-
1
-
-
70349665213
-
Substrate interactions and promiscuity in a viral DNA packaging motor
-
K. Aathavan, A.T. Politzer, A. Kaplan, J.R. Moffitt, Y.R. Chemla, S. Grimes, P.J. Jardine, D.L. Anderson, and C. Bustamante Substrate interactions and promiscuity in a viral DNA packaging motor Nature 461 2009 669 673
-
(2009)
Nature
, vol.461
, pp. 669-673
-
-
Aathavan, K.1
Politzer, A.T.2
Kaplan, A.3
Moffitt, J.R.4
Chemla, Y.R.5
Grimes, S.6
Jardine, P.J.7
Anderson, D.L.8
Bustamante, C.9
-
2
-
-
0028114231
-
Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria
-
J.P. Abrahams, A.G. Leslie, R. Lutter, and J.E. Walker Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria Nature 370 1994 621 628
-
(1994)
Nature
, vol.370
, pp. 621-628
-
-
Abrahams, J.P.1
Leslie, A.G.2
Lutter, R.3
Walker, J.E.4
-
3
-
-
34447628890
-
Coupling of rotation and catalysis in F(1)-ATPase revealed by single-molecule imaging and manipulation
-
K. Adachi, K. Oiwa, T. Nishizaka, S. Furuike, H. Noji, H. Itoh, M. Yoshida, and K. Kinosita Jr. Coupling of rotation and catalysis in F(1)-ATPase revealed by single-molecule imaging and manipulation Cell 130 2007 309 321
-
(2007)
Cell
, vol.130
, pp. 309-321
-
-
Adachi, K.1
Oiwa, K.2
Nishizaka, T.3
Furuike, S.4
Noji, H.5
Itoh, H.6
Yoshida, M.7
Kinosita, Jr.K.8
-
4
-
-
33744529571
-
Mechanochemistry of transcription termination factor Rho
-
J.L. Adelman, Y.J. Jeong, J.C. Liao, G. Patel, D.E. Kim, G. Oster, and S.S. Patel Mechanochemistry of transcription termination factor Rho Mol. Cell 22 2006 611 621
-
(2006)
Mol. Cell
, vol.22
, pp. 611-621
-
-
Adelman, J.L.1
Jeong, Y.J.2
Liao, J.C.3
Patel, G.4
Kim, D.E.5
Oster, G.6
Patel, S.S.7
-
6
-
-
52649096993
-
Subunit organization of Mcm2-7 and the unequal role of active sites in ATP hydrolysis and viability
-
M.L. Bochman, S.P. Bell, and A. Schwacha Subunit organization of Mcm2-7 and the unequal role of active sites in ATP hydrolysis and viability Mol. Cell. Biol. 28 2008 5865 5873
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 5865-5873
-
-
Bochman, M.L.1
Bell, S.P.2
Schwacha, A.3
-
7
-
-
48749086251
-
Comparative genomics and evolutionary trajectories of viral ATP dependent DNA-packaging systems
-
A.M. Burroughs, L.M. Iyer, and L. Aravind Comparative genomics and evolutionary trajectories of viral ATP dependent DNA-packaging systems Genome Dyn. 3 2007 48 65
-
(2007)
Genome Dyn.
