-
1
-
-
0027965254
-
Rodent L1 evolution has been driven by a single dominant lineage that has repeatedly acquired new transcriptional regulatory sequences
-
Adey NB, Schichman SA, Graham DK, Peterson SN, Edgell MH, Hutchison CA. 1994. Rodent L1 evolution has been driven by a single dominant lineage that has repeatedly acquired new transcriptional regulatory sequences. Mol. Biol. Evol. 11:778-89
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 778-789
-
-
Adey, N.B.1
Schichman, S.A.2
Graham, D.K.3
Peterson, S.N.4
Edgell, M.H.5
Hutchison, C.A.6
-
2
-
-
44849120649
-
Extensive variation between inbred mouse strains due to endogenous L1 retrotransposition
-
Akagi K, Li J, Stephens RM, Volfovsky N, Symer DE. 2008. Extensive variation between inbred mouse strains due to endogenous L1 retrotransposition. Genome Res. 18:869-80
-
(2008)
Genome Res.
, vol.18
, pp. 869-880
-
-
Akagi, K.1
Li, J.2
Stephens, R.M.3
Volfovsky, N.4
Symer, D.E.5
-
3
-
-
0037162885
-
Whole-genome shotgun assembly and analysis of the genome of fugu rubripes
-
Aparicio S, Chapman J, Stupka E, Putnam N, Chia J, et al. 2002. Whole-genome shotgun assembly and analysis of the genome of fugu rubripes. Science 297:1301-10
-
(2002)
Science
, vol.297
, pp. 1301-1310
-
-
Aparicio, S.1
Chapman, J.2
Stupka, E.3
Putnam, N.4
Chia, J.5
-
4
-
-
81855178276
-
Somatic retrotransposition alters the genetic landscape of the human brain
-
Baillie JK, BarnettMW, Upton KR, Gerhardt DJ, Richmond TA, et al. 2011. Somatic retrotransposition alters the genetic landscape of the human brain. Nature 479:534-37
-
(2011)
Nature
, vol.479
, pp. 534-537
-
-
Baillie, J.K.1
Barnett, M.W.2
Upton, K.R.3
Gerhardt, D.J.4
Richmond, T.A.5
-
5
-
-
79956309501
-
The selaginella genome identifies genetic changes associated with the evolution of vascular plants
-
Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, et al. 2011. The selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science 332:960-63
-
(2011)
Science
, vol.332
, pp. 960-963
-
-
Banks, J.A.1
Nishiyama, T.2
Hasebe, M.3
Bowman, J.L.4
Gribskov, M.5
-
6
-
-
62349104354
-
Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes
-
Bartolomé C, Bello X, Maside X. 2009. Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes. Genome Biol. 10:R22
-
(2009)
Genome Biol.
, vol.10
-
-
Bartolomé, C.1
Bello, X.2
Maside, X.3
-
7
-
-
77953880842
-
LINE-1 retrotransposition activity in human genomes
-
Beck CR, Collier P, Macfarlane C, Malig M, Kidd JM, et al. 2010. LINE-1 retrotransposition activity in human genomes. Cell 141:1159-70
-
(2010)
Cell
, vol.141
, pp. 1159-1170
-
-
Beck, C.R.1
Collier, P.2
MacFarlane, C.3
Malig, M.4
Kidd, J.M.5
-
8
-
-
34547471449
-
Recent LTR retrotransposon insertion contrasts with waves of non- LTR insertion since speciation in Drosophila melanogaster
-
Bergman CM, Bensasson D. 2007. Recent LTR retrotransposon insertion contrasts with waves of non- LTR insertion since speciation in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 104:11340-45
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 11340-11345
-
-
Bergman, C.M.1
Bensasson, D.2
-
10
-
-
0020317050
-
The molecular basis of PM hybrid dysgenesis: The role of the P element, a P-strain-specific transposon family
-
Bingham PM, Kidwell MG, Rubin GM. 1982. The molecular basis of PM hybrid dysgenesis: The role of the P element, a P-strain-specific transposon family. Cell 29:995-1004
-
(1982)
Cell
, vol.29
, pp. 995-1004
-
-
Bingham, P.M.1
Kidwell, M.G.2
Rubin, G.M.3
-
12
-
-
0034086210
-
L1 (LINE-1) retrotransposon evolution and amplification in recent human history
-
Boissinot S, Chevret P, Furano AV. 2000. L1 (LINE-1) retrotransposon evolution and amplification in recent human history. Mol. Biol. Evol. 17:915-28
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 915-928
-
-
Boissinot, S.1
Chevret, P.2
Furano, A.V.3
-
13
-
-
0037965788
-
Hot L1s account for the bulk of retrotransposition in the human population
-
Brouha B, Schustak J, Badge RM, Lutz-Prigge S, Farley AH, et al. 2003. Hot L1s account for the bulk of retrotransposition in the human population. Proc. Natl. Acad. Sci. USA 100:5280-85
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 5280-5285
-
-
Brouha, B.1
Schustak, J.2
Badge, R.M.3
Lutz-Prigge, S.4
Farley, A.H.5
-
14
-
-
0026940433
-
Tourist: A large family of small inverted repeat elements frequently associated with maize genes
-
Bureau TE, Wessler SR. 1992. Tourist: A large family of small inverted repeat elements frequently associated with maize genes. Plant Cell Online 4:1283-94
-
(1992)
Plant Cell Online
, vol.4
, pp. 1283-1294
-
-
Bureau, T.E.1
Wessler, S.R.2
-
15
-
-
34247344319
-
Retrotransposable elements and human disease
-
Callinan PA, Batzer MA. 2006. Retrotransposable elements and human disease. Genome Dis. 1:104-15
-
(2006)
Genome Dis.
, vol.1
, pp. 104-115
-
-
Callinan, P.A.1
Batzer, M.A.2
-
16
-
-
40849098032
-
Loss of LINE-1 activity in the megabats
-
Cantrell MA, Scott LA, Brown CJ, Martinez AR, Wichman HA. 2008. Loss of LINE-1 activity in the megabats. Genetics 178:393-404
-
(2008)
Genetics
, vol.178
, pp. 393-404
-
-
Cantrell, M.A.1
Scott, L.A.2
Brown, C.J.3
Martinez, A.R.4
Wichman, H.A.5
-
17
-
-
0025013271
-
Identification of a potential RNA intermediate for transposition of the LINE-like element i factor in Drosophila melanogaster
-
Chaboissier M, Busseau I, Prosser J, Finnegan D, Bucheton A. 1990. Identification of a potential RNA intermediate for transposition of the LINE-like element I factor in Drosophila melanogaster. EMBO J. 9:3557
-
(1990)
EMBO J.
, vol.9
, pp. 3557
-
-
Chaboissier, M.1
Busseau, I.2
Prosser, J.3
Finnegan, D.4
Bucheton, A.5
-
18
-
-
77950080387
-
The dynamic genome of hydra
-
Chapman JA, Kirkness EF, Simakov O, Hampson SE, Mitros T, et al. 2010. The dynamic genome of hydra. Nature 464:592-96
-
(2010)
Nature
, vol.464
, pp. 592-596
-
-
Chapman, J.A.1
Kirkness, E.F.2
Simakov, O.3
Hampson, S.E.4
Mitros, T.5
-
19
-
-
22844438250
-
A systematic analysis of LINE-1 endonucleasedependent retrotranspositional events causing human genetic disease
-
Chen JM, Stenson PD, Cooper DN, Férec C. 2005. A systematic analysis of LINE-1 endonucleasedependent retrotranspositional events causing human genetic disease. Hum. Genet. 117:411-27
-
(2005)
Hum. Genet.
