-
2
-
-
77649220192
-
Current trends in ligand-based virtual screening: Molecular representations, data mining methods, new application areas, and performance evaluation
-
Geppert, H.; Vogt, M.; Bajorath, J. Current trends in ligand-based virtual screening: molecular representations, data mining methods, new application areas, and performance evaluation J. Chem. Inf. Model. 2010, 50, 205-216
-
(2010)
J. Chem. Inf. Model.
, vol.50
, pp. 205-216
-
-
Geppert, H.1
Vogt, M.2
Bajorath, J.3
-
3
-
-
78650352933
-
Quo vadis, virtual screening? A comprehensive survey of prospective applications
-
Rippenhausen, P.; Nisius, B.; Peltason, L.; Bajorath, J. Quo vadis, virtual screening? A comprehensive survey of prospective applications J. Med. Chem. 2010, 53, 8461-8467
-
(2010)
J. Med. Chem.
, vol.53
, pp. 8461-8467
-
-
Rippenhausen, P.1
Nisius, B.2
Peltason, L.3
Bajorath, J.4
-
4
-
-
77950503976
-
Virtual screening: An endless staircase?
-
Schneider, G. Virtual screening: an endless staircase? Nat. Rev. Drug Discov. 2010, 9, 273-276
-
(2010)
Nat. Rev. Drug Discov.
, vol.9
, pp. 273-276
-
-
Schneider, G.1
-
6
-
-
57849168939
-
Similarity methods in chemoinformatics
-
Willett, P. Similarity methods in chemoinformatics Ann. Rev. Inform. Sci. Technol. 2009, 43, 3-71
-
(2009)
Ann. Rev. Inform. Sci. Technol.
, vol.43
, pp. 3-71
-
-
Willett, P.1
-
7
-
-
61949166066
-
How similar are similarity searching methods? A principal components analysis of molecular descriptor space
-
Bender, A.; Jenkins, J. L.; Scheiber, J.; Sukuru, S. C. K.; Glick, M.; Davies, J. W. How similar are similarity searching methods? A principal components analysis of molecular descriptor space J. Chem. Inf. Model. 2009, 49, 108-119
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 108-119
-
-
Bender, A.1
Jenkins, J.L.2
Scheiber, J.3
Sukuru, S.C.K.4
Glick, M.5
Davies, J.W.6
-
9
-
-
34447515227
-
Chemical similarity searches: When is complexity justified?
-
DOI 10.1517/17460441.2.4.423
-
Sheridan, R. P. Chemical similarity searches: when is complexity justified? Expert Opin. Drug Discov. 2007, 2, 423-430 (Pubitemid 47073070)
-
(2007)
Expert Opinion on Drug Discovery
, vol.2
, Issue.4
, pp. 423-430
-
-
Sheridan, R.P.1
-
10
-
-
77956276766
-
Analysis and comparison of 2D fingerprints: Insights into database screening performance using eight fingerprint methods
-
Duan, J.; Dixon, S. L.; Lowrie, J. F.; Sherman, W. Analysis and comparison of 2D fingerprints: Insights into database screening performance using eight fingerprint methods J. Mol. Graph. Mod. 2010, 29, 157-170
-
(2010)
J. Mol. Graph. Mod.
, vol.29
, pp. 157-170
-
-
Duan, J.1
Dixon, S.L.2
Lowrie, J.F.3
Sherman, W.4
-
11
-
-
0036249270
-
Grouping of coefficients for the calculation of inter-molecular similarity and dissimilarity using 2D fragment bit-strings
-
Holliday, J. D.; Hu, C.-Y.; Willett, P. Grouping of coefficients for the calculation of inter-molecular similarity and dissimilarity using 2D fragment bit-strings Combin. Chem. High-Throughput Screening 2002, 5, 155-166 (Pubitemid 34475167)
-
(2002)
Combinatorial Chemistry and High Throughput Screening
, vol.5
, Issue.2
, pp. 155-166
-
-
Holliday, J.D.1
Hu, C.-Y.2
Willett, P.3
-
12
-
-
77952780755
-
Large-scale systematic analysis of 2D fingerprint methods and parameters to improve virtual screening enrichments
-
Sastry, M.; Lowrie, J. F.; Dixon, S. L.; Sherman, W. Large-scale systematic analysis of 2D fingerprint methods and parameters to improve virtual screening enrichments J. Chem. Inf. Model. 2010, 50, 771-748
-
(2010)
