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Volumn 28, Issue 20, 2012, Pages 2648-2653

Qualitative translation of relations from BioPAX to SBML qual

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER LANGUAGE; COMPUTER PROGRAM; FACTUAL DATABASE; HUMAN; INTERNET; SYSTEMS BIOLOGY;

EID: 84870474617     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts508     Document Type: Article
Times cited : (20)

References (19)
  • 1
    • 68749099453 scopus 로고    scopus 로고
    • Pathway databases and tools for their exploitation: Benefits, current limitations and challenges
    • Bauer-Mehren, A. et al (2009) Pathway databases and tools for their exploitation: benefits, current limitations and challenges. Mol Syst. Biol, 5, 290.
    • (2009) Mol Syst. Biol , vol.5 , pp. 290
    • Bauer-Mehren, A.1
  • 2
    • 84870429670 scopus 로고    scopus 로고
    • last accessed date March 22, 2012
    • Berenguier, D. et al (2011) Qualitative models (qual). Available at http://sbml.org/Community/Wiki/SBML-Level-3-Proposals/Qualitative-Models (last accessed date March 22, 2012).
    • (2011) Qualitative Models (Qual)
    • Berenguier, D.1
  • 3
    • 84860490976 scopus 로고    scopus 로고
    • The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
    • Caspi, R. et al (2012) The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res., 40 (Database issue), D742-D753.
    • (2012) Nucleic Acids Res. , vol.40 , Issue.DATABASE ISSUE
    • Caspi, R.1
  • 4
    • 80155212661 scopus 로고    scopus 로고
    • Controlled vocabularies and semantics in systems biology
    • Courtot, M. et al (2011) Controlled vocabularies and semantics in systems biology. Mol Syst. Biol, 7, 543.
    • (2011) Mol Syst. Biol , vol.7 , pp. 543
    • Courtot, M.1
  • 5
    • 77956664073 scopus 로고    scopus 로고
    • The BioPAX community standard for pathway data sharing
    • Demir, E. et al (2010) The BioPAX community standard for pathway data sharing. Nat. Biotechnol, 28, 935-942.
    • (2010) Nat. Biotechnol , vol.28 , pp. 935-942
    • Demir, E.1
  • 6
    • 79960423002 scopus 로고    scopus 로고
    • JSBML: A flexible Java library for working with SBML
    • Dräger, A. et al (2011) JSBML: a flexible Java library for working with SBML. Bioinformatics, 27, 2167-2168.
    • (2011) Bioinformatics , vol.27 , pp. 2167-2168
    • Dräger, A.1
  • 7
    • 84870420832 scopus 로고    scopus 로고
    • European Bioinformatics Institute-Computational Systems Neurobiology Group last accessed date March 22, 2012
    • European Bioinformatics Institute-Computational Systems Neurobiology Group(2011) System biology format converter (SBFC). Available at http://www.ebi.ac.uk/compneur-srv/sbml/converters/SBMLtoBioPax.html (last accessed date March 22, 2012).
    • (2011) System Biology Format Converter (SBFC)
  • 8
    • 34249880382 scopus 로고    scopus 로고
    • Integration of CellDesigner and SABIO-RK
    • Funahashi, A. et al (2007) Integration of CellDesigner and SABIO-RK. In Silico Biol, 7 (Suppl. 2), S81-S90.
    • (2007) Silico Biol , vol.7 , Issue.SUPPL. 2
    • Funahashi, A.1
  • 9
    • 33845368513 scopus 로고    scopus 로고
    • Copasi - A complex pathway simulator
    • Hoops, S. et al (2006) Copasi-a complex pathway simulator. Bioinformatics, 22, 3067-3074.
    • (2006) Bioinformatics , vol.22 , pp. 3067-3074
    • Hoops, S.1
  • 10
    • 0037342537 scopus 로고    scopus 로고
    • The systems biology markup language (SBML): A medium for representation and exchange of biochemical network models
    • Hucka, M. et al (2003) The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics, 19, 524-531.
    • (2003) Bioinformatics , vol.19 , pp. 524-531
    • Hucka, M.1
  • 11
    • 33644874819 scopus 로고    scopus 로고
    • From genomics to chemical genomics: New developments in KEGG
    • Kanehisa, M. et al (2006) From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res., 34 (Database issue), D354-D357.
    • (2006) Nucleic Acids Res. , vol.34 , Issue.DATABASE ISSUE
    • Kanehisa, M.1
  • 12
    • 28644433993 scopus 로고    scopus 로고
    • Minimum information requested in the annotation of biochemical models (MIRIAM)
    • Novère, N.L. et al (2005) Minimum information requested in the annotation of biochemical models (MIRIAM). Nat. Biotechnol, 23, 1509-1515.
    • (2005) Nat. Biotechnol , vol.23 , pp. 1509-1515
    • Novère, N.L.1
  • 13
    • 70349548795 scopus 로고    scopus 로고
    • Integrating BioPAX pathway knowledge with SBML models
    • Rübenacker, O. et al. (2009) Integrating BioPAX pathway knowledge with SBML models. IET Syst. Biol, 3, 317-328.
    • (2009) IET Syst. Biol , vol.3 , pp. 317-328
    • Rübenacker, O.1
  • 14
    • 58149186477 scopus 로고    scopus 로고
    • PID: The pathway interaction database
    • Schaefer, C.F. et al (2009) PID: the pathway interaction database. Nucleic Acids Res., 37 (Database issue), D674-D679.
    • (2009) Nucleic Acids Res. , vol.37 , Issue.DATABASE ISSUE
    • Schaefer, C.F.1
  • 15
    • 0142219725 scopus 로고    scopus 로고
    • Quantitative cell biology with the virtual cell
    • Slepchenko, B.M. et al (2003) Quantitative cell biology with the virtual cell. Trends Cell Biol, 13, 570-576.
    • (2003) Trends Cell Biol , vol.13 , pp. 570-576
    • Slepchenko, B.M.1
  • 16
    • 79551587720 scopus 로고    scopus 로고
    • Cytoscape 2.8: New features for data integration and network visualization
    • Smoot, M.E. et al (2011) Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics, 27, 431-432.
    • (2011) Bioinformatics , vol.27 , pp. 431-432
    • Smoot, M.E.1
  • 17
    • 33845440240 scopus 로고    scopus 로고
    • Representing, storing and accessing molecular interaction data: A review of models and tools
    • Strömbäck, L. et al. (2006) Representing, storing and accessing molecular interaction data: a review of models and tools. Brief Bioinform., 7, 331-338.
    • (2006) Brief Bioinform. , vol.7 , pp. 331-338
    • Strömbäck, L.1
  • 18
    • 28944444766 scopus 로고    scopus 로고
    • Representations of molecular pathways: An evaluation of SBML, PSI MI and BioPAX
    • Strömbäck, L. and Lambrix, P. (2005) Representations of molecular pathways: an evaluation of SBML, PSI MI and BioPAX. Bioinformatics, 21, 4401-4407.
    • (2005) Bioinformatics , vol.21 , pp. 4401-4407
    • Strömbäck, L.1    Lambrix, P.2
  • 19
    • 40749087306 scopus 로고    scopus 로고
    • BiNoM: A Cytoscape plugin for manipulating and analyzing biological networks
    • Zinovyev, A. et al (2008) BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks. Bioinformatics, 24, 876-877.
    • (2008) Bioinformatics , vol.24 , pp. 876-877
    • Zinovyev, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.