, vol.117
, pp. 411-427
-
-
Chen, J.M.1
Stenson, P.D.2
Cooper, D.N.3
Férec, C.4
-
20
-
-
78649623426
-
A novel web-based TinT application and the chronology of the primate Alu retroposon activity
-
Churakov G, Grundmann N, Kuritzin A, Brosius J, Makalowski W, Schmitz J. 2010. A novel web-based TinT application and the chronology of the primate Alu retroposon activity. BMC Evol. Biol. 10:376
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 376
-
-
Churakov, G.1
Grundmann, N.2
Kuritzin, A.3
Brosius, J.4
Makalowski, W.5
Schmitz, J.6
-
21
-
-
0023056233
-
Transposable elements generate novel spatial patterns of gene expression in antirrhinum majus
-
Coen ES, Carpenter R, Martin C. 1986. Transposable elements generate novel spatial patterns of gene expression in antirrhinum majus. Cell 47:285-96
-
(1986)
Cell
, vol.47
, pp. 285-296
-
-
Coen, E.S.1
Carpenter, R.2
Martin, C.3
-
22
-
-
70349318211
-
The impact of retrotransposons on human genome evolution
-
Cordaux R, Batzer MA. 2009. The impact of retrotransposons on human genome evolution. Nat. Rev. Genet. 10:691-703
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 691-703
-
-
Cordaux, R.1
Batzer, M.A.2
-
25
-
-
33845296602
-
Identification of an infectious progenitor for the multiple-copy HERV-K human endogenous retroelements
-
Dewannieux M, Harper F, Richaud A, Letzelter C, Ribet D, et al. 2006. Identification of an infectious progenitor for the multiple-copy HERV-K human endogenous retroelements. Genome Res. 16:1548-56
-
(2006)
Genome Res.
, vol.16
, pp. 1548-1556
-
-
Dewannieux, M.1
Harper, F.2
Richaud, A.3
Letzelter, C.4
Ribet, D.5
-
26
-
-
72449132309
-
Human genomics: The genome finishers
-
Dolgin E. 2009. Human genomics: the genome finishers. Nature 462:843-45
-
(2009)
Nature
, vol.462
, pp. 843-845
-
-
Dolgin, E.1
-
27
-
-
0029888892
-
Rates ofmovement of transposable elements in Drosophila melanogaster
-
Domínguez A, Albornoz J. 1996. Rates ofmovement of transposable elements in Drosophila melanogaster. MGG 251:130-38
-
(1996)
MGG
, vol.251
, pp. 130-138
-
-
Domínguez, A.1
Albornoz, J.2
-
28
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
Durbin RM, Altshuler DL, Abecasis GR, Bentley DR, Chakravarti A, et al. 2010. A map of human genome variation from population-scale sequencing. Nature 467:1061-73
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
Durbin, R.M.1
Altshuler, D.L.2
Abecasis, G.R.3
Bentley, D.R.4
Chakravarti, A.5
-
29
-
-
0021248573
-
High-frequency excision of transposable element tc 1 in the nematode Caenorhabditis elegans is limited to somatic cells
-
Emmons SW, Yesner L. 1984. High-frequency excision of transposable element tc 1 in the nematode Caenorhabditis elegans is limited to somatic cells. Cell 36:599
-
(1984)
Cell
, vol.36
, pp. 599
-
-
Emmons, S.W.1
Yesner, L.2
-
30
-
-
0026942288
-
The origin of P elements in Drosophila melanogaster
-
Engels WR. 1992. The origin of P elements in Drosophila melanogaster. Bioessays 14:681-86
-
(1992)
Bioessays
, vol.14
, pp. 681-686
-
-
Engels, W.R.1
-
31
-
-
77955160719
-
High-throughput sequencing reveals extensive variation in humanspecific L1 content in individual human genomes
-
Ewing AD, Kazazian HH. 2010. High-throughput sequencing reveals extensive variation in humanspecific L1 content in individual human genomes. Genome Res. 20:1262-70
-
(2010)
Genome Res.
, vol.20
, pp. 1262-1270
-
-
Ewing, A.D.1
Kazazian, H.H.2
-
32
-
-
79957933956
-
Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans
-
Ewing AD, Kazazian HH. 2010. Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans. Genome Res. 6:985-90
-
(2010)
Genome Res.
, vol.6
, pp. 985-990
-
-
Ewing, A.D.1
Kazazian, H.H.2
-
33
-
-
76549117971
-
Transposon-induced gene activation as a mechanism generating cluster shape somatic variation in grapevine
-
Fernandez L, Torregrosa L, Segura V, Bouquet A, Martinez-Zapater JM. 2010. Transposon-induced gene activation as a mechanism generating cluster shape somatic variation in grapevine. Plant J. 61:545- 57
-
(2010)
Plant J.
, vol.61
, pp. 545-557
-
-
Fernandez, L.1
Torregrosa, L.2
Segura, V.3
Bouquet, A.4
Martinez-Zapater, J.M.5
-
34
-
-
37549029474
-
DNA transposons and the evolution of eukaryotic genomes
-
Feschotte C, Pritham EJ. 2007. DNA transposons and the evolution of eukaryotic genomes. Annu. Rev. Genet. 41:331-68
-
(2007)
Annu. Rev. Genet.
, vol.41
, pp. 331-368
-
-
Feschotte, C.1
Pritham, E.J.2
-
36
-
-
0348048755
-
L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish
-
Furano AV, Duvernell DD, Boissinot S. 2004. L1 (LINE-1) retrotransposon diversity differs dramatically between mammals and fish. Trends Genet. 20:9-14
-
(2004)
Trends Genet.
, vol.20
, pp. 9-14
-
-
Furano, A.V.1
Duvernell, D.D.2
Boissinot, S.3
-
38
-
-
34447327537
-
LINE-1 retrotransposition in human embryonic stem cells
-
Garcia-Perez JL, Marchetto MCN, Muotri AR, Coufal NG, Gage FH, et al. 2007. LINE-1 retrotransposition in human embryonic stem cells. Hum. Mol. Genet. 16:1569-77
-
(2007)
Hum. Mol. Genet.
, vol.16
, pp. 1569-1577
-
-
Garcia-Perez, J.L.1
Marchetto, M.C.N.2
Muotri, A.R.3
Coufal, N.G.4
Gage, F.H.5
-
39
-
-
33846839236
-
Ashbya genome database 3.0: A cross-species genome and transcriptome browser for yeast biologists
-
Gattiker A, Rischatsch R, Demougin P, Voegeli S, Dietrich FS, et al. 2007. Ashbya genome database 3.0: a cross-species genome and transcriptome browser for yeast biologists. BMC Genomics 8:9
-
(2007)
BMC Genomics
, vol.8
, pp. 9
-
-
Gattiker, A.1
Rischatsch, R.2
Demougin, P.3
Voegeli, S.4
Dietrich, F.S.5
-
40
-
-
1842684068
-
Genome sequence of the brown norway rat yields insights into mammalian evolution
-
Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, et al. 2004. Genome sequence of the brown norway rat yields insights into mammalian evolution. Nature 428:493-521
-
(2004)
Nature
, vol.428
, pp. 493-521
-
-
Gibbs, R.A.1
Weinstock, G.M.2
Metzker, M.L.3
Muzny, D.M.4
Sodergren, E.J.5
-
41
-
-
34547609849
-
Evolutionary history of mammalian transposons determined by genome-wide defragmentation
-
Giordano J, Ge Y, Gelfand Y, Abrusán G, Benson G, Warburton PE. 2007. Evolutionary history of mammalian transposons determined by genome-wide defragmentation. PLoS Computat. Biol. 3:e137
-
(2007)
PLoS Computat. Biol.
