Genome sequence of strain IMCC14465, isolated from the east sea, belonging to the PS1 clade of Alphaproteobacteria

Journal of Bacteriology

Volumn 194, Issue 24, 2012, Pages 6952-6953

  Yang, Seung Jo ^a   Kang, Ilnam ^a   Cho, Jang Cheon ^a  

^a Inha University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; RNA 16S; RNA 23S; RNA 5S; SEA WATER; TRANSFER RNA;

ALPHAPROTEOBACTERIA; ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATE; COHAESIBACTER GELATINILYTICUS; COSTA RICA; DNA EXTRACTION; ENSIFER MEXICANUS; GENE SEQUENCE; MARINE ENVIRONMENT; NONHUMAN; NUCLEOTIDE SEQUENCE; PANAMA; PHYLOGENY; PRIORITY JOURNAL; RHIZOBIALES; RHODOBIUM GOKARNENSE;

ALPHAPROTEOBACTERIA; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; OCEANS AND SEAS; PHYLOGENY; RNA, BACTERIAL; SEAWATER; SEQUENCE ANALYSIS, DNA;

ALPHAPROTEOBACTERIA;

EID: 84870695196     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01888-12     Document Type: Article

References (11)

1. Aziz RK, et al. 2008. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9:75. doi:10.1186/1471-2164-9-75.
2. Beja O, et al. 2000. Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science 289:1902-1906.
3. Cho JC, Giovannoni SJ. 2004. Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria. Appl. Environ. Microbiol. 70:432-440.
4. Connon SA, Giovannoni SJ. 2002. High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates. Appl. Environ. Microbiol. 68:3878-3885.
5. Fuhrman JA, Schwalbach MS, Stingl U. 2008. Proteorhodopsins: an array of physiological roles? Nat. Rev. Microbiol. 6:488-494.
6. Iverson V, et al. 2012. Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota. Science 335:587-590.
7. Rappe MS, Connon SA, Vergin KL, Giovannoni SJ. 2002. Cultivation of the ubiquitous SAR11 marine bacterioplankton clade. Nature 418:630-633.
8. Stingl U, Tripp HJ, Giovannoni SJ. 2007. Improvements of highthroughput culturing yielded novel SAR11 strains and other abundant marine bacteria from the Oregon coast and the Bermuda Atlantic Time Series study site. ISME J. 1:361-371.
9. Suzuki MT, et al. 1997. Bacterial diversity among small-subunit rRNA gene clones and cellular isolates from the same seawater sample. Appl. Environ. Microbiol. 63:983-989.
10. Venter JC, et al. 2004. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66-74.
11. Walsh DA, et al. 2009. Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones. Science 326:578-582.