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Volumn 110, Issue 2, 2012, Pages 349-360

Combined in silico/in vivo analysis of mechanisms providing for root apical meristem self-organization and maintenance

Author keywords

Arabidopsis thaliana; Auxin response; Mathematical model; Patterning; Reflected flow; Reverse fountain; Root apical meristem

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 84869874424     PISSN: 03057364     EISSN: 10958290     Source Type: Journal    
DOI: 10.1093/aob/mcs069     Document Type: Article
Times cited : (39)

References (56)
  • 1
    • 84866060977 scopus 로고    scopus 로고
    • Multiscale modelling of auxin transport in the plant-root elongation zone
    • Band LR, King JR. 2011. Multiscale modelling of auxin transport in the plant-root elongation zone. Journal of Mathematical Biology, doi:10.1007/s00285-011-0472-y. http://www.springerlink.com/content/x74n1467354q6075/.
    • (2011) Journal of Mathematical Biology
    • Band, L.R.1    King, J.R.2
  • 2
    • 78049466322 scopus 로고    scopus 로고
    • Shootward and rootward: Peak terminology for plant polarity
    • Baskin T, Peret B, Baluška F, et al. 2010. Shootward and rootward: peak terminology for plant polarity. Trends in Plant Science 15: 593-594.
    • (2010) Trends in Plant Science , vol.15 , pp. 593-594
    • Baskin, T.1    Peret, B.2    Baluška, F.3
  • 3
    • 59949101853 scopus 로고    scopus 로고
    • Integration of transport-based models for phyllotaxis and midvein formation
    • Bayer EM, Smith RS, Mandel T, et al. 2009. Integration of transport-based models for phyllotaxis and midvein formation. Genes and Development 23: 373-384.
    • (2009) Genes and Development , vol.23 , pp. 373-384
    • Bayer, E.M.1    Smith, R.S.2    Mandel, T.3
  • 4
    • 0345167799 scopus 로고    scopus 로고
    • Local, efflux-dependent auxin gradients as a common module for plant organ formation
    • Benkova E, Michniewicz M, Sauer M, et al. 2003. Local, efflux-dependent auxin gradients as a common module for plant organ formation. Cell 115: 591-602.
    • (2003) Cell , vol.115 , pp. 591-602
    • Benkova, E.1    Michniewicz, M.2    Sauer, M.3
  • 6
    • 0029811396 scopus 로고    scopus 로고
    • Arabidopsis AUX1 gene: A permease-like regulator of root gravitropism
    • Bennett MJ, Marchant A, Green HG, et al. 1996. Arabidopsis AUX1 gene: a permease-like regulator of root gravitropism. Science 273: 948-950.
    • (1996) Science , vol.273 , pp. 948-950
    • Bennett, M.J.1    Marchant, A.2    Green, H.G.3
  • 7
    • 19944428972 scopus 로고    scopus 로고
    • The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots
    • Blilou I, Xu J, Wildwater M, et al. 2005. The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots. Nature 433: 39-44.
    • (2005) Nature , vol.433 , pp. 39-44
    • Blilou, I.1    Xu, J.2    Wildwater, M.3
  • 8
    • 84856500542 scopus 로고    scopus 로고
    • A novel sensor to map auxin response and distribution at high spatio-temporal resolution
    • Brunoud G, Wells D, Oliva M, et al. 2012. A novel sensor to map auxin response and distribution at high spatio-temporal resolution. Nature 482: 103-106.
    • (2012) Nature , vol.482 , pp. 103-106
    • Brunoud, G.1    Wells, D.2    Oliva, M.3
  • 10
    • 0027165869 scopus 로고
    • Cellular organisation of the Arabidopsis thaliana root
    • Dolan L, Janmaat K, Willemsen V, et al. 1993. Cellular organisation of the Arabidopsis thaliana root. Development 119: 71-84.
    • (1993) Development , vol.119 , pp. 71-84
    • Dolan, L.1    Janmaat, K.2    Willemsen, V.3
  • 11
    • 84981283347 scopus 로고
    • Auxin biosynthesis and metabolism in isolated roots of Zea mays
    • Feldman LJ 1980. Auxin biosynthesis and metabolism in isolated roots of Zea mays. Physiologia Plantarum 49: 45-150.