, vol.3
-
-
Giordano, J.1
Ge, Y.2
Gelfand, Y.3
Abrusán, G.4
Benson, G.5
Warburton, P.E.6
-
42
-
-
54949129791
-
High rate of recent transposable element-induced adaptation in Drosophila melanogaster
-
González J, Lenkov K, Lipatov M, Macpherson JM, Petrov DA. 2008. High rate of recent transposable element-induced adaptation in Drosophila melanogaster. PLoS Biol. 6:e251
-
(2008)
PLoS Biol.
, vol.6
-
-
González, J.1
Lenkov, K.2
Lipatov, M.3
MacPherson, J.M.4
Petrov, D.A.5
-
43
-
-
68949203612
-
A recent adaptive transposable element insertion near highly conserved developmental loci in Drosophila melanogaster
-
Gonzalez J, Macpherson JM, Petrov DA. 2009. A recent adaptive transposable element insertion near highly conserved developmental loci in Drosophila melanogaster. Mol. Biol. Evol. 26:1949-61
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 1949-1961
-
-
Gonzalez, J.1
MacPherson, J.M.2
Petrov, D.A.3
-
45
-
-
23844436019
-
Extinction of LINE-1 activity coincident with a major mammalian radiation in rodents
-
Grahn R, Rinehart T, Cantrell M, Wichman H. 2005. Extinction of LINE-1 activity coincident with a major mammalian radiation in rodents. Cytogenet. Genome Res. 110:407-15
-
(2005)
Cytogenet. Genome Res.
, vol.110
, pp. 407-415
-
-
Grahn, R.1
Rinehart, T.2
Cantrell, M.3
Wichman, H.4
-
46
-
-
17844406653
-
A novel class of helitron-related transposable elements in maize contain portions of multiple pseudogenes
-
Gupta S, Gallavotti A, Stryker GA, Schmidt RJ, Lal SK. 2005. A novel class of helitron-related transposable elements in maize contain portions of multiple pseudogenes. Plant Mol. Biol. 57:115-27
-
(2005)
Plant Mol. Biol.
, vol.57
, pp. 115-127
-
-
Gupta, S.1
Gallavotti, A.2
Stryker, G.A.3
Schmidt, R.J.4
Lal, S.K.5
-
47
-
-
77956862387
-
SVA retrotransposons: Evolution and genetic instability
-
Hancks DC, Kazazian HH Jr. 2010. SVA retrotransposons: evolution and genetic instability. Semin. Cancer Biol. 20:234-45
-
(2010)
Semin. Cancer Biol.
, vol.20
, pp. 234-245
-
-
Hancks, D.C.1
Kazazian Jr., H.H.2
-
48
-
-
80051702066
-
Retrotransposition ofmarked SVA elements by human L1s in cultured cells
-
Hancks DC, Goodier JL, Mandal PK, Cheung LE, KazazianHHJr. 2011. Retrotransposition ofmarked SVA elements by human L1s in cultured cells. Hum. Mol. Genet. 20:3386-400
-
(2011)
Hum. Mol. Genet.
, vol.20
, pp. 3386-3400
-
-
Hancks, D.C.1
Goodier, J.L.2
Mandal, P.K.3
Cheung, L.E.4
Kazazian Jr., H.H.5
-
49
-
-
0030945064
-
Natural variation and copulatory plug formation in Caenorhabditis elegans
-
Hodgkin J, Doniach T. 1997. Natural variation and copulatory plug formation in Caenorhabditis elegans. Genetics 146:149-164
-
(1997)
Genetics
, vol.146
, pp. 149-164
-
-
Hodgkin, J.1
Doniach, T.2
-
50
-
-
35848941492
-
Population and evolutionary dynamics of helitron transposable elements in Arabidopsis thaliana
-
Hollister JD, Gaut BS. 2007. Population and evolutionary dynamics of helitron transposable elements in Arabidopsis thaliana. Mol. Biol. Evol. 24:2515-24
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 2515-2524
-
-
Hollister, J.D.1
Gaut, B.S.2
-
51
-
-
68149144366
-
Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
-
Hollister JD, Gaut BS. 2009. Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression. Genome Res. 19:1419-28
-
(2009)
Genome Res.
, vol.19
, pp. 1419-1428
-
-
Hollister, J.D.1
Gaut, B.S.2
-
52
-
-
79952303685
-
Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata
-
Hollister JD, Smith LM, Guo YL, Ott F, Weigel D, Gaut BS. 2011. Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata. Proc. Natl. Acad. Sci. USA 108:2322-27
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 2322-2327
-
-
Hollister, J.D.1
Smith, L.M.2
Guo, Y.L.3
Ott, F.4
Weigel, D.5
Gaut, B.S.6
-
53
-
-
84975806579
-
Alu repeat discovery and characterization within human genomes
-
Hormozdiari F, Alkan C, Ventura M, Hajirasouliha I, Malig M, et al. 2010. Alu repeat discovery and characterization within human genomes. Genome Res. 21:840-49
-
(2010)
Genome Res.
, vol.21
, pp. 840-849
-
-
Hormozdiari, F.1
Alkan, C.2
Ventura, M.3
Hajirasouliha, I.4
Malig, M.5
-
54
-
-
1842687155
-
Mutation accumulation and the effect of copia insertions in Drosophila melanogaster
-
Houle D, Nuzhdin SV. 2004. Mutation accumulation and the effect of copia insertions in Drosophila melanogaster. Genet. Res. 83:7-18
-
(2004)
Genet. Res.
, vol.83
, pp. 7-18
-
-
Houle, D.1
Nuzhdin, S.V.2
-
55
-
-
77953892366
-
Mobile interspersed repeats are major structural variants in the human genome
-
Huang CRL, Schneider AM, Lu Y, Niranjan T, Shen P, et al. 2010. Mobile interspersed repeats are major structural variants in the human genome. Cell 141:1171-82
-
(2010)
Cell
, vol.141
, pp. 1171-1182
-
-
Huang, C.R.L.1
Schneider, A.M.2
Lu, Y.3
Niranjan, T.4
Shen, P.5
-
56
-
-
55549123888
-
Genome-wide analysis of transposon insertion polymorphisms reveals intraspecific variation in cultivated rice
-
Huang X, Lu G, Zhao Q, Liu X, Han B. 2008. Genome-wide analysis of transposon insertion polymorphisms reveals intraspecific variation in cultivated rice. Plant Physiol. 148:25-40
-
(2008)
Plant Physiol.
