메뉴 건너뛰기




Volumn 40, Issue 21, 2012, Pages

Analysis of the epigenetic status of telomeres by using ChIP-seq data

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE H3;

EID: 84870589400     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks730     Document Type: Article
Times cited : (38)

References (46)
  • 1
    • 14544277627 scopus 로고    scopus 로고
    • Telomeres and telomerase: Their mechanisms of action and the effects of altering their functions
    • DOI 10.1016/j.febslet.2004.11.036
    • Blackburn, E. (2005) Telomeres and telomerase: their mechanisms of action and the effects of altering their functions. FEBS Lett., 579, 859-862. (Pubitemid 40361854)
    • (2005) FEBS Letters , vol.579 , Issue.4 SPEC. ISS. , pp. 859-862
    • Blackburn, E.H.1
  • 2
    • 77954951519 scopus 로고    scopus 로고
    • Beginning to understand the end of the chromosome
    • Cech, T. (2004) Beginning to understand the end of the chromosome. Cell, 43, 405-413.
    • (2004) Cell , vol.43 , pp. 405-413
    • Cech, T.1
  • 3
    • 34250647098 scopus 로고    scopus 로고
    • Telomerase RNA levels limit the telomere length equilibrium
    • Greider, C. (2006) Telomerase RNA levels limit the telomere length equilibrium. Cold Spring Harb. Symp. Quant. Biol., 71, 225-229.
    • (2006) Cold Spring Harb. Symp. Quant. Biol , vol.71 , pp. 225-229
    • Greider, C.1
  • 5
    • 0025818312 scopus 로고
    • The centromere region of Arabidopsis thaliana chromosome 1 contains telomere-similar sequences
    • Richards, E., Goodman, H. and Ausubel, F. (1991) The centromere region of Arabidopsis thaliana chromosome 1 contains telomere-similar sequences. Nucleic Acids Res., 19, 3351-3357. (Pubitemid 21912693)
    • (1991) Nucleic Acids Research , vol.19 , Issue.12 , pp. 3351-3357
    • Richards, E.J.1    Goodman, H.M.2    Ausubel, F.M.3
  • 6
    • 38649118195 scopus 로고    scopus 로고
    • Endings in the middle: Current knowledge of interstitial telomeric sequences
    • DOI 10.1016/j.mrrev.2007.08.006, PII S1383574207000348
    • Lin, K. and Yan, J. (2008) Endings in the middle: current knowledge of interstitial telomeric sequences. Mutation Res., 658, 95-110. (Pubitemid 351172882)
    • (2008) Mutation Research - Reviews in Mutation Research , vol.658 , Issue.1-2 , pp. 95-110
    • Lin, K.W.1    Yan, J.2
  • 7
    • 0028244069 scopus 로고
    • ITSs within the Arabidopsis thaliana genome
    • Regad, F., Lebas, M. and Lescure, B. (1994) ITSs within the Arabidopsis thaliana genome. J. Mol. Biol., 239, 163-169.
