-
1
-
-
0000005079
-
A system for identifying genetic networks from gene expression patterns produced by gene disruptions and overexpressions
-
T. Akutsu, S. Kuhara, O. Maruyama, and S. Miyano, "A system for identifying genetic networks from gene expression patterns produced by gene disruptions and overexpressions," Genome Informatics, no.9, pp.151-160, 1998.
-
(1998)
Genome Informatics
, Issue.9
, pp. 151-160
-
-
Akutsu, T.1
Kuhara, S.2
Maruyama, O.3
Miyano, S.4
-
2
-
-
33846424927
-
Control of Boolean networks: Hardness results and algorithms for treestructured networks
-
T. Akutsu, M. Hayashida, W.-K. Ching, W.-K., and M.K. Ng, "Control of Boolean networks: hardness results and algorithms for treestructured networks," J. Theoretical Biology, vol.244, pp.670-679, 2007.
-
(2007)
J. Theoretical Biology
, vol.244
, pp. 670-679
-
-
Akutsu, T.1
Hayashida, M.2
Ching, W.-K.3
Ng, M.K.4
-
3
-
-
77950822324
-
Integer programmingbased methods for attractor detection and control of Boolean networks
-
T. Akutsu, M. Hayashida, and T. Tamura, "Integer programmingbased methods for attractor detection and control of Boolean networks," Proc. The combined 48th IEEE Conference on Decision and Control and 28th Chinese Control Conference, pp.5610-5617, 2009.
-
(2009)
Proc. The Combined 48th IEEE Conference on Decision and Control and 28th Chinese Control Conference
, pp. 5610-5617
-
-
Akutsu, T.1
Hayashida, M.2
Tamura, T.3
-
4
-
-
80053121012
-
Determining a singleton attractor of a Boolean network with nested canalyzing functions
-
T. Akutsu, A.A. Melkman, T. Tamura, and M. Yamamoto, "Determining a singleton attractor of a Boolean network with nested canalyzing functions," J. Computational Biology, vol.18, pp.1275-1290, 2011.
-
(2011)
J. Computational Biology
, vol.18
, pp. 1275-1290
-
-
Akutsu, T.1
Melkman, A.A.2
Tamura, T.3
Yamamoto, M.4
-
5
-
-
49649117268
-
Critical dynamics in genetic regulatory networks: Examples from four kingdoms
-
E. Balleza, E.R. Alvarez-Buylla, A. Chaos, S. Kauffman, I. Shmulevich, and M. Aldana. "Critical dynamics in genetic regulatory networks: examples from four kingdoms," PLoS One, vol.3, e2456, 2008.
-
(2008)
PLoS One
, vol.3
-
-
Balleza, E.1
Alvarez-Buylla, E.R.2
Chaos, A.3
Kauffman, S.4
Shmulevich, I.5
Aldana, M.6
-
6
-
-
84870707671
-
Finding optimal control policy in probabilistic Boolean networks with hard constraints by using integer programming and dynamic programming
-
to appear
-
X. Chen, T. Akutsu, T. Tamura, and W.-K. Ching, "Finding optimal control policy in probabilistic Boolean networks with hard constraints by using integer programming and dynamic programming," International Journal of Data Mining and Bioinformatics, to appear.
-
International Journal of Data Mining and Bioinformatics
-
-
Chen, X.1
Akutsu, T.2
Tamura, T.3
Ching, W.-K.4
-
7
-
-
67349272281
-
Controllability and observability of Boolean control networks
-
D. Cheng and H. Qi, "Controllability and observability of Boolean control networks," Automatica, vol.45, pp.1659-1667, 2009.
-
(2009)
Automatica
, vol.45
, pp. 1659-1667
-
-
Cheng, D.1
Qi, H.2
-
8
-
-
63049093000
-
Input-state approach to Boolean networks
-
D. Cheng, "Input-state approach to Boolean networks," IEEE Trans. Neural Netw., vol.20, pp.512-521, 2009.
-
(2009)
IEEE Trans. Neural Netw.
, vol.20
, pp. 512-521
-
-
Cheng, D.1
-
9
-
-
0038724486
-
External control in Markovian genetic regulatory networks
-
A. Datta, A. Choudhary, M.L. Bittner, and E.R. Dougherty, "External control in Markovian genetic regulatory networks," Mach. Learn., vol.52, pp.169-191, 2003.
-
(2003)
Mach. Learn.