, vol.148
, pp. 25-40
-
-
Huang, X.1
Lu, G.2
Zhao, Q.3
Liu, X.4
Han, B.5
-
57
-
-
77953889472
-
Natural mutagenesis of human genomes by endogenous retrotransposons
-
Iskow RC, McCabe MT, Mills RE, Torene S, Pittard WS, et al. 2010. Natural mutagenesis of human genomes by endogenous retrotransposons. Cell 141:1253-61
-
(2010)
Cell
, vol.141
, pp. 1253-1261
-
-
Iskow, R.C.1
McCabe, M.T.2
Mills, R.E.3
Torene, S.4
Pittard, W.S.5
-
58
-
-
84871342778
-
An active DNA transposon family in rice
-
Jiang N, Bao Z, Zhang X, Hirochika H, Eddy SR, et al. 1986. An active DNA transposon family in rice. J. Comp. Physiol. A 159:801-11
-
(1986)
J. Comp. Physiol. A
, vol.159
, pp. 801-811
-
-
Jiang, N.1
Bao, Z.2
Zhang, X.3
Hirochika, H.4
Eddy, S.R.5
-
59
-
-
66149168927
-
L1 retrotransposition occurs mainly in embryogenesis and creates somatic mosaicism
-
Kano H, Godoy I, Courtney C, VetterMR, Gerton GL, et al. 2009. L1 retrotransposition occurs mainly in embryogenesis and creates somatic mosaicism. Genes Dev. 23:1303-12
-
(2009)
Genes Dev.
, vol.23
, pp. 1303-1312
-
-
Kano, H.1
Godoy, I.2
Courtney, C.3
Vetter, M.R.4
Gerton, G.L.5
-
61
-
-
34848876954
-
Helitrons on a roll: Eukaryotic rolling-circle transposons
-
Kapitonov VV, Jurka J. 2007. Helitrons on a roll: eukaryotic rolling-circle transposons. Trends Genet. 23:521-29
-
(2007)
Trends Genet.
, vol.23
, pp. 521-529
-
-
Kapitonov, V.V.1
Jurka, J.2
-
63
-
-
0023867459
-
Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man
-
Kazazian HH, Wong C, Youssoufian H, Scott AF, Phillips DG, Antonarakis SE. 1988. Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man. Nature 332:164-66
-
(1988)
Nature
, vol.332
, pp. 164-166
-
-
Kazazian, H.H.1
Wong, C.2
Youssoufian, H.3
Scott, A.F.4
Phillips, D.G.5
Antonarakis, S.E.6
-
64
-
-
0034160156
-
Transposable elements and host genome evolution
-
Kidwell MG, Lisch DR. 2000. Transposable elements and host genome evolution. Trends Ecol. Evol. 15:95-99
-
(2000)
Trends Ecol. Evol.
, vol.15
, pp. 95-99
-
-
Kidwell, M.G.1
Lisch, D.R.2
-
65
-
-
77952299411
-
On the estimation of the insertion time of LTR retrotransposable elements
-
Kijima TE, Innan H. 2010. On the estimation of the insertion time of LTR retrotransposable elements. Mol. Biol. Evol. 27:896-904
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 896-904
-
-
Kijima, T.E.1
Innan, H.2
-
66
-
-
0028053175
-
Retroviruses in invertebrates: The gypsy retrotransposon is apparently an infectious retrovirus of Drosophila melanogaster
-
Kim A, Terzian C, Santamaria P, Pélisson A, Purd'Homme N, Bucheton A. 1994. Retroviruses in invertebrates: the gypsy retrotransposon is apparently an infectious retrovirus of Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 91:1285-89
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 1285-1289
-
-
Kim, A.1
Terzian, C.2
Santamaria, P.3
Pélisson, A.4
Purd'Homme, N.5
Bucheton, A.6
-
67
-
-
39149083079
-
Functional endogenous LINE-1 retrotransposons are expressed and mobilized in rat chloroleukemia cells
-
Kirilyuk A, Tolstonog GV, Damert A, Held U, Hahn S, et al. 2008. Functional endogenous LINE-1 retrotransposons are expressed and mobilized in rat chloroleukemia cells. Nucleic Acids Res. 36:648-65
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 648-665
-
-
Kirilyuk, A.1
Tolstonog, G.V.2
Damert, A.3
Held, U.4
Hahn, S.5
-
68
-
-
2342648914
-
Retrotransposon-induced mutations in grape skin color
-
Kobayashi S, Goto-Yamamoto N, HirochikaH. 2004. Retrotransposon-induced mutations in grape skin color. Science 304:982
-
(2004)
Science
, vol.304
, pp. 982
-
-
Kobayashi, S.1
Goto-Yamamoto, N.2
Hirochika, H.3
-
69
-
-
33846897374
-
Identification and characterization of novel polymorphic LINE-1 insertions through comparison of two human genome sequence assemblies
-
KonkelMK, Wang J, Liang P, BatzerMA. 2007. Identification and characterization of novel polymorphic LINE-1 insertions through comparison of two human genome sequence assemblies. Gene 390:28-38
-
(2007)
Gene
, vol.390
, pp. 28-38
-
-
Konkel, M.K.1
Wang, J.2
Liang, P.3
Batzer, M.A.4
-
71
-
-
21144454436
-
Gene movement by helitron transposons contributes to the haplotype variability of maize
-
Lai J, Li Y, Messing J, Dooner HK. 2005. Gene movement by helitron transposons contributes to the haplotype variability of maize. Proc. Natl. Acad. Sci. USA 102:9068
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 9068
-
-
Lai, J.1
Li, Y.2
Messing, J.3
Dooner, H.K.4
-
72
-
-
84875439282
-
Helitrons: Their impact on maize genome evolution and diversity
-
Lal SK, Georgelis N, Hannah CL. 2009. Helitrons: their impact on maize genome evolution and diversity. Handbook Maize III:329-39
-
(2009)
Handbook Maize
, vol.3
, pp. 329-339
-
-
Lal, S.K.1
Georgelis, N.2
Hannah, C.L.3
-
73
-
-
0037327353
-
The maize genome contains a helitron insertion
-
Lal SK, Giroux MJ, Brendel V, Vallejos CE, Hannah LC. 2003. The maize genome contains a helitron insertion. Plant Cell Online 15:381-91
-
(2003)
Plant Cell Online
, vol.15
, pp. 381-391
-
-
Lal, S.K.1
Giroux, M.J.2
Brendel, V.3
Vallejos, C.E.4
Hannah, L.C.5
-
74
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. 2001. Initial sequencing and analysis of the human genome. Nature 409:860-921
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
-
75
-
-
0022549191
-
Tissue specificity of Drosophila P element transposition is regulated at the level of mRNA splicing
-
Laski FA, Rio DC, Rubin GM. 1986. Tissue specificity of Drosophila P element transposition is regulated at the level of mRNA splicing. Cell 44:7-19
-
(1986)
Cell
, vol.44
, pp. 7-19
-
-
Laski, F.A.1
Rio, D.C.2
Rubin, G.M.3
-
76
-
-
0036229474
-
Ty1 defect in proteolysis at high temperature
-
Lawler JF Jr, Haeusser DP, Dull A, Boeke JD, Keeney JB. 2002. Ty1 defect in proteolysis at high temperature. J. Virol. 76:4233-40
-
(2002)
J. Virol.
, vol.76
, pp. 4233-4240
-
-
Lawler Jr., J.F.1
Haeusser, D.P.2
Dull, A.3
Boeke, J.D.4
Keeney, J.B.5
-
77
-
-
77951562146
-
Transposable elements in natural populations of Drosophila melanogaster
-
Lee YCG, Langley CH. 2010. Transposable elements in natural populations of Drosophila melanogaster. Philos. Trans. R. Soc. B: Biol. Sci. 365:1219-28
-
(2010)
Philos. Trans. R. Soc. B: Biol. Sci.
