BASIC PENTACYSTEINE proteins mediate MADS domain complex binding to the DNA for Tissue-Specific expression of target genes in Arabidopsis

Plant Cell

Volumn 24, Issue 10, 2012, Pages 4163-4172

  Simonini, Sara ^a   Roig Villanova, Irma ^a   Gregis, Veronica ^a   Colombo, Bilitis ^a   Colombo, Lucia ^a   Kater, Martin M ^a  

^a UNIVERSITY OF MILAN   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84870705251     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.112.103952     Document Type: Article

References (33)

1. Berger, N., and Dubreucq, B. (2012). Evolution goes GAGA: GAGA binding proteins across kingdoms. Biochim. Biophys. Acta 1819: 863-868.
2. Botas, J. (1993). Control of morphogenesis and differentiation by HOM/Hox genes. Curr. Opin. Cell Biol. 5: 1015-1022.
3. Bowman, J.L., Drews, G.N., and Meyerowitz, E.M. (1991). Expression of the Arabidopsis floral homeotic gene AGAMOUS is restricted to specific cell types late in flower development. Plant Cell 3: 749-758.
4. Brambilla, V., Battaglia, R., Colombo, M., Masiero, S., Bencivenga, S., Kater, M.M., and Colombo, L. (2007). Genetic and molecular interactions between BELL1 and MADS box factors support ovule development in Arabidopsis. Plant Cell 19: 2544-2556.
5. Clough, S.J., and Bent, A.F. (1998). Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16: 735-743.
6. Dreni, L., Jacchia, S., Fornara, F., Fornari, M., Ouwerkerk, P.B., An, G., Colombo, L., and Kater, M.M. (2007). The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice. Plant J. 52: 690-699.
7. Dreni, L., Pilatone, A., Yun, D., Erreni, S., Pajoro, A., Caporali, E., Zhang, D., and Kater, M.M. (2011). Functional analysis of all AGAMOUS subfamily members in rice reveals their roles in reproductive organ identity determination and meristem determinacy. Plant Cell 23: 2850-2863.
8. Egea-Cortines, M., Saedler, H., and Sommer, H. (1999). Ternary complex formation between the MADS-box proteins SQUAMOSA, DEFICIENS and GLOBOSA is involved in the control of floral architecture in Antirrhinum majus. EMBO J. 18: 5370-5379.
9. Ferrando, A., Koncz-Kálmán, Z., Farràs, R., Tiburcio, A., Schell, J., and Koncz, C. (2001). Detection of in vivo protein interactions between Snf1-related kinase subunits with intron-tagged epitopelabelling in plants cells. Nucleic Acids Res. 29: 3685-3693.
10. Finzi, L., and Dunlap, D. (2003). Single-molecule studies of DNA architectural changes induced by regulatory proteins. Methods Enzymol. 370: 369-378.
11. Graba, Y., Aragnol, D., and Pradel, J. (1997). Drosophila Hox complex downstream targets and the function of homeotic genes. Bioessays 19: 379-388.
12. Grandi, V., Gregis, V., and Kater, M.M. (2011). Uncovering genetic and molecular interactions among floral meristem identity genes in Arabidopsis thaliana. Plant J. 69: 881-893.
13. Gregis, V., Sessa, A., Colombo, L., and Kater, M.M. (2006). AGL24, SHORT VEGETATIVE PHASE, and APETALA1 redundantly control AGAMOUS during early stages of flower development in Arabidopsis. Plant Cell 18: 1373-1382.
14. Gregis, V., Sessa, A., Colombo, L., and Kater, M.M. (2008). AGAMOUS-LIKE24 and SHORT VEGETATIVE PHASE determine floral meristem identity in Arabidopsis. Plant J. 56: 891-902.
15. Gregis, V., Sessa, A., Dorca-Fornell, C., and Kater, M.M. (2009). The Arabidopsis floral meristem identity genes AP1, AGL24 and SVP directly repress class B and C floral homeotic genes. Plant J. 60: 626-637.
16. Hartmann, U., Höhmann, S., Nettesheim, K., Wisman, E., Saedler, H., and Huijser, P. (2000). Molecular cloning of SVP: A negative regulator of the floral transition in Arabidopsis. Plant J. 21: 351-360.