, vol.52
, pp. 169-191
-
-
Datta, A.1
Choudhary, A.2
Bittner, M.L.3
Dougherty, E.R.4
-
10
-
-
43849093137
-
Search for steady states of piecewiselinear differential equation models of genetic regulatory networks
-
H. de Jong and M. Page, "Search for steady states of piecewiselinear differential equation models of genetic regulatory networks," IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.5, no.2, pp.208-222, 2008.
-
(2008)
IEEE/ACM Transactions on Computational Biology and Bioinformatics
, vol.5
, Issue.2
, pp. 208-222
-
-
De Jong, H.1
Page, M.2
-
11
-
-
0345393853
-
Identification of all steady states in large networks by logical analysis
-
V. Devloo, P. Hansen, and M. Labb'e, "Identification of all steady states in large networks by logical analysis," Bulletin of Mathematical Biology, vol.65, pp.1025-1051, 2003.
-
(2003)
Bulletin of Mathematical Biology
, vol.65
, pp. 1025-1051
-
-
Devloo, V.1
Hansen, P.2
Labb'E, M.3
-
12
-
-
79960906495
-
A SAT-based algorithm for finding attractors in synchronous Boolean networks
-
E. Dubrova and M. Tesienko, "A SAT-based algorithm for finding attractors in synchronous Boolean networks," IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.8, no.5, pp.1393-1399, 2011.
-
(2011)
IEEE/ACM Transactions on Computational Biology and Bioinformatics
, vol.8
, Issue.5
, pp. 1393-1399
-
-
Dubrova, E.1
Tesienko, M.2
-
14
-
-
50549088838
-
Synchronous versus asynchronous modeling of gene regulatory networks
-
A. Garg, A. DiCara, I. Xenarios, L. Mendoza, and G. DeMicheli, "Synchronous versus asynchronous modeling of gene regulatory networks," Bioinformatics, vol.24, pp.1917-1925, 2008.
-
(2008)
Bioinformatics
, vol.24
, pp. 1917-1925
-
-
Garg, A.1
Dicara, A.2
Xenarios, I.3
Mendoza, L.4
Demicheli, G.5
-
15
-
-
52949100547
-
Algorithms and complexity analyses for control of singleton attractors in Boolean networks
-
M. Hayashida, T. Tamura, T. Akutsu, S.-Q. Zhang, andW.-K. Ching, "Algorithms and complexity analyses for control of singleton attractors in Boolean networks," EURASIP Journal on Bioinformatics and Systems Biology, vol.2008, 521407, 2008.
-
(2008)
EURASIP Journal on Bioinformatics and Systems Biology
, vol.2008
, pp. 521407
-
-
Hayashida, M.1
Tamura, T.2
Akutsu, T.3
Zhang, W.-K.4
Ching, S.-Q.5
-
17
-
-
33747889591
-
Improving the efficiency of attractor cycle identification in Boolean networks
-
D.J. Irons, "Improving the efficiency of attractor cycle identification in Boolean networks," Physica D, vol.217, pp.7-21, 2006.
-
(2006)
Physica D
, vol.217
, pp. 7-21
-
-
Irons, D.J.1
-
20
-
-
0037551723
-
Can Markov chain models mimic biological regulations?
-
S. Kim, H. Li, E.R. Dougherty, N. Cao, Y. Chen,M. Bittner, and E.B. Suh, "Can Markov chain models mimic biological regulations?" J. Biological Systems, vol.10, pp.337-357, 2002.
-
(2002)
J. Biological Systems
, vol.10
, pp. 337-357
-
-
Kim, S.1
Li, H.2
Dougherty, E.R.3
Cao, N.4
Chen, Y.5
Bittner, M.6
Suh, E.B.7
-
21
-
-
1542619848
-
Cancer as a robust system: Implications for anticancer therapy
-
H. Kitano, "Cancer as a robust system: implications for anticancer therapy," Nature Reviews Cancer, vol.4, pp.227-235, 2004.
-
(2004)
Nature Reviews Cancer
, vol.4
, pp. 227-235
-
-
Kitano, H.1
-
22
-
-
77957800208
-
An integer programming approach to control problems in probabilistic Boolean networks
-
K. Kobayashi and K. Hiraishi. "An integer programming approach to control problems in probabilistic Boolean networks," Proc. 2010 American Control Conference, pp.6710-6715, 2010.
-
(2010)
Proc. 2010 American Control Conference
, pp. 6710-6715
-
-
Kobayashi, K.1
Hiraishi, K.2
-
23
-
-
79956212739
-
An integer programming approach to optimal control problems in context-sensitive probabilistic Boolean networks
-
K. Kobayashi and K. Hiraishi, "An integer programming approach to optimal control problems in context-sensitive probabilistic Boolean networks," Automatica, vol.47, pp.1260-1264, 2011.
