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Volumn 13, Issue 1, 2013, Pages 96-104

Differential presence of Papillomavirus variants in cervical cancer: An analysis for HPV33, HPV45 and HPV58

Author keywords

Cancer; Human papillomaviruses; Infection; Phylogeny; Squamous cell carcinoma; Variants

Indexed keywords

PROTEIN E6; PROTEIN E7; VIRUS DNA;

EID: 84870344500     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2012.09.011     Document Type: Article
Times cited : (18)

References (60)
  • 1
    • 0034466769 scopus 로고    scopus 로고
    • The ubiquity and impressive genomic diversity of human skin papillomaviruses suggest a commensalic nature of these viruses
    • Antonsson A., Forslund O., Ekberg H., Sterner G., Hansson B.G. The ubiquity and impressive genomic diversity of human skin papillomaviruses suggest a commensalic nature of these viruses. J. Virol. 2000, 74:11636-11641.
    • (2000) J. Virol. , vol.74 , pp. 11636-11641
    • Antonsson, A.1    Forslund, O.2    Ekberg, H.3    Sterner, G.4    Hansson, B.G.5
  • 3
    • 0037709889 scopus 로고    scopus 로고
    • General acquisition of human papillomavirus infections of skin occurs in early infancy
    • Antonsson A., Karanfilovska S., Lindqvist P.G., Hansson B.G. General acquisition of human papillomavirus infections of skin occurs in early infancy. J. Clin. Microbiol. 2003, 41:2509-2514.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 2509-2514
    • Antonsson, A.1    Karanfilovska, S.2    Lindqvist, P.G.3    Hansson, B.G.4
  • 4
    • 79960414804 scopus 로고    scopus 로고
    • Aligning short reads to reference alignments and trees
    • Berger S.A., Stamatakis A. Aligning short reads to reference alignments and trees. Bioinformatics 2011, 27:2068-2075.
    • (2011) Bioinformatics , vol.27 , pp. 2068-2075
    • Berger, S.A.1    Stamatakis, A.2
  • 5
    • 31844436239 scopus 로고    scopus 로고
    • Genome variation of human papillomavirus types: phylogenetic and medical implications
    • Bernard H.U., Calleja-Macias I.E., Dunn S.T. Genome variation of human papillomavirus types: phylogenetic and medical implications. Int. J. Cancer 2006, 118:1071-1076.
    • (2006) Int. J. Cancer , vol.118 , pp. 1071-1076
    • Bernard, H.U.1    Calleja-Macias, I.E.2    Dunn, S.T.3
  • 6
    • 77950938389 scopus 로고    scopus 로고
    • Classification of papillomaviruses (PVs) based on 189 PV types and proposal of taxonomic amendments
    • Bernard H.U., Burk R.D., Chen Z., van Doorslaer K., Hausen H.Z., de Villiers E.M. Classification of papillomaviruses (PVs) based on 189 PV types and proposal of taxonomic amendments. Virology 2010, 401:70-79.
    • (2010) Virology , vol.401 , pp. 70-79
    • Bernard, H.U.1    Burk, R.D.2    Chen, Z.3    van Doorslaer, K.4    Hausen, H.Z.5    de Villiers, E.M.6
  • 8
    • 10044270097 scopus 로고    scopus 로고
    • Mucosal human papillomaviruses encode four different E5 proteins whose chemistry and phylogeny correlate with malignant or benign growth
    • Bravo I.G., Alonso A. Mucosal human papillomaviruses encode four different E5 proteins whose chemistry and phylogeny correlate with malignant or benign growth. J. Virol. 2004, 78:13613-13626.
    • (2004) J. Virol. , vol.78 , pp. 13613-13626
    • Bravo, I.G.1    Alonso, A.2
  • 9
    • 33947535104 scopus 로고    scopus 로고
    • Phylogeny and evolution of papillomaviruses based on the E1 and E2 proteins