, vol.3
, pp. 48-65
-
-
Burroughs, A.M.1
Iyer, L.M.2
Aravind, L.3
-
9
-
-
52149114343
-
High-resolution dual-trap optical tweezers with differential detection
-
P.R. Selvin, T. Ha, Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
-
C. Bustamante, Y.R. Chemla, and J.R. Moffitt High-resolution dual-trap optical tweezers with differential detection P.R. Selvin, T. Ha, Single-Molecule Techniques: A Laboratory Manual 2008 Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY 297 324
-
(2008)
Single-Molecule Techniques: A Laboratory Manual
, pp. 297-324
-
-
Bustamante, C.1
Chemla, Y.R.2
Moffitt, J.R.3
-
10
-
-
79952254224
-
Crystal structure of the dynein motor domain
-
A.P. Carter, C. Cho, L. Jin, and R.D. Vale Crystal structure of the dynein motor domain Science 331 2011 1159 1165
-
(2011)
Science
, vol.331
, pp. 1159-1165
-
-
Carter, A.P.1
Cho, C.2
Jin, L.3
Vale, R.D.4
-
11
-
-
80051707836
-
The DNA-packaging nanomotor of tailed bacteriophages
-
S.R. Casjens The DNA-packaging nanomotor of tailed bacteriophages Nat. Rev. Microbiol. 9 2011 647 657
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 647-657
-
-
Casjens, S.R.1
-
12
-
-
24144478521
-
Mechanism of force generation of a viral DNA packaging motor
-
Y.R. Chemla, K. Aathavan, J. Michaelis, S. Grimes, P.J. Jardine, D.L. Anderson, and C. Bustamante Mechanism of force generation of a viral DNA packaging motor Cell 122 2005 683 692
-
(2005)
Cell
, vol.122
, pp. 683-692
-
-
Chemla, Y.R.1
Aathavan, K.2
Michaelis, J.3
Grimes, S.4
Jardine, P.J.5
Anderson, D.L.6
Bustamante, C.7
-
13
-
-
30744451401
-
DNA-induced switch from independent to sequential dTTP hydrolysis in the bacteriophage T7 DNA helicase
-
D.J. Crampton, S. Mukherjee, and C.C. Richardson DNA-induced switch from independent to sequential dTTP hydrolysis in the bacteriophage T7 DNA helicase Mol. Cell 21 2006 165 174
-
(2006)
Mol. Cell
, vol.21
, pp. 165-174
-
-
Crampton, D.J.1
Mukherjee, S.2
Richardson, C.C.3
-
14
-
-
80054029342
-
DNA stretching by bacterial initiators promotes replication origin opening
-
K.E. Duderstadt, K. Chuang, and J.M. Berger DNA stretching by bacterial initiators promotes replication origin opening Nature 478 2011 209 213
-
(2011)
Nature
, vol.478
, pp. 209-213
-
-
Duderstadt, K.E.1
Chuang, K.2
Berger, J.M.3
-
15
-
-
33746375404
-
Mechanism of DNA translocation in a replicative hexameric helicase
-
E.J. Enemark, and L. Joshua-Tor Mechanism of DNA translocation in a replicative hexameric helicase Nature 442 2006 270 275
-
(2006)
Nature
, vol.442
, pp. 270-275
-
-
Enemark, E.J.1
Joshua-Tor, L.2
-
16
-
-
33745041480
-
Evolutionary relationships and structural mechanisms of AAA+ proteins
-
J.P. Erzberger, and J.M. Berger Evolutionary relationships and structural mechanisms of AAA+ proteins Annu. Rev. Biophys. Biomol. Struct. 35 2006 93 114
-
(2006)
Annu. Rev. Biophys. Biomol. Struct.
, vol.35
, pp. 93-114
-
-
Erzberger, J.P.1
Berger, J.M.2
-
17
-
-
4444226952
-
Mechanisms of conformational change for a replicative hexameric helicase of SV40 large tumor antigen
-
D. Gai, R. Zhao, D. Li, C.V. Finkielstein, and X.S. Chen Mechanisms of conformational change for a replicative hexameric helicase of SV40 large tumor antigen Cell 119 2004 47 60
-
(2004)
Cell
, vol.119
, pp. 47-60
-
-
Gai, D.1
Zhao, R.2
Li, D.3
Finkielstein, C.V.4
Chen, X.S.5
-
18
-
-
70350772363
-
Structures of asymmetric ClpX hexamers reveal nucleotide-dependent motions in a AAA+ protein-unfolding machine
-
S.E. Glynn, A. Martin, A.R. Nager, T.A. Baker, and R.T. Sauer Structures of asymmetric ClpX hexamers reveal nucleotide-dependent motions in a AAA+ protein-unfolding machine Cell 139 2009 744 756
-
(2009)
Cell
, vol.139
, pp. 744-756
-
-
Glynn, S.E.1
Martin, A.2
Nager, A.R.3
Baker, T.A.4
Sauer, R.T.5
-
19
-
-
0020023988
-
Myosin active-site trapping with vanadate ion
-
C.C. Goodno Myosin active-site trapping with vanadate ion Methods Enzymol. 85 Pt B 1982 116 123
-
(1982)
Methods Enzymol.