-
(2011)
Automatica
, vol.47
, pp. 1260-1264
-
-
Kobayashi, K.1
Hiraishi, K.2
-
24
-
-
65549157940
-
Symbolic approaches for finding control strategies in Boolean networks
-
C.J. Langmead and S.K. Jha, "Symbolic approaches for finding control strategies in Boolean networks," J. Bioinformatics and Computational Biology, vol.7, pp.323-338, 2009.
-
(2009)
J. Bioinformatics and Computational Biology
, vol.7
, pp. 323-338
-
-
Langmead, C.J.1
Jha, S.K.2
-
25
-
-
79955879494
-
Controllability of complex networks
-
Y.-Y. Liu, J.-J. Slotin, and A.-L. Barab'asi, "Controllability of complex networks," Nature, vol.473, pp.167-173, 2011.
-
(2011)
Nature
, vol.473
, pp. 167-173
-
-
Liu, Y.-Y.1
Slotin, J.-J.2
Barab'Asi, A.-L.3
-
26
-
-
0031579615
-
Controlling chaos in random Boolean networks
-
B. Luque and R.V. Sol'e, "Controlling chaos in random Boolean networks," Europhysics Letters, vol.37, pp.597-602, 1997.
-
(1997)
Europhysics Letters
, vol.37
, pp. 597-602
-
-
Luque, B.1
Sol'E, R.V.2
-
27
-
-
80053119334
-
Determining a singleton attractor of an AND/OR Boolean network in O(1.587n) time
-
A.A. Melkman, T. Tamura, and T. Akutsu, "Determining a singleton attractor of an AND/OR Boolean network in O(1.587n) time," Inf. Process. Lett., vol.110, pp.565-569, 2010.
-
(2010)
Inf. Process. Lett.
, vol.110
, pp. 565-569
-
-
Melkman, A.A.1
Tamura, T.2
Akutsu, T.3
-
28
-
-
0037799461
-
Superpolynomial growth in the number of attractors in Kauffman networks
-
B. Samuelsson and C. Troein, "Superpolynomial growth in the number of attractors in Kauffman networks," Phys. Rev. Lett., vol.90, 098701, 2003.
-
(2003)
Phys. Rev. Lett.
, vol.90
, pp. 098701
-
-
Samuelsson, B.1
Troein, C.2
-
29
-
-
44649167785
-
The polynomial-time hierarchy
-
L.J. Stockmeyer, "The polynomial-time hierarchy," Theor. Comput. Sci., vol.3, pp.1-22, 1976.
-
(1976)
Theor. Comput. Sci.
, vol.3
, pp. 1-22
-
-
Stockmeyer, L.J.1
-
30
-
-
36248966518
-
Induction of pluripotent stem cells from adult human fibroblasts by defined factors
-
K. Takahashi, K. Tanabe, M. Ohnuki, M. Narita, T. Ichisaka, K. Tomoda, and S. Yamanaka, "Induction of pluripotent stem cells from adult human fibroblasts by defined factors," Cell, vol.131, pp.1-12, 2007.
-
(2007)
Cell
, vol.131
, pp. 1-12
-
-
Takahashi, K.1
Tanabe, K.2
Ohnuki, M.3
Narita, M.4
Ichisaka, T.5
Tomoda, K.6
Yamanaka, S.7
-
31
-
-
71649101152
-
Detecting a singleton attractor in a Boolean network utilizing SAT algorithms
-
Feb
-
T. Tamura and T. Akutsu, "Detecting a singleton attractor in a Boolean network utilizing SAT algorithms," IEICE Trans. Fundamentals, vol.E92-A, no.2, pp.493-501, Feb. 2009.
-
(2009)
IEICE Trans. Fundamentals
, vol.E92-A
, Issue.2
, pp. 493-501
-
-
Tamura, T.1
Akutsu, T.2
-
32
-
-
34250800265
-
Algorithms for finding small attractors in Boolean networks
-
S.-Q. Zhang, M. Hayashida, T. Akutsu, W.-K. Ching, and M.K. Ng, "Algorithms for finding small attractors in Boolean networks," EURASIP Journal on Bioinformatics and Systems Biology, vol.2007, 20180, 2007.
-
(2007)
EURASIP Journal on Bioinformatics and Systems Biology
, vol.2007
, pp. 20180
-
-
Zhang, S.-Q.1
Hayashida, M.2
Akutsu, T.3
Ching, W.-K.4
Ng, M.K.5
|