Phylogenetic relationship among East Asian species of the Stegana genus group (Diptera, Drosophilidae)

Molecular Phylogenetics and Evolution

Volumn 66, Issue 1, 2013, Pages 412-416

  Li, Tong ^a   Gao, Jian Jun ^b   Lu, Jin Ming ^a   Ji, Xing Lai ^b   Chen, Hong Wei ^a  

^a SOUTH CHINA AGRICULTURAL UNIVERSITY   (China)

^b YUNNAN UNIVERSITY   (China)

Author keywords

Biogeographical history; Drosophilidae; Molecular phylogeny; Stegana genus group

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; CELL NUCLEUS; CLASSIFICATION; DNA SEQUENCE; DROSOPHILIDAE; FAR EAST; GENE; GENETICS; GEOGRAPHY; MOLECULAR EVOLUTION; PHYLOGENY;

ANIMALS; BAYES THEOREM; CELL NUCLEUS; DNA, MITOCHONDRIAL; DROSOPHILIDAE; EVOLUTION, MOLECULAR; FAR EAST; GENES, INSECT; GEOGRAPHY; MODELS, GENETIC; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

DIPTERA; DROSOPHILIDAE; FAGACEAE; QUERCUS; STEGANA;

EID: 84870240983     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2012.09.004     Document Type: Article

References (23)

1. Cao H.L., Wang X.L., Gao J.J., Stéphane R.P., Watabe H.A., Zhang Y.P., Chen H.W. Phylogeny of the African and Asian Phortica (Drosophilidae) deduced from nuclear and mitochondrial DNA Sequences. Mol. Phylogenet. Evol. 2011, 61:677-685.
2. Chen H.W., Watabe H., Zhang W.X. A new subgenus Parastegana (Allstegana) (Diptera, Drosophilidae), with descriptions of two new species from southwestern China. J. Nat. Hist. 2007, 41:2403-2410.
3. Eriksson, T., 2007. r8s Bootstrap kit. Published by the author.
4. Gao J.J., Hu Y.G., Toda M.J., Katoh T., Tamura K. Phylogenetic relationships between Sophophora and Lordiphosa, with proposition of a hypothesis on the vicariant divergences of tropical lineages between the Old and New Worlds in the family Drosophilidae. Mol. Phylogenet. Evol. 2011, 60:98-107.
5. Grimaldi D.A. A phylogenetic, revised classification of genera in the Drosophilidae (Diptera). Bull. Am. Mus. Nat. Hist. 1990, 197:1-139.
6. Li T., Cao H.Z., Gao J.J., Chen H.W. A revision of the subgenus Stegana (s. str.) (Diptera, Drosophilidae) from mainland China. Zool. J. Linn. Soc. 2010, 158:726-739.
7. Li T., Gao J.J., Chen H.W. Six new species of the genus Pseudostegana (Diptera, Drosophilidae) from the Oriental Region. J. Nat. Hist. 2010, 44:1401-1418.
8. Obbard D.J., Maclennan J., Kim K.W., Rambaut A., O'Grady P.M., Jiggins F.M. Estimating divergence dates and substitution rates in the Drosophila phylogeny. Mol. Biol. Evol. 2012, 10.1093/molbev/mss150.
9. Okada T. Pseudostegana, a new subgenus of the genus Stegana Meigen (Diptera, Drosophilidae). Kontyû 1978, 46:392-399.
10. Otranto D., Stevens J.R., Testini G., Cantacessi C., Máca J. Molecular characterization and phylogenesis of Steganinae (Diptera, Drosophilidae) inferred by the mitochondrial cytochrome c oxidase subunit 1. Med. Vet. Entomol. 2008, 25:37-47.
11. Posada D. JModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
12. Ronquist, F., 1996. DIVA version 1.1. Computer Program and Manual Available by Anonymous FTP from Uppsala University (ftp.uu.se or ftp.systbot.uu.se).
13. Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
14. Sanderson M.J. R8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics 2003, 19:301-302.
15. Sidorenko V.S. Phylogeny of the tribe Steganini Hendel and some related taxa (Diptera, Drosophilidae). Far. Eastern Entomol. 2002, 111:1-20.
16. Tamura K., Subrammanian S., Kumar S. Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks. Mol. Biol. Evol. 2004, 21:36-44.
17. Wiegmann B.M., Trautwein M.D., Winkler I.S., Barr N.B., Kim J.W., Lambkin C., Bertonea M.A., Cassel B.K., Bayless K.M., Heimberg A.M., Wheeler B.M., Peterson Pape T., Sinclair B.J., Skevington J.H., Blagoderov V., Caravas J., Kutty S.N., Schmidt-Ott U., Kampmeier G.E., Thompson F.C., Grimaldi D.A., Beckenbach A.T., Courtney G.W., Friedrich M., Meier R., Yeates D.K. Episodic radiations in the fly tree of life. Proc. Natl. Acad. Sci. USA 2011, 108:5690-5695.
18. Xia X., Xie Z. DAMBE: software package for data analysis in molecular biology and evolution. J. Hered. 2001, 92:371-373.
19. Zachos J., Pagani M., Sloan L., Thomas E., Billups K. Trends, rhythms, and Aberrations in global climate 65 Ma to Present. Science 2001, 292:686-693.
20. Zhang, W.X., 1994. The fauna taxonomy of Drosophilidae in Hengduan Mountains Region and phylogenetic research among species subgroups of Drosophila immigrans species group (Diptera: Drosopihlidae), PhD thesis. Kunming Institute of Zoology, Chinese Academy of Sciences.
21. Zhou Z.K. Origin, phylogeny and dispersal of Quercus from China. Acta Botanica Yunnanica 1992, 14:227-236.
22. Zhou Z.K. The fossil history of Quercus. Acta Botanica Yunnanica 1993, 15:21-33.
23. Zhou Z.K. Fossils of the Fagaceae and their implications in systematics and biogeography. Acta Phytotaxonomica Sinica 1999, 37:369-385.