J. Chem. Inf. Model.
, vol.50
, pp. 771-748
-
-
Sastry, M.1
Lowrie, J.F.2
Dixon, S.L.3
Sherman, W.4
-
13
-
-
21844514245
-
Comparing resemblance measures
-
Batagelj, V.; Bren, M. Comparing resemblance measures J. Classif. 1995, 12, 73-90
-
(1995)
J. Classif.
, vol.12
, pp. 73-90
-
-
Batagelj, V.1
Bren, M.2
-
14
-
-
0001115709
-
Binary (presence-absence) similarity coefficients
-
Cheetham, A. H.; Hazel, J. E. Binary (presence-absence) similarity coefficients J. Paleontol. 1969, 43, 1130-1136
-
(1969)
J. Paleontol.
, vol.43
, pp. 1130-1136
-
-
Cheetham, A.H.1
Hazel, J.E.2
-
15
-
-
0020451042
-
Coefficients of Association and Similarity, based on Binary (Presence-Absence) data: An Evaluation
-
Hubalek, Z. Coefficients of Association and Similarity, based on Binary (Presence-Absence) data: An Evaluation Biol. Rev. 1982, 57, 669-689
-
(1982)
Biol. Rev.
, vol.57
, pp. 669-689
-
-
Hubalek, Z.1
-
19
-
-
84861512073
-
Similarity-based data mining in files of two-dimensional chemical structures using fingerprint-based measures of molecular resemblance
-
Willett, P. Similarity-based data mining in files of two-dimensional chemical structures using fingerprint-based measures of molecular resemblance WIRES Data Mining Knowledge Disc. 2011, 1, 241-251
-
(2011)
WIRES Data Mining Knowledge Disc.
, vol.1
, pp. 241-251
-
-
Willett, P.1
-
20
-
-
0000825481
-
A statistical method for evaluating systematic relationships
-
Sokal, R. R.; Michener, C. D. A statistical method for evaluating systematic relationships Univ. Kansas. Sci. Bull. 1958, 38, 1409-1438
-
(1958)
Univ. Kansas. Sci. Bull.
, vol.38
, pp. 1409-1438
-
-
Sokal, R.R.1
Michener, C.D.2
-
21
-
-
84950632109
-
Objective criteria for the evaluation of clustering methods
-
Rand, W. Objective criteria for the evaluation of clustering methods J. Amer. Statist. Assoc. 1971, 66, 846-850
-
(1971)
J. Amer. Statist. Assoc.
, vol.66
, pp. 846-850
-
-
Rand, W.1
-
22
-
-
37049239596
-
A computer program for classifying plants
-
Rogers, D. J.; Tanimoto, T. T. A computer program for classifying plants Science 1960, 132, 1115-1118
-
(1960)
Science
, vol.132
, pp. 1115-1118
-
-
Rogers, D.J.1
Tanimoto, T.T.2
-
23
-
-
84980090975
-
The distribution of the flora of the alpine zone
-
Jaccard, P. The distribution of the flora of the alpine zone New Phytol. 1912, 11, 37-50
-
(1912)
New Phytol.
