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Volumn 13, Issue 1, 2012, Pages

Slim-Filter: An interactive windows-based application for illumina genome analyzer data assessment and manipulation

Author keywords

[No Author keywords available]

Indexed keywords

ANALYSIS PROCESS; BROAD SPECTRUM; COPY NUMBER; CURATION; DATA ASSESSMENT; DATA FILTRATION; DATA MANIPULATIONS; EFFECTIVE ANALYSIS; FILE FORMATS; ILLUMINA; LARGE FILES; LOW QUALITIES; NEXT-GENERATION SEQUENCING; PCR PRIMERS; QUALITY ASSESSMENT; ROLL BACK; SERVICE PROVIDER; STATISTICAL PROPERTIES;

EID: 84870007007     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-13-166     Document Type: Article
Times cited : (6)

References (9)
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    • Martínez-Alcántara A, et al. PIQA: pipeline for Illumina G1 genome analyzer data quality assessment. Bioinformatics 2009, 25:2438-2439. 10.1093/bioinformatics/btp429, 2735671, 19602525.
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    • Martínez-Alcántara, A.1
  • 2
    • 70349866687 scopus 로고    scopus 로고
    • ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
    • 10.1093/bioinformatics/btp450, 2752612, 19654119
    • Morgan M, et al. ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. Bioinformatics 2009, 25:2607-2608. 10.1093/bioinformatics/btp450, 2752612, 19654119.
    • (2009) Bioinformatics , vol.25 , pp. 2607-2608
    • Morgan, M.1
  • 3
    • 69949135779 scopus 로고    scopus 로고
    • Swift: primary data analysis for the Illumina Solexa sequencing platform
    • 10.1093/bioinformatics/btp383, 2734321, 19549630
    • Whiteford N, et al. Swift: primary data analysis for the Illumina Solexa sequencing platform. Bioinformatics 2009, 25:2194-2199. 10.1093/bioinformatics/btp383, 2734321, 19549630.
    • (2009) Bioinformatics , vol.25 , pp. 2194-2199
    • Whiteford, N.1
  • 4
    • 0031978181 scopus 로고
    • Base-calling of automated sequencer traces using Phred
    • Ewing B, Green P. Base-calling of automated sequencer traces using Phred. II Error probabilities. Genome Res 1994, 8:186-194.
    • (1994) II Error probabilities. Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 5
    • 70350669879 scopus 로고    scopus 로고
    • TagDust - a program to eliminate artifacts from next generation sequencing data
    • 10.1093/bioinformatics/btp527, 2781754, 19737799
    • Lassmann T, et al. TagDust - a program to eliminate artifacts from next generation sequencing data. Bioinformatics 2009, 25:2839-2840. 10.1093/bioinformatics/btp527, 2781754, 19737799.
    • (2009) Bioinformatics , vol.25 , pp. 2839-2840
    • Lassmann, T.1
  • 6
    • 69949178009 scopus 로고    scopus 로고
    • SHREC: a short-read error correction method
    • 10.1093/bioinformatics/btp379, 19542152
    • Schröder J, et al. SHREC: a short-read error correction method. Bioinformatics 2009, 25:2157-2163. 10.1093/bioinformatics/btp379, 19542152.
    • (2009) Bioinformatics , vol.25 , pp. 2157-2163
    • Schröder, J.1
  • 7
    • 63149150664 scopus 로고    scopus 로고
    • Correct short reads with high error rates for improved sequencing result
    • Wong T, et al. Correct short reads with high error rates for improved sequencing result. Int J Bioinforma Res Appl 2009, 5:224-237.
    • (2009) Int J Bioinforma Res Appl , vol.5 , pp. 224-237
    • Wong, T.1
  • 8
    • 60849121412 scopus 로고    scopus 로고
    • Finding optimal threshold for correction error reads in DNA Assembling
    • Francis YL, Chin, et al. Finding optimal threshold for correction error reads in DNA Assembling. BMC Bioinforma 2009, 10(Suppl 1):S15.
    • (2009) BMC Bioinforma , vol.10 , Issue.SUPPL. 1
    • Francis, Y.L.1    Chin2
  • 9
    • 78349249371 scopus 로고    scopus 로고
    • EDAR: An Efficient Error Detection and Removal Algorithm for Next Generation Sequencing Data
    • 10.1089/cmb.2010.0127, 20973743
    • Zhao X, et al. EDAR: An Efficient Error Detection and Removal Algorithm for Next Generation Sequencing Data. J Comput Biol 2010, 17(11):1549-1560. 10.1089/cmb.2010.0127, 20973743.
    • (2010) J Comput Biol , vol.17 , Issue.11 , pp. 1549-1560
    • Zhao, X.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.