    • Bravo I.G., Alonso A. Phylogeny and evolution of papillomaviruses based on the E1 and E2 proteins. Virus Genes 2007, 34:249-262.
    • (2007) Virus Genes , vol.34 , pp. 249-262
    • Bravo, I.G.1    Alonso, A.2
  • 10
    • 77957011482 scopus 로고    scopus 로고
    • The clinical importance of understanding the evolution of papillomaviruses
    • Bravo I.G., de Sanjose S., Gottschling M. The clinical importance of understanding the evolution of papillomaviruses. Trends Microbiol. 2010, 18:432-438.
    • (2010) Trends Microbiol. , vol.18 , pp. 432-438
    • Bravo, I.G.1    de Sanjose, S.2    Gottschling, M.3
  • 11
    • 79952701433 scopus 로고    scopus 로고
    • Papillomaviruses and Darwinian classification: response to van Doorslaer et al
    • Bravo I.G., de Sanjose S., Gottschling M. Papillomaviruses and Darwinian classification: response to van Doorslaer et al. Trends Microbiol. 2011, 19:49-50.
    • (2011) Trends Microbiol. , vol.19 , pp. 49-50
    • Bravo, I.G.1    de Sanjose, S.2    Gottschling, M.3
  • 12
    • 78650324137 scopus 로고    scopus 로고
    • Cervical human papillomavirus prevalence in 5 continents: meta-analysis of 1 million women with normal cytological findings
    • Bruni L., Diaz M., Castellsague X., Ferrer E., Bosch F.X., de Sanjose S. Cervical human papillomavirus prevalence in 5 continents: meta-analysis of 1 million women with normal cytological findings. J. Infect. Dis. 2010, 202:1789-1799.
    • (2010) J. Infect. Dis. , vol.202 , pp. 1789-1799
    • Bruni, L.1    Diaz, M.2    Castellsague, X.3    Ferrer, E.4    Bosch, F.X.5    de Sanjose, S.6
  • 14
    • 83755178892 scopus 로고    scopus 로고
    • Classification and nomenclature system for human alphapapillomavirus variants: general features, nucleotide landmarks and assignment of HPV6 and HPV11 isolates to variant lineages
    • Burk R.D., Chen Z., Harari A., Smith B.C., Kocjan B.J., Maver P.J., Poljak M. Classification and nomenclature system for human alphapapillomavirus variants: general features, nucleotide landmarks and assignment of HPV6 and HPV11 isolates to variant lineages. Acta Dermatovenerol. Alp. Panonica Adriat. 2011, 20:113-123.
    • (2011) Acta Dermatovenerol. Alp. Panonica Adriat. , vol.20 , pp. 113-123
    • Burk, R.D.1    Chen, Z.2    Harari, A.3    Smith, B.C.4    Kocjan, B.J.5    Maver, P.J.6    Poljak, M.7
  • 15
    • 80051594192 scopus 로고    scopus 로고
    • Intratype variations of HPV 31 and 58 in Italian women with abnormal cervical cytology
    • Cento V., Rahmatalla N., Ciccozzi M., Perno C.F., Ciotti M. Intratype variations of HPV 31 and 58 in Italian women with abnormal cervical cytology. J. Med. Virol. 2011, 83:1752-1761.
    • (2011) J. Med. Virol. , vol.83 , pp. 1752-1761
    • Cento, V.1    Rahmatalla, N.2    Ciccozzi, M.3    Perno, C.F.4    Ciotti, M.5
  • 18
    • 59749083343 scopus 로고    scopus 로고
    • Evolutionary dynamics of variant genomes of human papillomavirus types 18, 45, and 97
    • Chen Z., DeSalle R., Schiffman M., Herrero R., Burk R.D. Evolutionary dynamics of variant genomes of human papillomavirus types 18, 45, and 97. J. Virol. 2009, 83:1443-1455.
    • (2009) J. Virol. , vol.83 , pp. 1443-1455
    • Chen, Z.1    DeSalle, R.2    Schiffman, M.3    Herrero, R.4    Burk, R.D.5
  • 24
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: a multiple sequence alignment method with reduced time and space complexity
    • Edgar R.C. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 2004, 5:113.