, vol.11
, pp. 37-50
-
-
Jaccard, P.1
-
24
-
-
0242390943
-
Some applications of the quadrat method
-
Gleason, H. A. Some applications of the quadrat method Bull. Torrey Botanical Club 1920, 47, 21-33
-
(1920)
Bull. Torrey Botanical Club
, vol.47
, pp. 21-33
-
-
Gleason, H.A.1
-
25
-
-
0000250265
-
Measures of the amount of ecological association between species
-
Dice, L. R. Measures of the amount of ecological association between species Ecology 1945, 26, 297-302
-
(1945)
Ecology
, vol.26
, pp. 297-302
-
-
Dice, L.R.1
-
26
-
-
0002969802
-
A method for establishing groups of equal amplitude in plant sociology based on similarity of species content
-
Sørenson, T. A method for establishing groups of equal amplitude in plant sociology based on similarity of species content Biologiske Skrifter 1948, 5, 1-34
-
(1948)
Biologiske Skrifter
, vol.5
, pp. 1-34
-
-
Sørenson, T.1
-
27
-
-
0010539950
-
On habitat and association of species of Anopheline larvae in South.Eastern Madras
-
Russell, P. F.; Rao, T. R. On habitat and association of species of Anopheline larvae in South.Eastern Madras J. Malaria Inst. India 1940, 3, 153-178
-
(1940)
J. Malaria Inst. India
, vol.3
, pp. 153-178
-
-
Russell, P.F.1
Rao, T.R.2
-
28
-
-
0006040005
-
On the local distribution of certain Illinois fishes: An essay in statistical ecology
-
Forbes, S. A. On the local distribution of certain Illinois fishes: An essay in statistical ecology Bull. Illinois State Lab. Nat. History 1907, 7, 273-303
-
(1907)
Bull. Illinois State Lab. Nat. History
, vol.7
, pp. 273-303
-
-
Forbes, S.A.1
-
29
-
-
0001812683
-
Mammals and the nature of continents
-
Simpson, G. G. Mammals and the nature of continents Am. J. Sci. 1943, 241, 1-31
-
(1943)
Am. J. Sci.
, vol.241
, pp. 1-31
-
-
Simpson, G.G.1
-
32
-
-
85007711844
-
Zoogeographic studies on the soleoid fishes found in Japan and its neighboring regions
-
Ochiai, A. Zoogeographic studies on the soleoid fishes found in Japan and its neighboring regions Bull. Jpn. Soc. Fish Sci. 1957, 22, 526-530
-
(1957)
Bull. Jpn. Soc. Fish Sci.
, vol.22
, pp. 526-530
-
-
Ochiai, A.1
-
34
-
-
0001953749
-
Die Pflanzenassociationen der Pienenen
-
Kulczynski, S. Die Pflanzenassociationen der Pienenen Bull. Int. L'Acad́. Polonaise Sci. Lett., Classe Sci. Math. Nat., Ser. B, Suppĺ. II 1927, 2, 57-203
-
(1927)
Bull. Int. l'Acad́. Polonaise Sci. Lett., Classe Sci. Math. Nat., Ser. B, Suppĺ. II
, vol.2
, pp. 57-203
-
-
Kulczynski, S.1
-
36
-
-
0023486365
-
Compositional dissimilarity as a robust measure of ecological distance
-
Faith, D. P.; Minchin, P. R.; Belcin, L. Compositional dissimilarity as a robust measure of ecological distance Plant Ecol. 1987, 69, 57-68
-
(1987)
Plant Ecol.
, vol.69
, pp. 57-68
-
-
Faith, D.P.1
Minchin, P.R.2
Belcin, L.3
-
37
-
-
0001774008
-
An index of similarity and its applications to classificatory problems
-
In; Murphy, P. W. Butterworths: London (UK)
-
Mountford, M. D. An index of similarity and its applications to classificatory problems. In Progress in Soil Zoology; Murphy, P. W., Ed.; Butterworths: London (UK), 1962; pp 43-50.
-
(1962)
Progress in Soil Zoology
, pp. 43-50
-
-
Mountford, M.D.1
-
38
-
-
0006041829
-
Marine ecology and the coefficient of association
-
Michael, E. L. Marine ecology and the coefficient of association J. Animal Ecol. 1920, 8, 54-59
-
(1920)
J. Animal Ecol.
, vol.8
, pp. 54-59
-
-
Michael, E.L.1
-
39
-
-
0013944694
-
A proposed index for measuring agreement in test-retest studies
-
Rogot, E.; Goldberg, I. D. A proposed index for measuring agreement in test-retest studies J. Chronic Disease 1966, 19, 991-1006
-
(1966)
J. Chronic Disease
, vol.19
, pp. 991-1006
-
-
Rogot, E.1
Goldberg, I.D.2
-
40
-
-
0010092286
-
Reliability scores that delude: An Alice in Wonderful trip through the misleading characteristics of interobserver agreement scores in interval coding
-
In; Ramp, E. Semb, G. Prentic-Hall: Englewood Cliffs, NJ.