, vol.85
, Issue.PART B
, pp. 116-123
-
-
Goodno, C.C.1
-
20
-
-
0023660940
-
Prohead and DNA-gp3-dependent ATPase activity of the DNA packaging protein gp16 of bacteriophage phi 29
-
P. Guo, C. Peterson, and D. Anderson Prohead and DNA-gp3-dependent ATPase activity of the DNA packaging protein gp16 of bacteriophage phi 29 J. Mol. Biol. 197 1987 229 236
-
(1987)
J. Mol. Biol.
, vol.197
, pp. 229-236
-
-
Guo, P.1
Peterson, C.2
Anderson, D.3
-
21
-
-
84870025821
-
Viral DNA packaging motors
-
E. Egelman, Academic Press San Diego, CA
-
C.L. Hetherington, J.R. Moffitt, P.J. Jardine, and C. Bustamante Viral DNA packaging motors E. Egelman, Comprehensive Biophysics 2012 Academic Press San Diego, CA 420 446
-
(2012)
Comprehensive Biophysics
, pp. 420-446
-
-
Hetherington, C.L.1
Moffitt, J.R.2
Jardine, P.J.3
Bustamante, C.4
-
22
-
-
74749095240
-
Activation of the MCM2-7 helicase by association with Cdc45 and GINS proteins
-
I. Ilves, T. Petojevic, J.J. Pesavento, and M.R. Botchan Activation of the MCM2-7 helicase by association with Cdc45 and GINS proteins Mol. Cell 37 2010 247 258
-
(2010)
Mol. Cell
, vol.37
, pp. 247-258
-
-
Ilves, I.1
Petojevic, T.2
Pesavento, J.J.3
Botchan, M.R.4
-
23
-
-
84867538324
-
The hexameric helicase DnaB adopts a nonplanar conformation during translocation
-
O. Itsathitphaisarn, R.A. Wing, W.K. Eliason, J. Wang, and T.A. Steitz The hexameric helicase DnaB adopts a nonplanar conformation during translocation Cell 151 2012 267 277
-
(2012)
Cell
, vol.151
, pp. 267-277
-
-
Itsathitphaisarn, O.1
Wing, R.A.2
Eliason, W.K.3
Wang, J.4
Steitz, T.A.5
-
24
-
-
1642325936
-
Evolutionary history and higher order classification of AAA+ ATPases
-
L.M. Iyer, D.D. Leipe, E.V. Koonin, and L. Aravind Evolutionary history and higher order classification of AAA+ ATPases J. Struct. Biol. 146 2004 11 31
-
(2004)
J. Struct. Biol.
, vol.146
, pp. 11-31
-
-
Iyer, L.M.1
Leipe, D.D.2
Koonin, E.V.3
Aravind, L.4
-
25
-
-
0037515607
-
Ordered ATP hydrolysis in the gamma complex clamp loader AAA+ machine
-
A. Johnson, and M. O'Donnell Ordered ATP hydrolysis in the gamma complex clamp loader AAA+ machine J. Biol. Chem. 278 2003 14406 14413
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 14406-14413
-
-
Johnson, A.1
O'Donnell, M.2
-
26
-
-
41249097479
-
Structural basis of mechanochemical coupling in a hexameric molecular motor
-
D.E. Kainov, E.J. Mancini, J. Telenius, J. Lísal, J.M. Grimes, D.H. Bamford, D.I. Stuart, and R. Tuma Structural basis of mechanochemical coupling in a hexameric molecular motor J. Biol. Chem. 283 2008 3607 3617
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 3607-3617
-
-
Kainov, D.E.1
Mancini, E.J.2
Telenius, J.3
Lísal, J.4
Grimes, J.M.5
Bamford, D.H.6
Stuart, D.I.7
Tuma, R.8
-
27
-
-
53649110433
-
An objective, model-independent method for detection of non-uniform steps in noisy signals
-
B. Kalafut, and K. Visscher An objective, model-independent method for detection of non-uniform steps in noisy signals Comput. Phys. Commun. 179 2008 716 723
-
(2008)
Comput. Phys. Commun.