    • (1994) J. Mol. Biol , vol.239 , pp. 163-169
    • Regad, F.1    Lebas, M.2    Lescure, B.3
  • 8
    • 0036241123 scopus 로고    scopus 로고
    • Interstitial telomere-like repeats in the Arabidopsis thaliana genome
    • DOI 10.1266/ggs.77.63
    • Uchida, W., Matsunaga, S., Sugiyama, R. and Kawano, S. (2002) Interstitial telomere-like repeats in the Arabidopsis thaliana genome. Genes Genet. Syst., 77, 63-67. (Pubitemid 34456631)
    • (2002) Genes and Genetic Systems , vol.77 , Issue.1 , pp. 63-67
    • Uchida, W.1    Matsunaga, S.2    Sugiyama, R.3    Kawano, S.4
  • 9
    • 0037143444 scopus 로고    scopus 로고
    • Interplay between two epigenetic marks: DNA methylation and histone H3 lysine 9 methylation
    • DOI 10.1016/S0960-9822(02)00976-4, PII S0960982202009764
    • Johnson, L., Cao, X. and Jacobsen, S. (2002) Interplay between two epigenetic marks: DNA methylation and histone H3 lysine 9 methylation. Curr. Biol., 12, 1360-1367. (Pubitemid 34915537)
    • (2002) Current Biology , vol.12 , Issue.16 , pp. 1360-1367
    • Johnson, L.M.1    Cao, X.2    Jacobsen, S.E.3
  • 10
    • 0035874929 scopus 로고    scopus 로고
    • Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation
    • DOI 10.1126/science.1059745
    • Lindroth, A., Cao, X., Jackson, J., Zilberman, D., McCallum, C., Henikoff, S. and Jacobsen, S. (2001) Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation. Science, 292, 2077-2080. (Pubitemid 32691574)
    • (2001) Science , vol.292 , Issue.5524 , pp. 2077-2080
    • Lindroth, A.M.1    Cao, X.2    Jackson, J.P.3    Zilberman, D.4    McCallum, C.M.5    Henikoff, S.6    Jacobsen, S.E.7
  • 12
  • 13
    • 0037355216 scopus 로고    scopus 로고
    • Chromatin immunoprecipitation reveals that the 180-bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres
    • Nagaki, K., Talbert, P., Zhong, C., Dawe, R., Henikoff, S. and Jiang, J. (2003) Chromatin immunoprecipitation reveals that the 180-bp satelite repeat is the key functional element of Arabidopsis thaliana centromeres. Genetics, 163, 1221-1225. (Pubitemid 36417961)
    • (2003) Genetics , vol.163 , Issue.3 , pp. 1221-1225
    • Nagaki, K.1    Talbert, P.B.2    Zhong, C.X.3    Dawe, R.K.4    Henikoff, S.5    Jiang, J.6
  • 14
    • 79953675088 scopus 로고    scopus 로고
    • Arabidopsis thaliana telomeres exhibit euchromatic features
    • Vaquero-Sedas, M., Ga? mez-Arjona, F. and Vega-Palas, M. (2010) Arabidopsis thaliana telomeres exhibit euchromatic features. Nucleic Acids Res., 39, 2007-2017.
    • (2010) Nucleic Acids Res , vol.39 , pp. 2007-2017
    • Vaquero-Sedas, M.1    Gamez-Arjona, F.2    Vega-Palas, M.3
  • 15
    • 43549115088 scopus 로고    scopus 로고
    • Epigenetic modification of centromeric chromatin: Hypomethylation of DNA sequences in the CENH3-associated chromatin in Arabidopsis thaliana and maize
    • DOI 10.1105/tpc.107.057083
    • Zhang, W., Lee, H., Koo, D. and Jiang, J. (2008) Epigenetic modification of centromeric chromatin: Hypomethylation of DNA sequences in the CENH3-associated chromatin in Arabidopsis thaliana and maize. Plant Cell, 20, 25-34. (Pubitemid 352844031)
    • (2008) Plant Cell , vol.20 , Issue.1 , pp. 25-34
    • Zhang, W.1    Lee, H.-R.2    Koo, D.-H.3    Jiang, J.4
  • 16
    • 33646048752 scopus 로고    scopus 로고
    • Chromosomal histone modification patterns-from conservation to diversity
    • Fuchs, J., Demidov, D., Houben, A. and Schubert, I. (2006) Chromosomal histone modification patterns-from conservation to diversity. Trends Plant Sci., 11, 199-208.