, vol.365
, pp. 1219-1228
-
-
Lee, Y.C.G.1
Langley, C.H.2
-
78
-
-
0021162279
-
Effects of transposable element insertions on RNA encoded by the white gene of Drosophila
-
Levis R, O'Hare K, Rubin GM. 1984. Effects of transposable element insertions on RNA encoded by the white gene of Drosophila. Cell 38:471-81
-
(1984)
Cell
, vol.38
, pp. 471-481
-
-
Levis, R.1
O'Hare, K.2
Rubin, G.M.3
-
79
-
-
84898700125
-
Mutator and MULE transposons
-
Lisch D, Jiang N. 2009. Mutator and MULE transposons. Handbook Maize III: 277-306
-
(2009)
Handbook Maize
, vol.3
, pp. 277-306
-
-
Lisch, D.1
Jiang, N.2
-
80
-
-
44349148619
-
Revisiting horizontal transfer of transposable elements in Drosophila
-
Loreto E, Carareto C, Capy P. 2008. Revisiting horizontal transfer of transposable elements in Drosophila. Heredity 100:545-54
-
(2008)
Heredity
, vol.100
, pp. 545-554
-
-
Loreto, E.1
Carareto, C.2
Capy, P.3
-
81
-
-
33645757337
-
Retroviral elements and their hosts: Insertional mutagenesis in the mouse germ line
-
Maksakova IA, RomanishMT, Gagnier L, Dunn CA, VanDeLagemaat LN, Mager DL. 2006. Retroviral elements and their hosts: insertional mutagenesis in the mouse germ line. PLoS Genet. 2:e2
-
(2006)
PLoS Genet.
, vol.2
-
-
Maksakova, I.A.1
Romanish, M.T.2
Gagnier, L.3
Dunn, C.A.4
Vandelagemaat, L.N.5
Mager, D.L.6
-
82
-
-
70350504436
-
A transposon-induced epigenetic change leads to sex determination in melon
-
Martin A, Troadec C, Boualem A, Rajab M, Fernandez R, et al. 2009. A transposon-induced epigenetic change leads to sex determination in melon. Nature 461:1135-38
-
(2009)
Nature
, vol.461
, pp. 1135-1138
-
-
Martin, A.1
Troadec, C.2
Boualem, A.3
Rajab, M.4
Fernandez, R.5
-
83
-
-
34347353237
-
Copy-number variation and association studies of human disease
-
McCarroll SA, Altshuler DM. 2007. Copy-number variation and association studies of human disease. Nat. Genet. 39:S37-42
-
(2007)
Nat. Genet.
, vol.39
-
-
McCarroll, S.A.1
Altshuler, D.M.2
-
85
-
-
0026503996
-
Disruption of the APC gene by a retrotransposal insertion of L1 sequence in a colon cancer
-
Miki Y, Nishisho I, Horii A, Miyoshi Y, Utsunomiya J, et al. 1992. Disruption of the APC gene by a retrotransposal insertion of L1 sequence in a colon cancer. Cancer Res. 52:643
-
(1992)
Cancer Res.
, vol.52
, pp. 643
-
-
Miki, Y.1
Nishisho, I.2
Horii, A.3
Miyoshi, Y.4
Utsunomiya, J.5
-
86
-
-
33645464594
-
Recently mobilized transposons in the human and chimpanzee genomes
-
Mills RE, Bennett EA, Iskow RC, Luttig CT, Tsui C, et al. 2006. Recently mobilized transposons in the human and chimpanzee genomes. Am. J. Hum. Genet. 78:671-79
-
(2006)
Am. J. Hum. Genet.
, vol.78
, pp. 671-679
-
-
Mills, R.E.1
Bennett, E.A.2
Iskow, R.C.3
Luttig, C.T.4
Tsui, C.5
-
87
-
-
0030606320
-
High frequency retrotransposition in cultured mammalian cells
-
Moran JV, Holmes SE, Naas TP, DeBerardinis RJ, Boeke JD, Kazazian HH. 1996. High frequency retrotransposition in cultured mammalian cells. Cell 87:917-27
-
(1996)
Cell
, vol.87
, pp. 917-927
-
-
Moran, J.V.1
Holmes, S.E.2
Naas, T.P.3
Deberardinis, R.J.4
Boeke, J.D.5
Kazazian, H.H.6
-
88
-
-
25144488228
-
Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize
-
Morgante M, Brunner S, Pea G, Fengler K, Zuccolo A, Rafalski A. 2005. Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize. Nat. Genet. 37:997-1002
-
(2005)
Nat. Genet.
, vol.37
, pp. 997-1002
-
-
Morgante, M.1
Brunner, S.2
Pea, G.3
Fengler, K.4
Zuccolo, A.5
Rafalski, A.6
-
89
-
-
33845189717
-
Dramatic amplification of a rice transposable element during recent domestication
-
Naito K, Cho E, Yang G, Campbell MA, Yano K, et al. 2006. Dramatic amplification of a rice transposable element during recent domestication. Proc. Natl. Acad. Sci. USA 103:17620
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 17620
-
-
Naito, K.1
Cho, E.2
Yang, G.3
Campbell, M.A.4
Yano, K.5
-
90
-
-
33644822604
-
Two different transposable elements inserted in flavonoid 3-, 5-hydroxylase gene contribute to pink flower coloration in Gentiana scabra
-
Nakatsuka T, Nishihara M, Mishiba K, Hirano H, Yamamura S. 2006. Two different transposable elements inserted in flavonoid 3-, 5-hydroxylase gene contribute to pink flower coloration in Gentiana scabra. Mol. Genet. Genomics 275:231-41
-
(2006)
Mol. Genet. Genomics
, vol.275
, pp. 231-241
-
-
Nakatsuka, T.1
Nishihara, M.2
Mishiba, K.3
Hirano, H.4
Yamamura, S.5
-
91
-
-
0036076073
-
Genomic evolution of the long terminal repeat retrotransposons in hemiascomycetous yeasts
-
Neuvéglise C, Feldmann H, Bon E, Gaillardin C. 2002. Genomic evolution of the long terminal repeat retrotransposons in hemiascomycetous yeasts. Genome Res. 12:930-43
-
(2002)
Genome Res.
, vol.12
, pp. 930-943
-
-
Neuvéglise, C.1
Feldmann, H.2
Bon, E.3
Gaillardin, C.4
-
92
-
-
67749095911
-
The evolutionary dynamics of autonomous non-LTR retrotransposons in the lizard Anolis carolinensis showsmore similarity to fish than mammals
-
Novick PA, Basta H, Floumanhaft M, McClure MA, Boissinot S. 2009. The evolutionary dynamics of autonomous non-LTR retrotransposons in the lizard Anolis carolinensis showsmore similarity to fish than mammals. Mol. Biol. Evol. 26:1811-22
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 1811-1822
-
-
Novick, P.A.1
Basta, H.2
Floumanhaft, M.3
McClure, M.A.4
Boissinot, S.5
-
93
-
-
79952274187
-
The evolution and diversity of DNA transposons in the genome of the lizard Anolis carolinensis
-
Novick PA, Smith JD, Floumanhaft M, Ray DA, Boissinot S. 2011. The evolution and diversity of DNA transposons in the genome of the lizard Anolis carolinensis. Genome Biol. Evol. 3:1-14
-
(2011)
Genome Biol. Evol.
