Critical analysis of CCSD data quality

Journal of Chemical Information and Modeling

Volumn 52, Issue 11, 2012, Pages 2812-2814

  Egorova, K S ^a   Toukach, Ph V ^a  

^a N D ZELINSKY INSTITUTE OF ORGANIC CHEMISTRY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

CARBOHYDRATES;

BACTERIAL CARBOHYDRATES; BIOMEDICAL SCIENCE; CRITICAL ANALYSIS; DATA QUALITY;

DATABASE SYSTEMS;

CARBOHYDRATE;

ARTICLE; BACTERIUM; CHEMICAL DATABASE; CHEMICAL STRUCTURE; CHEMISTRY; FUNGUS; GLYCOBIOLOGY; METHODOLOGY; PLANT; STANDARD;

BACTERIA; CARBOHYDRATES; DATABASES, CHEMICAL; FUNGI; GLYCOMICS; MOLECULAR STRUCTURE; PLANTS; RESEARCH DESIGN;

EID: 84870052181     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci3002815     Document Type: Article

References (24)

1. Jones, C. J.; Larive, C. K. Carbohydrates: cracking the glycan sequence code Nature Chem. Biol. 2011, 7 (11) 758-759
2. Slovin, S. F; Ragupathi, G.; Fernandez, C.; Jefferson, M. P.; Diani, M.; Wilton, A. S.; Powell, S.; Spassova, M.; Reis, C.; Clausen, H.; Danishefsky, S.; Livingston, P.; Scher, H. I. A bivalent conjugate vaccine in the treatment of biochemically relapsed prostate cancer: a study of glycosylated MUC-2-KLH and Globo H-KLH conjugate vaccines given with the new semi-synthetic saponin immunological adjuvant GPI-0100 OR QS-21 Vaccine 2005, 23, 3114-3122
3. Pantophlet, R.; Wilson, I. A.; Burton, D. R. Hyperglycosylated mutants of human immunodeficiency virus (HIV) type 1 monomeric gp120 as novel antigens for HIV vaccine design J. Virol. 2003, 77, 5889-5901 (Pubitemid 36538981)
4. Jones, C. Vaccines based on the cell surface carbohydrates of pathogenic bacteria An. Acad. Bras. Cienc. 2005, 77, 293-324 (Pubitemid 40763788)
5. Gornik, O.; Dumić, J.; Flogel, M.; Lauc, G. Glycoscience-a new frontier in rational drug design Acta Pharm. 2006, 56, 19-30 (Pubitemid 43253970)
6. Shriver, Z.; Raguram, S.; Sasisekharan, K. Glycomics: a pathway to a class of new and improved therapeutics Nat. Rev. Drug Discovery 2004, 3, 863-873 (Pubitemid 39405947)
7. Ernst, B.; Magnani, J. L. From carbohydrate leads to glycomimetic drugs Nat. Rev. Drug Discovery 2009, 8, 661-677
8. Astronomo, R. D.; Burton, D. R. Carbohydrate vaccines: developing sweet solutions to sticky situations? Nat. Rev. Drug Discovery 2010, 9, 308-324
9. Boltje, T. J.; Buskas, T.; Boons, G.-J. Opportunities and challenges in synthetic oligosaccharide and glycoconjugate research Nat. Chem. 2009, 1, 611-622
10. von der Lieth, C.-W.; Lütteke, T.; Frank, M. The role of informatics in glycobiology research with special emphasis on automatic interpretation of MS spectra Biochim. Biophys. Acta 2006, 1760, 568-577
11. Doubet, S.; Bock, K.; Smith, D.; Darvill, A.; Albersheim, P. The Complex Carbohydrate Structure Database Trends Biochem. Sci. 1989, 14, 475-477 (Pubitemid 19284340)
12. Doubet, S.; Albersheim, P. Carbbank Glycobiology 1992, 2, 505
13. Lütteke, T.; Bohne-Lang, A.; Loss, A.; Goetz, T.; Frank, M.; von der Lieth, C. W. GLYCOSCIENCES.de: an Internet portal to support glycomics and glycobiology research Glycobiology 2006, 16, 71R-81R
14. Cooper, C. A.; Joshi, H. J.; Harrison, M. J.; Wilkins, M. R.; Packer, N. H. GlycoSuiteDB: a curated relational database of glycoprotein glycan structures and their biological sources. 2003 update Nucleic Acids Res. 2003, 31, 511-513 (Pubitemid 36150442)
15. Raman, R.; Venkataraman, M.; Ramakrishnan, S.; Lang, W.; Raguram, S.; Sasisekharan, R. Advancing glycomics: implementation strategies at the consortium for functional glycomics Glycobiology 2006, 16, 82R-90R
16. Hashimoto, K.; Goto, S.; Kawano, S.; Aoki-Kinoshita, K. F.; Ueda, N.; Hamajima, M.; Kawasaki, T.; Kanehisa, M. KEGG as a glycome informatics resource Glycobiology 2006, 16, 63R-70R
17. Toukach, P. V. Bacterial carbohydrate structure database 3: principles and realization J. Chem. Inf. Model. 2011, 51, 159-170
18. Campbell, M. P.; Royle, L.; Radcliffe, C. M.; Dwek, R. A.; Rudd, P. M. GlycoBase and autoGU: tools for HPLC-based glycan analysis Bioinformatics 2008, 24, 1214-1216 (Pubitemid 351594175)
19. Maes, E.; Bonachera, F.; Strecker, G.; Guerardel, Y. SOACS index: an easy NMR-based query for glycan retrieval Carbohydr. Res. 2009, 344, 322-330
20. Stenutz, R.; Weintraub, A.; Widmalm, G. The structures of Escherichia coli O-polysaccharide antigens FEMS Microbiol. Rev. 2006, 30, 382-403
21. von der Lieth, C.-W.; Freir,e, A. A.; Blank, D.; Campbell, M. P.; Ceroni, A.; Damerell, D. R.; Dell, A.; Dwek, R. A.; Ernst, B.; Fogh, R.; Frank, M.; Geyer, H.; Geyer, R.; Harrison, M. J.; Henrick, K.; Herget, S.; Hull, W. E.; Ionides, J.; Joshi, H. J.; Kamerling, J. P.; Leeflang, B. R.; Lütteke, T.; Lundborg, M.; Maass, K.; Merry, A.; Ranzinger, R.; Rosen, J.; Royle, L.; Rudd, P. M.; Schloissnig, S.; Stenutz, R.; Vranken, W. F.; Widmalm, G.; Haslam, S. M. EUROCarbDB: an open-access platform for glycoinformatics Glycobiology 2011, 21, 493-502
22. Ranzinger, R.; Herget, S.; von der Lieth, C.-W.; Frank, M. GlycomeDB - a unified database for carbohydrate structures Nucleic Acids Res. 2011, 39, D373-376
23. Toukach, P.; Joshi, H. J.; Ranzinger, R.; Knirel, Y.; von der Lieth, C. W. Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de Nucleic Acids Res. 2007, 35, D280-D286
24. Federhen, S. The NCBI Taxonomy database Nucleic Acids Res. 2012, 40, D136-D143