopus 로고    scopus 로고
    • GenDB-an open source genome annotation system for prokaryote genomes
    • Meyer F, et al. 2003. GenDB-an open source genome annotation system for prokaryote genomes. Nucleic Acids Res. 31:2187-2195.
    • (2003) Nucleic Acids Res , vol.31 , pp. 2187-2195
    • Meyer, F.1
  • 12
    • 84862667110 scopus 로고    scopus 로고
    • Herbaspirillum-plant interactions: microscopical, histological and molecular aspects
    • Monteiro RA, et al. 2012. Herbaspirillum-plant interactions: microscopical, histological and molecular aspects. Plant Soil 356:175-196.
    • (2012) Plant Soil , vol.356 , pp. 175-196
    • Monteiro, R.A.1
  • 13
    • 85047679434 scopus 로고    scopus 로고
    • Occurrence of the endophytic diazotrophs Herbaspirillum spp. in roots, stems, and leaves, predominantly of Gramineae
    • Olivares FL, Baldani VLD, Reis VM, Baldani JI, Döbereiner J. 1996.Occurrence of the endophytic diazotrophs Herbaspirillum spp. in roots, stems, and leaves, predominantly of Gramineae. Biol. Fertil. Soils 21:197-200.
    • (1996) Biol. Fertil. Soils , vol.21 , pp. 197-200
    • Olivares, F.L.1    Baldani, V.L.D.2    Reis, V.M.3    Baldani, J.I.4    Döbereiner, J.5
  • 14
    • 79957974830 scopus 로고    scopus 로고
    • Genome of Herbaspirillum seropedicae strain SmR1, a specialized diazotrophic endophyte of tropical grasses
    • doi:10.1371/journal.pgen.1002064
    • Pedrosa FO, et al. 2011. Genome of Herbaspirillum seropedicae strain SmR1, a specialized diazotrophic endophyte of tropical grasses. PLoS Genet. 7:e1002064. doi:10.1371/journal.pgen.1002064.
    • (2011) PLoS Genet , vol.7
    • Pedrosa, F.O.1
  • 15
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E. 2008. Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 16
    • 84870711662 scopus 로고    scopus 로고
    • Genome sequence of the pathogenic Herbaspirillum seropedicae strain Os45, isolated from rice roots
    • Zhu B, et al. 2012. Genome sequence of the pathogenic Herbaspirillum seropedicae strain Os45, isolated from rice roots. J. Bacteriol. 194:6995-6996.
    • (2012) J. Bacteriol. , vol.194 , pp. 6995-6996
    • Zhu, B.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.