, vol.3
, pp. 1-14
-
-
Novick, P.A.1
Smith, J.D.2
Floumanhaft, M.3
Ray, D.A.4
Boissinot, S.5
-
94
-
-
0029181962
-
The genomic rate of transposable element movement in Drosophila melanogaster
-
Nuzhdin SV, Mackay TF. 1995. The genomic rate of transposable element movement in Drosophila melanogaster. Mol. Biol. Evol. 12:180-81
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 180-181
-
-
Nuzhdin, S.V.1
MacKay, T.F.2
-
95
-
-
55949134735
-
Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods
-
Pace JK, Gilbert C, Clark MS, Feschotte C. 2008. Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods. Proc. Natl. Acad. Sci. USA 105:17023-28
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 17023-17028
-
-
Pace, J.K.1
Gilbert, C.2
Clark, M.S.3
Feschotte, C.4
-
96
-
-
50049085799
-
Molecular basis of the copulatory plug polymorphism in Caenorhabditis elegans
-
Palopoli MF, Rockman MV, TinMaung A, Ramsay C, Curwen S, et al. 2008. Molecular basis of the copulatory plug polymorphism in Caenorhabditis elegans. Nature 454:1019-22
-
(2008)
Nature
, vol.454
, pp. 1019-1022
-
-
Palopoli, M.F.1
Rockman, M.V.2
Tinmaung, A.3
Ramsay, C.4
Curwen, S.5
-
97
-
-
28744453801
-
Insertion bias and purifying selection of retrotransposons in the Arabidopsis thaliana genome
-
Pereira V. 2004. Insertion bias and purifying selection of retrotransposons in the Arabidopsis thaliana genome. Genome Biol. 5:R79
-
(2004)
Genome Biol.
, vol.5
-
-
Pereira, V.1
-
98
-
-
0036811729
-
Rates of R1 and R2 retrotransposition and elimination from the rDNA locus of Drosophila melanogaster
-
Perez-Gonzalez CE, Eickbush TH. 2002. Rates of R1 and R2 retrotransposition and elimination from the rDNA locus of Drosophila melanogaster. Genetics 162:799
-
(2002)
Genetics
, vol.162
, pp. 799
-
-
Perez-Gonzalez, C.E.1
Eickbush, T.H.2
-
99
-
-
66249131678
-
Identification of an active LTR retrotransposon in rice
-
Picault N, Chaparro C, Piegu B, Stenger W, Formey D, et al. 2009. Identification of an active LTR retrotransposon in rice. Plant J. 58:754-65
-
(2009)
Plant J.
, vol.58
, pp. 754-765
-
-
Picault, N.1
Chaparro, C.2
Piegu, B.3
Stenger, W.4
Formey, D.5
-
100
-
-
67349113896
-
The evolution of two partner LINE/SINE families and a full-length chromodomain-containing Ty3/Gypsy LTR element in the first reptilian genome of Anolis carolinensis
-
Piskurek O, Nishihara H, Okada N. 2009. The evolution of two partner LINE/SINE families and a full-length chromodomain-containing Ty3/Gypsy LTR element in the first reptilian genome of Anolis carolinensis. Gene 441:111-18
-
(2009)
Gene
, vol.441
, pp. 111-118
-
-
Piskurek, O.1
Nishihara, H.2
Okada, N.3
-
101
-
-
0142026172
-
Vertebrate helentrons and other novel helitrons
-
Poulter R, Goodwin TJD, Butler MI. 2003. Vertebrate helentrons and other novel helitrons. Gene 313:201-12
-
(2003)
Gene
, vol.313
, pp. 201-212
-
-
Poulter, R.1
Goodwin, T.J.D.2
Butler, M.I.3
-
102
-
-
33846931279
-
Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus
-
Pritham EJ, Feschotte C. 2007. Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus. Proc. Natl. Acad. Sci. USA 104:1895-900
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 1895-1900
-
-
Pritham, E.J.1
Feschotte, C.2
-
103
-
-
84857888415
-
The non-autonomous retrotransposon SVA is trans-mobilized by the human LINE-1 protein machinery
-
Raiz J, Damert A, Chira S, Held U, Klawitter S, et al. 2012. The non-autonomous retrotransposon SVA is trans-mobilized by the human LINE-1 protein machinery. Nucleic Acids Res. 40:1666-83
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 1666-1683
-
-
Raiz, J.1
Damert, A.2
Chira, S.3
Held, U.4
Klawitter, S.5
-
104
-
-
77956388027
-
The structure, organization and radiation of sadhu non-long terminal repeat retroelements in Arabidopsis species
-
Rangwala SH, Richards EJ. 2010. The structure, organization and radiation of sadhu non-long terminal repeat retroelements in Arabidopsis species. Mob. DNA 1:10
-
(2010)
Mob. DNA
, vol.1
, pp. 10
-
-
Rangwala, S.H.1
Richards, E.J.2
-
105
-
-
43149103661
-
Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus
-
Ray DA, Feschotte C, Pagan HJT, Smith JD, Pritham E, et al. 2008. Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus. Genome Res. 18:717-28
-
(2008)
Genome Res.
, vol.18
, pp. 717-728
-
-
Ray, D.A.1
Feschotte, C.2
Pagan, H.J.T.3
Smith, J.D.4
Pritham, E.5
-
106
-
-
33847633354
-
Bats with hATs: Evidence for recent DNA transposon activity in genus Myotis
-
Ray DA, Pagan HJT, Thompson ML, Stevens RD. 2007. Bats with hATs: evidence for recent DNA transposon activity in genus Myotis. Mol. Biol. Evol. 24:632-39
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 632-639
-
-
Ray, D.A.1
Pagan, H.J.T.2
Thompson, M.L.3
Stevens, R.D.4
-
107
-
-
80053454411
-
Retrotransposon-induced heterochromatin spreading in themouse revealed by insertional polymorphisms
-
Rebollo R, Karimi MM, Bilenky M, Gagnier L, Miceli-Royer K, et al. 2011. Retrotransposon-induced heterochromatin spreading in themouse revealed by insertional polymorphisms. PLoSGenet. 7:e1002301
-
(2011)
PLoSGenet.