    • (2006) Trends Plant Sci , vol.11 , pp. 199-208
    • Fuchs, J.1    Demidov, D.2    Houben, A.3    Schubert, I.4
  • 17
    • 30944463788 scopus 로고    scopus 로고
    • Heterochromatin proteins and the control of heterochromatic gene silencing in Arabidopsis
    • DOI 10.1016/j.jplph.2005.10.015, PII S0176161705004499
    • Fischer, A., Hofmann, I., Naumann, K. and Reuter, G. (2006) Heterochromatin proteins and the control of heterochromatic gene silencing in Arabidopsis. J. Plant Physiol., 163, 358-368. (Pubitemid 43112089)
    • (2006) Journal of Plant Physiology , vol.163 , Issue.3 , pp. 358-368
    • Fischer, A.1    Hofmann, I.2    Naumann, K.3    Reuter, G.4
  • 18
    • 13544271154 scopus 로고    scopus 로고
    • Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications
    • DOI 10.1093/nar/gkh992
    • Johnson, L., Mollah, S., Garcia, B., Muratore, T., Shabanowitz, J., Hunt, D. and Jacobsen, S. (2004) Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications. Nucleic Acids Res., 32, 6511-6518. (Pubitemid 40220362)
    • (2004) Nucleic Acids Research , vol.32 , Issue.22 , pp. 6511-6518
    • Johnson, L.1    Mollah, S.2    Garcia, B.A.3    Muratore, T.L.4    Shabanowitz, J.5    Hunt, D.F.6    Jacobsen, S.E.7
  • 20
    • 80052573895 scopus 로고    scopus 로고
    • On the chromatin structure of eukaryotic telomeres
    • Vaquero-Sedas, M. and Vega-Palas, M. (2011) On the chromatin structure of eukaryotic telomeres. Epigenetics, 6, 1055-1058.
    • (2011) Epigenetics , vol.6 , pp. 1055-1058
    • Vaquero-Sedas, M.1    Vega-Palas, M.2
  • 21
    • 0024281368 scopus 로고
    • Isolation of a higher eukaryotic telomere from Arabidopsis thaliana
    • Richards, E. and Ausubel, F. (1988) Isolation of a higher eukaryotic telomere from Arabidopsis thaliana. Cell, 53, 127-136.
    • (1988) Cell , vol.53 , pp. 127-136
    • Richards, E.1    Ausubel, F.2
  • 22
    • 4043074969 scopus 로고    scopus 로고
    • Length regulation and dynamics of individual telomere tracts in wild-type Arabidopsis
    • DOI 10.1105/tpc.104.023093
    • Shakirov, E. and Shippen, D. (2004) Length regulation and dynamics of individual telomere tracts in wild-type Arabidopsis. Plant Cell, 16, 1959-1967. (Pubitemid 39059721)
    • (2004) Plant Cell , vol.16 , Issue.8 , pp. 1959-1967
    • Shakirov, E.V.1    Shippen, D.E.2
  • 23
    • 0034803038 scopus 로고    scopus 로고
    • Visualization of the terminal structure of rice chromosomes 6 and 12 with multicolor FISH to chromosomes and extended DNA fibers
    • DOI 10.1023/A:1011632111845
    • Ohmido, N., Kijima, K., Ashikawa, I., de Jong, J. and Fukui, K. (2001) Visualization of the terminal structure of rice chromosomes 6 and 12 with multicolor FISH to chromosomes and extended DNA fibers. Plant Mol. Biol., 47, 413-421. (Pubitemid 32900949)
    • (2001) Plant Molecular Biology , vol.47 , Issue.3 , pp. 413-421
    • Ohmido, N.1    Kijima, K.2    Ashikawa, I.3    De Jong, J.H.4    Fukui, K.5
  • 26
    • 79953296447 scopus 로고    scopus 로고
    • Coordinated histone modifications are associated with gene expression variation within and between species
    • Ha, M., Ng, D., Li, W. and Chen, Z. (2011) Coordinated histone modifications are associated with gene expression variation within and between species. Genome Res., 21, 590-598.
    • (2011) Genome Res , vol.21 , pp. 590-598
    • Ha, M.1    Ng, D.2    Li, W.3    Chen, Z.4
  • 27
    • 77950346035 scopus 로고    scopus 로고
    • Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids
    • He, G., Zhu, X., Elling, A., Chen, L., Wang, X., Guo, L., Liang, M., He, H., Zhang, H. and Chen, F. (2010) Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids. Plant Cell, 22, 17-33.