, vol.179
, pp. 716-723
-
-
Kalafut, B.1
Visscher, K.2
-
29
-
-
4544386863
-
Atomic snapshots of an RNA packaging motor reveal conformational changes linking ATP hydrolysis to RNA translocation
-
E.J. Mancini, D.E. Kainov, J.M. Grimes, R. Tuma, D.H. Bamford, and D.I. Stuart Atomic snapshots of an RNA packaging motor reveal conformational changes linking ATP hydrolysis to RNA translocation Cell 118 2004 743 755
-
(2004)
Cell
, vol.118
, pp. 743-755
-
-
Mancini, E.J.1
Kainov, D.E.2
Grimes, J.M.3
Tuma, R.4
Bamford, D.H.5
Stuart, D.I.6
-
30
-
-
27144474906
-
Rebuilt AAA + motors reveal operating principles for ATP-fuelled machines
-
A. Martin, T.A. Baker, and R.T. Sauer Rebuilt AAA + motors reveal operating principles for ATP-fuelled machines Nature 437 2005 1115 1120
-
(2005)
Nature
, vol.437
, pp. 1115-1120
-
-
Martin, A.1
Baker, T.A.2
Sauer, R.T.3
-
31
-
-
33746987484
-
Double-stranded DNA translocation: Structure and mechanism of hexameric FtsK
-
T.H. Massey, C.P. Mercogliano, J. Yates, D.J. Sherratt, and J. Löwe Double-stranded DNA translocation: structure and mechanism of hexameric FtsK Mol. Cell 23 2006 457 469
-
(2006)
Mol. Cell
, vol.23
, pp. 457-469
-
-
Massey, T.H.1
Mercogliano, C.P.2
Yates, J.3
Sherratt, D.J.4
Löwe, J.5
-
32
-
-
58749087869
-
Intersubunit coordination in a homomeric ring ATPase
-
J.R. Moffitt, Y.R. Chemla, K. Aathavan, S. Grimes, P.J. Jardine, D.L. Anderson, and C. Bustamante Intersubunit coordination in a homomeric ring ATPase Nature 457 2009 446 450
-
(2009)
Nature
, vol.457
, pp. 446-450
-
-
Moffitt, J.R.1
Chemla, Y.R.2
Aathavan, K.3
Grimes, S.4
Jardine, P.J.5
Anderson, D.L.6
Bustamante, C.7
-
34
-
-
48149087104
-
Defining molecular and domain boundaries in the bacteriophage phi29 DNA packaging motor
-
M.C. Morais, J.S. Koti, V.D. Bowman, E. Reyes-Aldrete, D.L. Anderson, and M.G. Rossmann Defining molecular and domain boundaries in the bacteriophage phi29 DNA packaging motor Structure 16 2008 1267 1274
-
(2008)
Structure
, vol.16
, pp. 1267-1274
-
-
Morais, M.C.1
Koti, J.S.2
Bowman, V.D.3
Reyes-Aldrete, E.4
Anderson, D.L.5
Rossmann, M.G.6
-
35
-
-
35348971984
-
ATPase site architecture and helicase mechanism of an archaeal MCM
-
M.J. Moreau, A.T. McGeoch, A.R. Lowe, L.S. Itzhaki, and S.D. Bell ATPase site architecture and helicase mechanism of an archaeal MCM Mol. Cell 28 2007 304 314
-
(2007)
Mol. Cell
, vol.28
, pp. 304-314
-
-
Moreau, M.J.1
McGeoch, A.T.2
Lowe, A.R.3
Itzhaki, L.S.4
Bell, S.D.5
-
36
-
-
55649098814
-
Structural synergy and molecular crosstalk between bacterial helicase loaders and replication initiators
-
M.L. Mott, J.P. Erzberger, M.M. Coons, and J.M. Berger Structural synergy and molecular crosstalk between bacterial helicase loaders and replication initiators Cell 135 2008 623 634
-
(2008)
Cell
, vol.135
, pp. 623-634
-
-
Mott, M.L.1
Erzberger, J.P.2
Coons, M.M.3
Berger, J.M.4
-
37
-
-
57649226492
-
The bacteriophage DNA packaging motor
-
V.B. Rao, and M. Feiss The bacteriophage DNA packaging motor Annu. Rev. Genet. 42 2008 647 681
-
(2008)
Annu. Rev. Genet.