, vol.7
-
-
Rebollo, R.1
Karimi, M.M.2
Bilenky, M.3
Gagnier, L.4
Miceli-Royer, K.5
-
108
-
-
37849032457
-
The physcomitrella genome reveals evolutionary insights into the conquest of land by plants
-
Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, et al. 2008. The physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science 319:64-69
-
(2008)
Science
, vol.319
, pp. 64-69
-
-
Rensing, S.A.1
Lang, D.2
Zimmer, A.D.3
Terry, A.4
Salamov, A.5
-
109
-
-
0013630297
-
Nested retrotransposons in the intergenic regions of the maize genome
-
SanMiguel P, Tikhonov A, Jin YK, Motchoulskaia N, Zakharov D, et al. 1996. Nested retrotransposons in the intergenic regions of the maize genome. Science 274:765-68
-
(1996)
Science
, vol.274
, pp. 765-768
-
-
Sanmiguel, P.1
Tikhonov, A.2
Jin, Y.K.3
Motchoulskaia, N.4
Zakharov, D.5
-
110
-
-
84870166411
-
The LTR-retrotransposons of maize
-
SanMiguel P, Vitte C. 2009. The LTR-retrotransposons of maize. Handbook Maize III: 307-27
-
(2009)
Handbook Maize
, vol.3
, pp. 307-327
-
-
Sanmiguel, P.1
Vitte, C.2
-
111
-
-
70450202132
-
The B73 maize genome: Complexity, diversity, and dynamics
-
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, et al. 2009. The B73 maize genome: complexity, diversity, and dynamics. Science 326:1112-15
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
Stein, J.C.4
Wei, F.5
-
112
-
-
77955271952
-
LINE-1 retrotransposons: Mediators of somatic variation in neuronal genomes
-
Singer T, McConnell MJ, Marchetto MCN, Coufal NG, Gage FH. 2010. LINE-1 retrotransposons: mediators of somatic variation in neuronal genomes? Trends Neurosci. 33:345-54
-
(2010)
Trends Neurosci
, vol.33
, pp. 345-354
-
-
Singer, T.1
McConnell, M.J.2
Marchetto, M.C.N.3
Coufal, N.G.4
Gage, F.H.5
-
114
-
-
0027992609
-
An env-like protein encoded by a Drosophila retroelement: Evidence that gypsy is an infectious retrovirus
-
Song SU, Gerasimova T, Kurkulos M, Boeke JD, Corces VG. 1994. An env-like protein encoded by a Drosophila retroelement: evidence that gypsy is an infectious retrovirus. Genes Dev. 8:2046-57
-
(1994)
Genes Dev.
, vol.8
, pp. 2046-2057
-
-
Song, S.U.1
Gerasimova, T.2
Kurkulos, M.3
Boeke, J.D.4
Corces, V.G.5
-
115
-
-
80052318161
-
A comprehensive map of mobile element insertion polymorphisms in humans
-
Stewart C, Kural D, Strömberg MP, Walker JA, Konkel MK, et al. 2011. A comprehensive map of mobile element insertion polymorphisms in humans. PLoS Genet. 7:e1002236
-
(2011)
PLoS Genet.
, vol.7
-
-
Stewart, C.1
Kural, D.2
Strömberg, M.P.3
Walker, J.A.4
Konkel, M.K.5
-
116
-
-
80054968887
-
Identification of a functional transposon insertion in the maize domestication gene tb1
-
Studer A, Zhao Q, Ross-Ibarra J, Doebley J. 2011. Identification of a functional transposon insertion in the maize domestication gene tb1. Nat. Genet. 43:1160-63
-
(2011)
Nat. Genet.
, vol.43
, pp. 1160-1163
-
-
Studer, A.1
Zhao, Q.2
Ross-Ibarra, J.3
Doebley, J.4
-
117
-
-
0035171986
-
An Alu insert as the cause of a severe form of hemophilia A
-
Sukarova E, Dimovski A, Tchacarova P, Petkov G, Efremov G. 2000. An Alu insert as the cause of a severe form of hemophilia A. Acta Haematol. 106:126-29
-
(2000)
Acta Haematol.
, vol.106
, pp. 126-129
-
-
Sukarova, E.1
Dimovski, A.2
Tchacarova, P.3
Petkov, G.4
Efremov, G.5
-
118
-
-
0035797901
-
Insertional polymorphisms of full-length endogenous retroviruses in humans
-
Turner G, Barbulescu M, Su M, Jensen-SeamanMI, Kidd KK, Lenz J. 2001. Insertional polymorphisms of full-length endogenous retroviruses in humans. Curr. Biol. 11:1531-35
-
(2001)
Curr. Biol.
, vol.11
, pp. 1531-1535
-
-
Turner, G.1
Barbulescu, M.2
Su, M.3
Jensen-Seaman, M.I.4
Kidd, K.K.5
Lenz, J.6
-
119
-
-
33750018038
-
Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation
-
Ungerer MC, Strakosh SC, Zhen Y. 2006. Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation. Curr. Biol. 16:R872-73
-
(2006)
Curr. Biol.
, vol.16
-
-
Ungerer, M.C.1
Strakosh, S.C.2
Zhen, Y.3
-
120
-
-
0031886532
-
Transposon display identifies individual transposable elements in high copy number lines
-
Va D, De N, Broeck N, Maes T, Sauer M, Zethof J. 1998. Transposon display identifies individual transposable elements in high copy number lines. Plant J. 13:121-29
-
(1998)
Plant J.
, vol.13
, pp. 121-129
-
-
Va, D.1
De, N.2
Broeck, N.3
Maes, T.4
Sauer, M.5
Zethof, J.6
-
121
-
-
34447320759
-
L1 retrotransposition can occur early in human embryonic development
-
van den Hurk JAJM, Meij IC, del Carmen Seleme M, Kano H, Nikopoulos K, et al. 2007. L1 retrotransposition can occur early in human embryonic development. Hum. Mol. Genet. 16:1587-92
-
(2007)
Hum. Mol. Genet.
, vol.16
, pp. 1587-1592
-
-
Van Den Hurk, J.A.J.M.1
Meij, I.C.2
Del Carmen Seleme, M.3
Kano, H.4
Nikopoulos, K.5
-
122
-
-
0026885574
-
Alternative splicing induced by insertion of retrotransposons into the maize waxy gene
-
Varagona MJ, Purugganan M, Wessler SR. 1992. Alternative splicing induced by insertion of retrotransposons into the maize waxy gene. Plant Cell Online 4:811
-
(1992)
Plant Cell Online
, vol.4
, pp. 811
-
-
Varagona, M.J.1
Purugganan, M.2
Wessler, S.R.3
-
123
-
-
23844543047
-
LTR retrotransposons and flowering plant genome size: Emergence of the increase/decrease model
-
Vitte C, Panaud O. 2005. LTR retrotransposons and flowering plant genome size: emergence of the increase/decrease model. Cytogenet. Genome Res. 110:91-107
-
(2005)
Cytogenet. Genome Res.
, vol.110
, pp. 91-107
-
-
Vitte, C.1
Panaud, O.2
-
124
-
-
33845215653
-
Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus
-
Wang Q, Dooner HK. 2006. Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus. Proc. Natl. Acad. Sci. USA 103:17644-49
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 17644-17649
-
-
Wang, Q.1
Dooner, H.K.2
-
125
-
-
74949094158
-
A novel active endogenous retrovirus family contributes to genome variability in rat inbred strains
-
Wang Y, Liška F, Gosele C, Sědová L, Krěn V, et al. 2010. A novel active endogenous retrovirus family contributes to genome variability in rat inbred strains. Genome Res. 20:19
-
(2010)
Genome Res.
, vol.20
, pp. 19
-
-
Wang, Y.1
Liška, F.2
Gosele, C.3
Sědová, L.4
Krěn, V.5
-
126
-
-
43449123631
-
Genome analysis of the platypus reveals unique signatures of evolution
-
Warren WC, Hillier LDW, Graves JAM, Birney E, Ponting CP, et al. 2008. Genome analysis of the platypus reveals unique signatures of evolution. Nature 453:175-83
-
(2008)
Nature
, vol.453
, pp. 175-183
-
-
Warren, W.C.1
Hillier, L.D.W.2
Graves, J.A.M.3
Birney, E.4
Ponting, C.P.5
-
127
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, et al. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420:520-62
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
-
128
-
-
0024294007
-
Phenotypic diversity mediated by themaize transposable elements ac and spm
-
Wessler SR. 1988. Phenotypic diversity mediated by themaize transposable elements ac and spm. Science 242:399
-
(1988)
Science
, vol.242
, pp. 399
-
-
Wessler, S.R.1
-
129
-
-
0022801411
-
Excision of ds produces waxy proteins with a range of enzymatic activities
-
Wessler S, Baran G, Varagona M, Dellaporta S. 1986. Excision of ds produces waxy proteins with a range of enzymatic activities. EMBO J. 5:2427
-
(1986)
EMBO J.