-
Hawkins, R. P.; Dotson, V. A. Reliability scores that delude: An Alice in Wonderful trip through the misleading characteristics of interobserver agreement scores in interval coding. In Behavior Analysis: Areas of Research and Application; Ramp, E.; Semb, G., Eds.; Prentic-Hall: Englewood Cliffs, NJ, 1968.
-
(1968)
Behavior Analysis: Areas of Research and Application
-
-
Hawkins, R.P.1
Dotson, V.A.2
-
41
-
-
0001218846
-
On the association of attributes in statistics
-
Yule, G. U. On the association of attributes in statistics Philos. Trans. R. Soc. A 1900, 75, 257-319
-
(1900)
Philos. Trans. R. Soc. A
, vol.75
, pp. 257-319
-
-
Yule, G.U.1
-
42
-
-
0000721530
-
On the methods of measuring association between two attributes
-
Yule, G. U. On the methods of measuring association between two attributes J. R. Stat. Soc. 1912, 75, 579-642
-
(1912)
J. R. Stat. Soc.
, vol.75
, pp. 579-642
-
-
Yule, G.U.1
-
43
-
-
0000384188
-
The measurement of interspecific association
-
Cole, L. C. The measurement of interspecific association Ecology 1949, 30, 411-424
-
(1949)
Ecology
, vol.30
, pp. 411-424
-
-
Cole, L.C.1
-
44
-
-
78650797552
-
A Survey of Binary Similarity and Distance Measures
-
Choi, S.-S.; Cha, S.-H.; Tappert, C. C. A Survey of Binary Similarity and Distance Measures J. Syst., Cyber. and Inform. 2012, 8, 43-48
-
(2012)
J. Syst., Cyber. and Inform.
, vol.8
, pp. 43-48
-
-
Choi, S.-S.1
Cha, S.-H.2
Tappert, C.C.3
-
45
-
-
34248978779
-
Measures of association for cross classifications
-
Goodman, L. A.; Kruskal, W. H. Measures of association for cross classifications J. Amer. Stat. Assoc. 1954, 49, 732-764
-
(1954)
J. Amer. Stat. Assoc.
, vol.49
, pp. 732-764
-
-
Goodman, L.A.1
Kruskal, W.H.2
-
46
-
-
0000220605
-
On theories of association
-
Pearson, K.; Heron, D. On theories of association Biometrika 1913, 9, 159-315
-
(1913)
Biometrika
, vol.9
, pp. 159-315
-
-
Pearson, K.1
Heron, D.2
-
47
-
-
1842641692
-
A method for comparing two hierarchical clusterings: Comment
-
Wallace, D. L. A method for comparing two hierarchical clusterings: Comment J. Am. Stat. Assoc. 1983, 78, 569-576
-
(1983)