, vol.42
, pp. 647-681
-
-
Rao, V.B.1
Feiss, M.2
-
40
-
-
0034460877
-
Vanadate-induced trapping of nucleotides by purified maltose transport complex requires ATP hydrolysis
-
S. Sharma, and A.L. Davidson Vanadate-induced trapping of nucleotides by purified maltose transport complex requires ATP hydrolysis J. Bacteriol. 182 2000 6570 6576
-
(2000)
J. Bacteriol.
, vol.182
, pp. 6570-6576
-
-
Sharma, S.1
Davidson, A.L.2
-
41
-
-
0034625236
-
Crystal structure of T7 gene 4 ring helicase indicates a mechanism for sequential hydrolysis of nucleotides
-
M.R. Singleton, M.R. Sawaya, T. Ellenberger, and D.B. Wigley Crystal structure of T7 gene 4 ring helicase indicates a mechanism for sequential hydrolysis of nucleotides Cell 101 2000 589 600
-
(2000)
Cell
, vol.101
, pp. 589-600
-
-
Singleton, M.R.1
Sawaya, M.R.2
Ellenberger, T.3
Wigley, D.B.4
-
42
-
-
34548638261
-
Structure and mechanism of helicases and nucleic acid translocases
-
M.R. Singleton, M.S. Dillingham, and D.B. Wigley Structure and mechanism of helicases and nucleic acid translocases Annu. Rev. Biochem. 76 2007 23 50
-
(2007)
Annu. Rev. Biochem.
, vol.76
, pp. 23-50
-
-
Singleton, M.R.1
Dillingham, M.S.2
Wigley, D.B.3
-
43
-
-
0037559627
-
Structure of the Rho transcription terminator: Mechanism of mRNA recognition and helicase loading
-
E. Skordalakes, and J.M. Berger Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading Cell 114 2003 135 146
-
(2003)
Cell
, vol.114
, pp. 135-146
-
-
Skordalakes, E.1
Berger, J.M.2
-
44
-
-
57649228017
-
The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces
-
S. Sun, K. Kondabagil, B. Draper, T.I. Alam, V.D. Bowman, Z. Zhang, S. Hegde, A. Fokine, M.G. Rossmann, and V.B. Rao The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces Cell 135 2008 1251 1262
-
(2008)
Cell
, vol.135
, pp. 1251-1262
-
-
Sun, S.1
Kondabagil, K.2
Draper, B.3
Alam, T.I.4
Bowman, V.D.5
Zhang, Z.6
Hegde, S.7
Fokine, A.8
Rossmann, M.G.9
Rao, V.B.10
-
45
-
-
70350344051
-
Running in reverse: The structural basis for translocation polarity in hexameric helicases
-
N.D. Thomsen, and J.M. Berger Running in reverse: the structural basis for translocation polarity in hexameric helicases Cell 139 2009 523 534
-
(2009)
Cell
, vol.139
, pp. 523-534
-
-
Thomsen, N.D.1
Berger, J.M.2
-
46
-
-
0032547899
-
Energy transduction in the F1 motor of ATP synthase
-
H. Wang, and G. Oster Energy transduction in the F1 motor of ATP synthase Nature 396 1998 279 282
-
(1998)
Nature
, vol.396
, pp. 279-282
-
-
Wang, H.1
Oster, G.2
-
47
-
-
0347724057
-
A minimal kinetic model for a viral DNA packaging machine
-
Q. Yang, and C.E. Catalano A minimal kinetic model for a viral DNA packaging machine Biochemistry 43 2004 289 299
-
(2004)
Biochemistry
, vol.43
, pp. 289-299
-
-
Yang, Q.1
Catalano, C.E.2
-
48
-
-
77953811389
-
Mechanochemistry of a viral DNA packaging motor
-
J. Yu, J. Moffitt, C.L. Hetherington, C. Bustamante, and G. Oster Mechanochemistry of a viral DNA packaging motor J. Mol. Biol. 400 2010 186 203
-
(2010)