, vol.5
, pp. 2427
-
-
Wessler, S.1
Baran, G.2
Varagona, M.3
Dellaporta, S.4
-
130
-
-
33845204670
-
Transposon insertion site profiling chip (TIP-chip)
-
Wheelan SJ, Scheifele LZ, Martinez-Murillo F, Irizarry RA, Boeke JD. 2006. Transposon insertion site profiling chip (TIP-chip). Proc. Natl. Acad. Sci. USA 103:17632-37
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 17632-17637
-
-
Wheelan, S.J.1
Scheifele, L.Z.2
Martinez-Murillo, F.3
Irizarry, R.A.4
Boeke, J.D.5
-
131
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
Wicker T, Sabot F, Hua-Van A, Bennetzen JL, Capy P, et al. 2007. A unified classification system for eukaryotic transposable elements. Nat. Rev. Genet. 8:973-82
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 973-982
-
-
Wicker, T.1
Sabot, F.2
Hua-Van, A.3
Bennetzen, J.L.4
Capy, P.5
-
132
-
-
83455169070
-
Reprogramming somatic cells into iPS cells activates LINE-1 retroelement mobility
-
Wissing S, Muñoz-Lopez M, Macia A, Yang Z, Montano M, et al. 2012. Reprogramming somatic cells into iPS cells activates LINE-1 retroelement mobility. Hum. Mol. Genet. 21:208-18
-
(2012)
Hum. Mol. Genet.
, vol.21
, pp. 208-218
-
-
Wissing, S.1
Muñoz-Lopez, M.2
MacIa, A.3
Yang, Z.4
Montano, M.5
-
133
-
-
33750165708
-
Human population genetic structure and diversity inferred from polymorphic L1 (LINE-1) and alu insertions
-
Witherspoon DJ, Marchani EE, WatkinsWS, Ostler CT, Wooding SP, et al. 2006. Human population genetic structure and diversity inferred from polymorphic L1 (LINE-1) and alu insertions. Hum. Hered. 62:30-46
-
(2006)
Hum. Hered.
, vol.62
, pp. 30-46
-
-
Witherspoon, D.J.1
Marchani, E.E.2
Watkins, W.S.3
Ostler, C.T.4
Wooding, S.P.5
-
134
-
-
77954038084
-
Mobile element scanning (ME-scan) by targeted high-throughput sequencing
-
Witherspoon DJ, Xing J, Zhang Y, Watkins WS, Batzer MA, Jorde LB. 2010. Mobile element scanning (ME-scan) by targeted high-throughput sequencing. BMC Genomics 11:410
-
(2010)
BMC Genomics
, vol.11
, pp. 410
-
-
Witherspoon, D.J.1
Xing, J.2
Zhang, Y.3
Watkins, W.S.4
Batzer, M.A.5
Jorde, L.B.6
-
135
-
-
40849085290
-
A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit
-
Xiao H, Jiang N, Schaffner E, Stockinger EJ, van der Knaap E. 2008. A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit. Science 319:1527
-
(2008)
Science
, vol.319
, pp. 1527
-
-
Xiao, H.1
Jiang, N.2
Schaffner, E.3
Stockinger, E.J.4
Van Der Knaap, E.5
-
136
-
-
67649982842
-
Mobile elements create structural variation: Analysis of a complete human genome
-
Xing J, Zhang Y, Han K, Salem AH, Sen SK, et al. 2009. Mobile elements create structural variation: analysis of a complete human genome. Genome Res. 19:1516-26
-
(2009)
Genome Res.
, vol.19
, pp. 1516-1526
-
-
Xing, J.1
Zhang, Y.2
Han, K.3
Salem, A.H.4
Sen, S.K.5
-
137
-
-
40649115913
-
Retrotransposon insertion polymorphisms in six rice genes and their evolutionary history
-
Xu Z, Ramakrishna W. 2008. Retrotransposon insertion polymorphisms in six rice genes and their evolutionary history. Gene 412:50-58
-
(2008)
Gene
, vol.412
, pp. 50-58
-
-
Xu, Z.1
Ramakrishna, W.2
-
138
-
-
70249087648
-
Tuned for transposition: Molecular determinants underlying the hyperactivity of a stowaway MITE
-
Yang G, Nagel DH, Feschotte C, Hancock CN, Wessler SR. 2009. Tuned for transposition: molecular determinants underlying the hyperactivity of a stowaway MITE. Science 325:1391-94
-
(2009)
Science
, vol.325
, pp. 1391-1394
-
-
Yang, G.1
Nagel, D.H.2
Feschotte, C.3
Hancock, C.N.4
Wessler, S.R.5
-
139
-
-
34547417996
-
Transposition of the rice miniature inverted repeat transposable element mPing in Arabidopsis thaliana
-
Yang G, Zhang F, Hancock CN, Wessler SR. 2007. Transposition of the rice miniature inverted repeat transposable element mPing in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 104:10962-67
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 10962-10967
-
-
Yang, G.1
Zhang, F.2
Hancock, C.N.3
Wessler, S.R.4
-
140
-
-
84870157406
-
Transposons Ac/Ds, En/Spm and their relatives in maize
-
Zhang J, Peterson T, Peterson PA. 2009. Transposons Ac/Ds, En/Spm and their relatives in maize. Handbook Maize III: 251-276
-
(2009)
Handbook Maize
, vol.3
, pp. 251-276
-
-
Zhang, J.1
Peterson, T.2
Peterson, P.A.3
-
141
-
-
38349165930
-
Rapid R2 retrotransposition leads to the loss of previously inserted copies via large deletions of the rDNA locus
-
Zhang X, Zhou J, Eickbush TH. 2008. Rapid R2 retrotransposition leads to the loss of previously inserted copies via large deletions of the rDNA locus. Mol. Biol. Evol. 25:229-37
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 229-237
-
-
Zhang, X.1
Zhou, J.2
Eickbush, T.H.3
-
142
-
-
40149098109
-
Genome-wide assessments reveal extremely high levels of polymorphism of two active families of mouse endogenous retroviral elements
-
Zhang Y, Maksakova IA, Gagnier L, Van De Lagemaat LN, Mager DL. 2008. Genome-wide assessments reveal extremely high levels of polymorphism of two active families of mouse endogenous retroviral elements. PLoS Genet. 4:e1000007
-
(2008)
PLoS Genet.
, vol.4
-
-
Zhang, Y.1
Maksakova, I.A.2
Gagnier, L.3
Van De Lagemaat, L.N.4
Mager, D.L.5
-
143
-
-
67249092083
-
Genome sequence comparison of col and ler lines reveals the dynamic nature of Arabidopsis chromosomes
-
Ziolkowski PA, Koczyk G, Galganski L, Sadowski J. 2009. Genome sequence comparison of col and ler lines reveals the dynamic nature of Arabidopsis chromosomes. Nucleic Acids Res. 37:3189-201
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 3189-3201
-
-
Ziolkowski, P.A.1
Koczyk, G.2
Galganski, L.3
Sadowski, J.4
|