J. Am. Stat. Assoc.
, vol.78
, pp. 569-576
-
-
Wallace, D.L.1
-
48
-
-
0013357313
-
Nonparametric unfolding models for dichotomous data
-
Post, W. J.; Snijders, T. A. B. Nonparametric unfolding models for dichotomous data Methodika 1993, 7, 130-156
-
(1993)
Methodika
, vol.7
, pp. 130-156
-
-
Post, W.J.1
Snijders, T.A.B.2
-
49
-
-
0003367447
-
Molluscan assemblages from the marine middle Miocene of South Jutland and their environments
-
Sorgenfrei, T. Molluscan assemblages from the marine middle Miocene of South Jutland and their environments Danmark Geologiske Undersøgelse. Serie 2 1959, 79, 403-408
-
(1959)
Danmark Geologiske Undersøgelse. Serie 2
, vol.79
, pp. 403-408
-
-
Sorgenfrei, T.1
-
50
-
-
84973587732
-
A coefficient of agreement for nominal scales
-
Cohen, J. A coefficient of agreement for nominal scales Educ. Psychol. Measurements 1960, 20, 37-46
-
(1960)
Educ. Psychol. Measurements
, vol.20
, pp. 37-46
-
-
Cohen, J.1
-
51
-
-
0001100430
-
The numerical measure of the success of predictions
-
Peirce, C. S. The numerical measure of the success of predictions Science 1884, 4, 453-454
-
(1884)
Science
, vol.4
, pp. 453-454
-
-
Peirce, C.S.1
-
52
-
-
0014279913
-
Deriving coefficients of reliability and agreement for ratings
-
Maxwell, A. E.; Pilliner, A. E. G. Deriving coefficients of reliability and agreement for ratings Brit. J. Math. Stat. Psychol. 1968, 21, 105-116
-
(1968)
Brit. J. Math. Stat. Psychol.
, vol.21
, pp. 105-116
-
-
Maxwell, A.E.1
Pilliner, A.E.G.2
-
53
-
-
84987306092
-
A method for combining occurrence and nonoccurrence agreement scores
-
Harris, F. C.; Lahey, B. B. A method for combining occurrence and nonoccurrence agreement scores J. Appl. Behav. Anal. 1978, 11, 523-527
-
(1978)
J. Appl. Behav. Anal.
, vol.11
, pp. 523-527
-
-
Harris, F.C.1
Lahey, B.B.2
-
55
-
-
0017712746
-
Evaluation of some coefficients for use in numerical taxonomy of microorganisms
-
Austin, B.; Colwell, R. R. Evaluation of Some Coefficients for Use in Numerical Taxonomy of Microorganisms Int. J. Syst. Bacteriol. 1977, 27, 204-210 (Pubitemid 8195098)
-
(1977)
International Journal of Systematic Bacteriology
, vol.27
, Issue.3
, pp. 204-210
-
-
Austin, B.1
Colwell, R.R.2
-
56
-
-
0041510433
-
Merkmalsbestand und Verwandtschaftsbezienhungen der Farinose. Ein Betrag zum System der Monokotyledonen
-
Hamann, U. Merkmalsbestand und Verwandtschaftsbezienhungen der Farinose. Ein Betrag zum System der Monokotyledonen Willdenowia 1961, 2, 639-768
-
(1961)
Willdenowia
, vol.2
, pp. 639-768
-
-
Hamann, U.1
-
58
-
-
85004846287
-
Nominal scale response agreement as a generalized correlation
-
Hubert, L. J. Nominal scale response agreement as a generalized correlation Brit. J. Math. Stat. Psych. 1977, 30, 98-103
-
(1977)
Brit. J. Math. Stat. Psych.
, vol.30
, pp. 98-103
-
-
Hubert, L.J.1
-
59
-
-
33750730174
-
The determination and analysis of plankton communities
-
Special No., Indonesia
-
McConnaughey, B. H. The determination and analysis of plankton communities Mar. Res. 1964, Special No., Indonesia) 1-40
-
(1964)
Mar. Res.
, pp. 1-40
-
-
McConnaughey, B.H.1
-
60
-
-
33747044600
-
Metric and Euclidean properties of dis-similarity coefficients
-
Gower, J. C.; Legendre, P. Metric and Euclidean properties of dis-similarity coefficients J. Classification 1986, 3, 5-48
-
(1986)
J. Classification
, vol.3
, pp. 5-48
-
-
Gower, J.C.1
Legendre, P.2
-
61
-
-
0014129195
-
Hierarchical clustering schemes
-
Johnson, S. C. Hierarchical clustering schemes Psychometrika 1967, 32, 241-254
-
(1967)
Psychometrika
, vol.32
, pp. 241-254
-
-
Johnson, S.C.1
-
62
-
-
33748063869
-
Reliability of content analysis:The case of nominal scale coding
-
Scott, W. A. Reliability of content analysis:The case of nominal scale coding Public Opin. Q. 1955, 19, 321-325
-
(1955)
Public Opin. Q.