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1
  • 25
    • 27144493802 scopus 로고    scopus 로고
    • Papillomaviruses: different genes have different histories
    • Garcia-Vallve S., Alonso A., Bravo I.G. Papillomaviruses: different genes have different histories. Trends Microbiol. 2005, 13:514-521.
    • (2005) Trends Microbiol. , vol.13 , pp. 514-521
    • Garcia-Vallve, S.1    Alonso, A.2    Bravo, I.G.3
  • 30
    • 57049094372 scopus 로고    scopus 로고
    • Genomic characterization of two novel reptilian papillomaviruses, Chelonia mydas papillomavirus 1 and Caretta caretta papillomavirus 1
    • Herbst L.H., Lenz J., Van Doorslaer K., Chen Z., Stacy B.A., Wellehan J.F., Manire C.A., Burk R.D. Genomic characterization of two novel reptilian papillomaviruses, Chelonia mydas papillomavirus 1 and Caretta caretta papillomavirus 1. Virology 2009, 383:131-135.
    • (2009) Virology , vol.383 , pp. 131-135
    • Herbst, L.H.1    Lenz, J.2    Van Doorslaer, K.3    Chen, Z.4    Stacy, B.A.5    Wellehan, J.F.6    Manire, C.A.7    Burk, R.D.8
  • 31
    • 68049093036 scopus 로고    scopus 로고
    • Shared and persistent asymptomatic cutaneous human papillomavirus infections in healthy skin
    • Hsu J.Y., Chen A.C., Keleher A., McMillan N.A., Antonsson A. Shared and persistent asymptomatic cutaneous human papillomavirus infections in healthy skin. J. Med. Virol. 2009, 81:1444-1449.
    • (2009) J. Med. Virol. , vol.81 , pp. 1444-1449
    • Hsu, J.Y.1    Chen, A.C.2    Keleher, A.3    McMillan, N.A.4    Antonsson, A.5
  • 32
    • 0028036620 scopus 로고
    • A case of peculiar plantar warts. Human papillomavirus type 60 infection
    • Kashima M., Adachi M., Honda M., Niimura M., Nakabayashi Y. A case of peculiar plantar warts. Human papillomavirus type 60 infection. Arch. Dermatol. 1994, 130:1418-1420.
    • (1994) Arch. Dermatol. , vol.130 , pp. 1418-1420
    • Kashima, M.1    Adachi, M.2    Honda, M.3    Niimura, M.4    Nakabayashi, Y.5
  • 33
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: improvement in accuracy of multiple sequence alignment
    • Katoh K., Kuma K., Toh H., Miyata T. MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res. 2005, 33:511-518.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 511-518
    • Katoh, K.1    Kuma, K.2    Toh, H.3    Miyata, T.4
  • 37
    • 80052595404 scopus 로고    scopus 로고
    • Novel snake papillomavirus does not cluster with other non-mammalian papillomaviruses
    • Lange C.E., Favrot C., Ackermann M., Gull J., Vetsch E., Tobler K. Novel snake papillomavirus does not cluster with other non-mammalian papillomaviruses. Virol. J. 2011, 8:436.
    • (2011) Virol. J. , vol.8 , pp. 436
    • Lange, C.E.1    Favrot, C.2    Ackermann, M.3    Gull, J.4    Vetsch, E.5    Tobler, K.6
  • 44
    • 33751422058 scopus 로고    scopus 로고
    • Isolation and characterization of the first American bottlenose dolphin papillomavirus: Tursiops truncatus papillomavirus type 2
    • Rehtanz M., Ghim S.-J., Rector A., Van Ranst M., Fair P.A., Bossart G.D., Jenson A.B. Isolation and characterization of the first American bottlenose dolphin papillomavirus: Tursiops truncatus papillomavirus type 2. J. Gen. Virol. 2006, 87:3559-3565.
    • (2006) J. Gen. Virol. , vol.87 , pp. 3559-3565
    • Rehtanz, M.1    Ghim, S.-J.2    Rector, A.3    Van Ranst, M.4    Fair, P.A.5    Bossart, G.D.6    Jenson, A.B.7
  • 47