    • (2010) Plant Cell , vol.22 , pp. 17-33
    • He, G.1    Zhu, X.2    Elling, A.3    Chen, L.4    Wang, X.5    Guo, L.6    Liang, M.7    He, H.8    Zhang, H.9    Chen, F.10
  • 28
    • 0036671661 scopus 로고    scopus 로고
    • Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon
    • DOI 10.1105/tpc.003079
    • Cheng, Z., Dong, F., Langdon, T., Ouyang, S., Buell, C., Gu, M., Blattner, F. and Jiang, J. (2002) Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon. Plant Cell, 14, 1691-1704. (Pubitemid 35002929)
    • (2002) Plant Cell , vol.14 , Issue.8 , pp. 1691-1704
    • Cheng, Z.1    Dong, F.2    Langdon, T.3    Ouyang, S.4    Buell, C.R.5    Gu, M.6    Blattner, F.R.7    Jiang, J.8
  • 29
    • 33750932803 scopus 로고    scopus 로고
    • Transcription and evolutionary dynamics of the centromeric satellite repeat CentO in rice
    • DOI 10.1093/molbev/msl127
    • Lee, H., Neumann, P., Macas, J. and Jiang, J. (2006) Transcription and evolutionary dynamics of the centromeric satellite repeat CentO in rice. Mol. Biol. Evol., 23, 2505-2520. (Pubitemid 44737144)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.12 , pp. 2505-2520
    • Lee, H.-R.1    Neumann, P.2    Macas, J.3    Jiang, J.4
  • 30
    • 77954943542 scopus 로고    scopus 로고
    • Genome-wide mapping of cytosine methylation revealed dynamic DNA methylation patterns associated with genes and centromeres in rice
    • Yan, H., Kikuchi, S., Neumann, P., Zhang, W., Wu, Y., Chen, F. and Jiang, J. (2010) Genome-wide mapping of cytosine methylation revealed dynamic DNA methylation patterns associated with genes and centromeres in rice. Plant J., 63, 353-365.
    • (2010) Plant J , vol.63 , pp. 353-365
    • Yan, H.1    Kikuchi, S.2    Neumann, P.3    Zhang, W.4    Wu, Y.5    Chen, F.6    Jiang, J.7
  • 31
    • 33644791631 scopus 로고    scopus 로고
    • The transcribed 165-bp CentO satellite is the major functional centromeric element in the wild rice species Oryza punctata
    • DOI 10.1104/pp.105.064147
    • Zhang, W., Yi, C., Bao, W., Liu, B., Cui, J., Yu, H., Cao, X., Gu, M., Liu, M. and Cheng, Z. (2005) The transcribed 165-bp CentO satellite is the major functional centromeric element in the wild rice species Oryza punctata. Plant Physiol., 139, 306-315. (Pubitemid 43951614)
    • (2005) Plant Physiology , vol.139 , Issue.1 , pp. 306-315
    • Zhang, W.1    Yi, C.2    Bao, W.3    Liu, B.4    Cui, J.5    Yu, H.6    Cao, X.7    Gu, M.8    Liu, M.9    Cheng, Z.10
  • 33
    • 61449131508 scopus 로고    scopus 로고
    • ERCC1/XPF protects short telomeres from homologous recombination in Arabidopsis thaliana
    • Vannier, J., Depeiges, A., White, C. and Gallego, M. (2009) ERCC1/XPF protects short telomeres from homologous recombination in Arabidopsis thaliana. PLoS Genet., 5, e1000380.
    • (2009) PLoS Genet , vol.5
    • Vannier, J.1    Depeiges, A.2    White, C.3    Gallego, M.4
  • 34
    • 56549089924 scopus 로고    scopus 로고
    • Telomeric nucleosomes: Forgotten players at chromosome ends
    • Pisano, S., Galati, A. and Cacchione, S. (2008) Telomeric nucleosomes: Forgotten players at chromosome ends. Cell. Mol. Life Sci., 65, 3553-3563.
    • (2008) Cell. Mol. Life Sci , vol.65 , pp. 3553-3563
    • Pisano, S.1    Galati, A.2    Cacchione, S.3
  • 35
    • 0029007358 scopus 로고
    • Organization of telomeric and subtelomeric chromatin in the higher plant Nicotiana tabacum
    • Fajkus, J., KovariK, A., Kralovics, R. and Bezdek, M. (1995) Organization of telomeric and subtelomeric chromatin in the higher plant Nicotiana tabacum. Mol. Gen. Genet., 247, 633-638.