, vol.19
, pp. 321-325
-
-
Scott, W.A.1
-
63
-
-
0142082987
-
On the use of ordination models in phytosociology
-
van der Maarel, E. On the use of ordination models in phytosociology Vegetatio 1969, 19, 21-46
-
(1969)
Vegetatio
, vol.19
, pp. 21-46
-
-
Van Der Maarel, E.1
-
64
-
-
70349879097
-
Turbo similarity searching: Effect of fingerprint and dataset on virtual-screening performance
-
Gardiner, E. J.; Gillet, V. J.; Haranczyk, M.; Hert, J.; Holliday, J. D.; Malim, N. Turbo similarity searching: Effect of fingerprint and dataset on virtual-screening performance Stat. Anal. Data Mining 2009, 2, 103-114
-
(2009)
Stat. Anal. Data Mining
, vol.2
, pp. 103-114
-
-
Gardiner, E.J.1
Gillet, V.J.2
Haranczyk, M.3
Hert, J.4
Holliday, J.D.5
Malim, N.6
-
65
-
-
65349136650
-
Maximum Unbiased Validation (MUV) data sets for virtual screening based on PubChem bioactivity data
-
Rohrer, S. G.; Baumann, K. Maximum Unbiased Validation (MUV) data sets for virtual screening based on PubChem bioactivity data J. Chem. Inf. Model. 2009, 49, 169-184
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 169-184
-
-
Rohrer, S.G.1
Baumann, K.2
-
66
-
-
77952772341
-
Extended-connectivity fingerprints
-
Rogers, D.; Hahn, M. Extended-connectivity fingerprints J. Chem. Inf. Model. 2010, 50, 742-754
-
(2010)
J. Chem. Inf. Model.
, vol.50
, pp. 742-754
-
-
Rogers, D.1
Hahn, M.2
-
68
-
-
84870964506
-
-
ver. 7.1. StatSoft, Padova, Italy.
-
STATISTICA, ver. 7.1. StatSoft, Padova, Italy.
-
STATISTICA
-
-
-
70
-
-
2942710342
-
Application of the concept of partial order on comparative evaluation of environmental chemicals
-
DOI 10.1002/(SICI)1521-401X(199905)27:3<170::AID-AHEH170>3.0.CO;2-9
-
Brüggemann, R.; Bücherl, C.; Pudenz, S.; Steinberg, E. W. Application of the Concept of Partial Order on Comparative Evaluation of Environmental Chemicals Acta Hydrochim. Hydrobiol. 1999, 27, 170-178 (Pubitemid 29419296)
-
(1999)
Acta Hydrochimica et Hydrobiologica
, vol.27
, Issue.3
, pp. 170-178
-
-
Bruggemann, R.1
Bucherl, C.2
Pudenz, S.3
Steinberg, C.E.W.4
-
71
-
-
84870973244
-
-
DART software (Decision Analysis by Ranking Techniques)
-
DART software (Decision Analysis by Ranking Techniques), 2007; www.talete.mi.it.
-
(2007)
-
-
-
72
-
-
0037835585
-
Analysis and Display of the Size Dependence of Chemical Similarity Coefficients
-
Holliday, J. D.; Salim, N.; Whittle, M.; Willett, P. Analysis and Display of the Size Dependence of Chemical Similarity Coefficients J. Chem. Inf. Comput. Sci. 2003, 43, 819-828
-
(2003)
J. Chem. Inf. Comput. Sci.
, vol.43
, pp. 819-828
-
-
Holliday, J.D.1
Salim, N.2
Whittle, M.3
Willett, P.4
-
73
-
-
85032415954
-
-
ATDM Algorithm. In, version 16.0; Semeion Software no. 51, Rome, Italy, 2008-2012.
-
Buscema, M. ATDM Algorithm. In Modular Auto Associative ANNs, version 16.0; Semeion Software no. 51, Rome, Italy, 2008-2012; www.semeion.it.
-
Modular Auto Associative ANNs
-
-
Buscema, M.1
|