J. Mol. Biol.
, vol.400
, pp. 186-203
-
-
Yu, J.1
Moffitt, J.2
Hetherington, C.L.3
Bustamante, C.4
Oster, G.5
-
49
-
-
52949145603
-
Role of the CCA bulge of prohead RNA of bacteriophage o29 in DNA packaging
-
W. Zhao, M.C. Morais, D.L. Anderson, P.J. Jardine, and S. Grimes Role of the CCA bulge of prohead RNA of bacteriophage o29 in DNA packaging J. Mol. Biol. 383 2008 520 528
-
(2008)
J. Mol. Biol.
, vol.383
, pp. 520-528
-
-
Zhao, W.1
Morais, M.C.2
Anderson, D.L.3
Jardine, P.J.4
Grimes, S.5
-
50
-
-
24144478521
-
Mechanism of force generation of a viral DNA packaging motor
-
Chemla, Y.R.; Aathavan, K.; Michaelis, J.; Grimes, S.; Jardine, P.J.; Anderson, D.L.; and Bustamante, C. (2005). Mechanism of force generation of a viral DNA packaging motor. Cell 122, 683-692.
-
(2005)
Cell
, vol.122
, pp. 683-692
-
-
Chemla, Y.R.1
Aathavan, K.2
Michaelis, J.3
Grimes, S.4
Jardine, P.J.5
Anderson, D.L.6
Bustamante, C.7
-
51
-
-
53649110433
-
An objective, model-independent method for detection of non-uniform steps in noisy signals
-
Kalafut, B.; and Visscher, K. (2008). An objective, model-independent method for detection of non-uniform steps in noisy signals. Comput. Phys. Commun. 179, 716-723.
-
(2008)
Comput. Phys. Commun.
, vol.179
, pp. 716-723
-
-
Kalafut, B.1
Visscher, K.2
-
52
-
-
58749087869
-
Intersubunit coordination in a homomeric ring ATPase
-
Moffitt, J.R.; Chemla, Y.R.; Aathavan, K.; Grimes, S.; Jardine, P.J.; Anderson, D.L.; and Bustamante, C. (2009). Intersubunit coordination in a homomeric ring ATPase. Nature 457, 446-450.
-
(2009)
Nature
, vol.457
, pp. 446-450
-
-
Moffitt, J.R.1
Chemla, Y.R.2
Aathavan, K.3
Grimes, S.4
Jardine, P.J.5
Anderson, D.L.6
Bustamante, C.7
-
53
-
-
77957689590
-
Mechanistic constraints from the substrate concentration dependence of enzymatic fluctuations
-
Moffitt, J.R.; Chemla, Y.R.; and Bustamante, C. (2010). Mechanistic constraints from the substrate concentration dependence of enzymatic fluctuations. Proc. Natl. Acad. Sci. USA 107, 15739-15744.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 15739-15744
-
-
Moffitt, J.R.1
Chemla, Y.R.2
Bustamante, C.3
|