    • 67949094324 scopus 로고    scopus 로고
    • Classification of weakly carcinogenic human papillomavirus types: addressing the limits of epidemiology at the borderline
    • Schiffman M., Clifford G., Buonaguro F.M. Classification of weakly carcinogenic human papillomavirus types: addressing the limits of epidemiology at the borderline. Infect. Agent Cancer 2009, 4:8.
    • (2009) Infect. Agent Cancer , vol.4 , pp. 8
    • Schiffman, M.1    Clifford, G.2    Buonaguro, F.M.3
  • 52
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22:2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 53
    • 77955179934 scopus 로고    scopus 로고
    • MLTreeMap-accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies
    • Stark M., Berger S.A., Stamatakis A., von Mering C. MLTreeMap-accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies. BMC Genomics 2010, 11:461.
    • (2010) BMC Genomics , vol.11 , pp. 461
    • Stark, M.1    Berger, S.A.2    Stamatakis, A.3    von Mering, C.4
  • 54
    • 76949088851 scopus 로고    scopus 로고
    • Association of human papillomavirus 7 with warts in toe webs
    • Sun C., Chen K., Gu H., Chang B., Jiang M. Association of human papillomavirus 7 with warts in toe webs. Br. J. Dermatol. 2009, 162:579-586.
    • (2009) Br. J. Dermatol. , vol.162 , pp. 579-586
    • Sun, C.1    Chen, K.2    Gu, H.3    Chang, B.4    Jiang, M.5
  • 55
    • 0036776446 scopus 로고    scopus 로고
    • Lack of canonical E6 and E7 open reading frames in bird papillomaviruses: Fringilla coelebs papillomavirus and Psittacus erithacus timneh papillomavirus
    • Terai M., DeSalle R., Burk R.D. Lack of canonical E6 and E7 open reading frames in bird papillomaviruses: Fringilla coelebs papillomavirus and Psittacus erithacus timneh papillomavirus. J. Virol. 2002, 76:10020-10023.
    • (2002) J. Virol. , vol.76 , pp. 10020-10023
    • Terai, M.1    DeSalle, R.2    Burk, R.D.3
  • 57
    • 67449088024 scopus 로고    scopus 로고
    • Profile of physical status and gene variation of human papillomavirus 58 genome in cervical cancer
    • Wu E.Q., Zha X., Yu X.H., Zhang G.N., Wu Y.G., Fan Y., Ren Y., Kong L.Q., Kong W. Profile of physical status and gene variation of human papillomavirus 58 genome in cervical cancer. J. Gen. Virol. 2009, 90:1229-1237.
    • (2009) J. Gen. Virol. , vol.90 , pp. 1229-1237
    • Wu, E.Q.1    Zha, X.2    Yu, X.H.3    Zhang, G.N.4    Wu, Y.G.5    Fan, Y.6    Ren, Y.7    Kong, L.Q.8    Kong, W.9
  • 59
    • 70350721798 scopus 로고    scopus 로고
    • Association of HPV16 E6 variants with diagnostic severity in cervical cytology samples of 354 women in a US population
    • Zuna R.E., Moore W.E., Shanesmith R.P., Dunn S.T., Wang S.S., Schiffman M., Blakey G.L., Teel T. Association of HPV16 E6 variants with diagnostic severity in cervical cytology samples of 354 women in a US population. Int. J. Cancer 2009, 125:2609-2613.
    • (2009) Int. J. Cancer , vol.125 , pp. 2609-2613
    • Zuna, R.E.1    Moore, W.E.2    Shanesmith, R.P.3    Dunn, S.T.4    Wang, S.S.5    Schiffman, M.6    Blakey, G.L.7    Teel, T.8
  • 60
    • 0036559896 scopus 로고    scopus 로고
    • Papillomaviruses and cancer: from basic studies to clinical application
    • zur Hausen H. Papillomaviruses and cancer: from basic studies to clinical application. Nat. Rev. Cancer 2002, 2:342-350.
    • (2002) Nat. Rev. Cancer , vol.2 , pp. 342-350
    • zur Hausen, H.1


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