17. Horard, B., Tatout, C., Poux, S., and Pirrotta, V. (2000). Structure of a polycomb response element and in vitro binding of polycomb group complexes containing GAGA factor. Mol. Cell. Biol. 20: 3187-3197.
18. Kaufmann, K., Muiño, J.M., Jauregui, R., Airoldi, C.A., Smaczniak, C., Krajewski, P., and Angenent, G.C. (2009). Target genes of the MADS transcription factor SEPALLATA3: Integration of developmental and hormonal pathways in the Arabidopsis flower. PLoS Biol. 7: e1000090.
19. Kooiker, M., Airoldi, C.A., Losa, A., Manzotti, P.S., Finzi, L., Kater, M.M., and Colombo, L. (2005). BASIC PENTACYSTEINE1, a GA binding protein that induces conformational changes in the regulatory region of the homeotic Arabidopsis gene SEEDSTICK. Plant Cell 17: 722-729.
20. Lehmann, M. (2004). Anything else but GAGA: A nonhistone protein complex reshapes chromatin structure. Trends Genet. 20: 15-22.
21. Liljegren, S.J., Ditta, G.S., Eshed, Y., Savidge, B., Bowman, J.L., and Yanofsky, M.F. (2000). SHATTERPROOF MADS-box genes control seed dispersal in Arabidopsis. Nature 404: 766-770.
22. Meister, R.J., Williams, L.A., Monfared, M.M., Gallagher, T.L., Kraft, E.A., Nelson, C.G., and Gasser, C.S. (2004). Definition and interactions of a positive regulatory element of the Arabidopsis INNER NO OUTER promoter. Plant J. 37: 426-438.
23. Monfared, M.M., Simon, M.K., Meister, R.J., Roig-Villanova, I., Kooiker, M., Colombo, L., Fletcher, J.C., and Gasser, C.S. (2011). Overlapping and antagonistic activities of BASIC PENTACYSTEINE genes affect a range of developmental processes in Arabidopsis. Plant J. 66: 1020-1031.
24. Orphanides, G., LeRoy, G., Chang, C.H., Luse, D.S., and Reinberg, D. (1998). FACT, a factor that facilitates transcript elongation through nucleosomes. Cell 92: 105-116.
25. Pinyopich, A., Ditta, G.S., Savidge, B., Liljegren, S.J., Baumann, E., Wisman, E., and Yanofsky, M.F. (2003). Assessing the redundancy of MADS-box genes during carpel and ovule development. Nature 424: 85-88.
26. Poux, S., Melfi, R., and Pirrotta, V. (2001). Establishment of Polycomb silencing requires a transient interaction between PC and ESC. Genes Dev. 15: 2509-2514.
27. Rounsley, S.D., Ditta, G.S., and Yanofsky, M.F. (1995). Diverse roles for MADS box genes in Arabidopsis development. Plant Cell 7: 1259-1269.
28. Sangwan, I., and O'Brian, M.R. (2002). Identification of a soybean protein that interacts with GAGA element dinucleotide repeat DNA. Plant Physiol. 129: 1788-1794.
29. Santi, L., Wang, Y., Stile, M.R., Berendzen, K., Wanke, D., Roig, C., Pozzi, C., Müller, K., Müller, J., Rohde, W., and Salamini, F. (2003). The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3. Plant J. 34: 813-826.
30. Shimojima, T., Okada, M., Nakayama, T., Ueda, H., Okawa, K., Iwamatsu, A., Handa, H., and Hirose, S. (2003). Drosophila FACT contributes to Hox gene expression through physical and functional interactions with GAGA factor. Genes Dev. 17: 1605-1616.
31. Walter, M., Chaban, C., Schütze, K., Batistic, O., Weckermann, K., Näke, C., Blazevic, D., Grefen, C., Schumacher, K., Oecking, C., Harter, K., and Kudla, J. (2004). Visualization of protein interactions in living plant cells using bimolecular fluorescence complementation. Plant J. 40: 428-438.
32. Wanke, D., Hohenstatt, M.L., Dynowski, M., Bloss, U., Hecker, A., Elgass, K., Hummel, S., Hahn, A., Caesar, K., Schleifenbaum, F., Harter, K., and Berendzen, K.W. (2011). Alanine zipper-like coiledcoil domains are necessary for homotypic dimerization of plant GAGA-factors in the nucleus and nucleolus. PLoS ONE 6: e16070.
33. Xiao, H., Sandaltzopoulos, R., Wang, H.M., Hamiche, A., Ranallo, R., Lee, K.M., Fu, D., and Wu, C. (2001). Dual functions of largest NURF subunit NURF301 in nucleosome sliding and transcription factor interactions. Mol. Cell 8: 531-543.