    • (1995) Mol. Gen. Genet , vol.247 , pp. 633-638
    • Fajkus, J.1    Kovarik, A.2    Kralovics, R.3    Bezdek, M.4
  • 36
    • 2442463402 scopus 로고    scopus 로고
    • Organization of telomeric nucleosomes: Atomic force microscopy imaging and theoretical modeling
    • DOI 10.1016/j.febslet.2004.04.032, PII S0014579304004715
    • Mechelli, R., Anselmi, C., Cacchione, S., De Santis, P. and Savino, M. (2004) Organization of telomeric nucleosomes: atomic force microscopy imaging and theoretical modeling. FEBS Lett., 566, 131-135. (Pubitemid 38625946)
    • (2004) FEBS Letters , vol.566 , Issue.1-3 , pp. 131-135
    • Mechelli, R.1    Anselmi, C.2    Cacchione, S.3    De Santis, P.4    Savino, M.5
  • 37
    • 33750160175 scopus 로고    scopus 로고
    • AFM imaging and theoretical modeling studies of sequence-dependent nucleosome positioning
    • DOI 10.1016/j.bpc.2006.05.012, PII S0301462206001712
    • Pisano, S., Pascucci, E., Cacchione, S., De Santis, P. and Savino, M. (2006) AFM imaging and theoretical modeling studies of sequence-dependent nucleosome positioning. Biophys. Chem., 124, 81-89. (Pubitemid 44602322)
    • (2006) Biophysical Chemistry , vol.124 , Issue.2 , pp. 81-89
    • Pisano, S.1    Pascucci, E.2    Cacchione, S.3    De Santis, P.4    Savino, M.5
  • 39
    • 79955124012 scopus 로고    scopus 로고
    • Epigenetic modifications in plants: An evolutionary perspective
    • Feng, S. and Jacobsen, S. (2011) Epigenetic modifications in plants: an evolutionary perspective. Curr. Opin. Plant Biol., 14, 179-186.
    • (2011) Curr. Opin. Plant Biol , vol.14 , pp. 179-186
    • Feng, S.1    Jacobsen, S.2
  • 40
    • 69449097106 scopus 로고    scopus 로고
    • Diversity of Polycomb group complexes in plants: Same rules
    • Hennig, L. and Derkacheva, M. (2009) Diversity of Polycomb group complexes in plants: same rules, different players? Trends Genet., 25, 414-423.
    • (2009) Different Players? Trends Genet , vol.25 , pp. 414-423
    • Hennig, L.1    Derkacheva, M.2
  • 41
    • 34249825181 scopus 로고    scopus 로고
    • Polycomb group and trithorax group proteins in Arabidopsis
    • DOI 10.1016/j.bbaexp.2007.01.010, PII S0167478107000309, Plant Chromatin: Structure and Expression
    • Pien, S. and Grossniklaus, U. (2007) Polycomb group and trithorax group proteins in Arabidopsis. Biochim. Biophys. Acta, 1769, 375-382. (Pubitemid 46855943)
    • (2007) Biochimica et Biophysica Acta - Gene Structure and Expression , vol.1769 , Issue.5-6 , pp. 375-382
    • Pien, S.1    Grossniklaus, U.2
  • 42
    • 43249091345 scopus 로고    scopus 로고
    • Distinctive core histone post-translational modification patterns in Arabidopsis thaliana
    • Zhang, K., Sridhar, V., Zhu, J., Kapoor, A. and Zhu, J. (2007) Distinctive core histone post-translational modification patterns in Arabidopsis thaliana. PLoS One, 2, e1210.
    • (2007) PLoS One , vol.2
    • Zhang, K.1    Sridhar, V.2    Zhu, J.3    Kapoor, A.4    Zhu, J.5
  • 43
    • 79955473684 scopus 로고    scopus 로고
    • Operating on chromatin, a colorful language where context matters
    • Gardner, K., Allis, C. and Strahl, B. (2011) Operating on chromatin, a colorful language where context matters. J. Mol. Biol., 409, 36-46.
    • (2011) J. Mol. Biol , vol.409 , pp. 36-46
    • Gardner, K.1    Allis, C.2    Strahl, B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.