Quantifying uniformity of mapped reads

Bioinformatics

Volumn 28, Issue 20, 2012, Pages 2680-2682

  Hower, Valerie ^a   Starfield, Richard ^b   Roberts, Adam ^c   Pachter, Lior ^b,c  

^a Department of Biology   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; HIGH THROUGHPUT SEQUENCING; QUALITY CONTROL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; STANDARD; STATISTICAL ANALYSIS;

DATA INTERPRETATION, STATISTICAL; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; QUALITY CONTROL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, RNA; SOFTWARE;

EID: 84870460907     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts451     Document Type: Article

References (4)

1. Evans, S. et al. (2010) Coverage statistics for sequence census methods. BMC Bioinformatics, 11, 430.
2. Lander, E. and Waterman, M. (1988) Genomic mapping by fingerprinting random clones: a mathematical analysis. Genomics, 2, 231-239.
3. Langmead, B. et al. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
4. Levin, J.Z. et al. (2010) Comprehensive comparative analysis of strand-specific RNA sequencing methods. Nat. Meth., 7, 709-715.