    • (1980) Physiologia Plantarum , vol.49 , pp. 45-150
    • Feldman, L.J.1
  • 12
    • 33750006337 scopus 로고    scopus 로고
    • How canalization can make loops: A new model of reticulated leaf vascular pattern formation
    • Feugier FG, Iwasa Y. 2006. How canalization can make loops: a new model of reticulated leaf vascular pattern formation. Journal of Theoretical Biology 243: 235-244.
    • (2006) Journal of Theoretical Biology , vol.243 , pp. 235-244
    • Feugier, F.G.1    Iwasa, Y.2
  • 13
    • 18344379498 scopus 로고    scopus 로고
    • AtPIN4 mediates sink-driven auxin gradients and root patterning in Arabidopsis
    • Friml J, Benkova E, Blilou I, et al. 2002. AtPIN4 mediates sink-driven auxin gradients and root patterning in Arabidopsis. Cell 108: 661-673.
    • (2002) Cell , vol.108 , pp. 661-673
    • Friml, J.1    Benkova, E.2    Blilou, I.3
  • 14
    • 0345064191 scopus 로고    scopus 로고
    • Efflux-dependent auxin gradients establish the apical-basal axis of Arabidopsis
    • Friml J, Vieten A, Sauer M, et al. 2003. Efflux-dependent auxin gradients establish the apical-basal axis of Arabidopsis. Nature 426: 147-153.
    • (2003) Nature , vol.426 , pp. 147-153
    • Friml, J.1    Vieten, A.2    Sauer, M.3
  • 15
    • 31844437609 scopus 로고    scopus 로고
    • The ABC of auxin transport: The role of p-glycoproteins in plant development
    • Geisler M, Murphy AS. 2006. The ABC of auxin transport: the role of p-glycoproteins in plant development. FEBS Letters 580: 1094-1102.
    • (2006) FEBS Letters , vol.580 , pp. 1094-1102
    • Geisler, M.1    Murphy, A.S.2
  • 16
    • 35548964342 scopus 로고    scopus 로고
    • Auxin transport is sufficient to generate a maximum and gradient guiding root growth
    • Grieneisen VA, Xu J, Mareé AF, Hogeweg P, Scheres B. 2007. Auxin transport is sufficient to generate a maximum and gradient guiding root growth. Nature 449: 1008-1013.
    • (2007) Nature , vol.449 , pp. 1008-1013
    • Grieneisen, V.A.1    Xu, J.2    Mareé, A.F.3    Hogeweg, P.4    Scheres, B.5
  • 17
    • 67349090679 scopus 로고    scopus 로고
    • Local auxin biosynthesis modulates gradient-directed planar polarity in Arabidopsis
    • Ikeda Y, Men S, Fischer U, et al. 2009. Local auxin biosynthesis modulates gradient-directed planar polarity in Arabidopsis. Nature Cell Biology 11: 731-738.
    • (2009) Nature Cell Biology , vol.11 , pp. 731-738
    • Ikeda, Y.1    Men, S.2    Fischer, U.3
  • 18
    • 35648997836 scopus 로고    scopus 로고
    • Oxidative stress and formation and maintenance of root stem cells
    • Ivanov VB 2007. Oxidative stress and formation and maintenance of root stem cells. Biochemistry (Moscow) 72: 1110-1114.
    • (2007) Biochemistry (Moscow) , vol.72 , pp. 1110-1114
    • Ivanov, V.B.1
  • 21
    • 79960512557 scopus 로고    scopus 로고
    • YUCCA6 over-expression demonstrates auxin function in delaying leaf senescence in Arabidopsis thaliana
    • Kim JI, Murphy AS, Baek D, et al. 2011. YUCCA6 over-expression demonstrates auxin function in delaying leaf senescence in Arabidopsis thaliana. Journal of Experimental Botany 62: 3981-3992.
    • (2011) Journal of Experimental Botany , vol.62 , pp. 3981-3992
    • Kim, J.I.1    Murphy, A.S.2    Baek, D.3
  • 22
    • 58149153143 scopus 로고    scopus 로고
    • Root system architecture from coupling cell shape to auxin transport
    • Laskowski M, Grieneisen VA, Hofhuis H, et al. 2008. Root system architecture from coupling cell shape to auxin transport. PLoS Biology 6: e307. http://dx.doi.org/10.1371/journal.pbio.0060307.
    • (2008) PLoS Biology , vol.6 , pp. e307
    • Laskowski, M.1    Grieneisen, V.A.2    Hofhuis, H.3
  • 23
    • 77951995466 scopus 로고    scopus 로고
    • Sugar levels regulate tryptophan-dependent auxin biosynthesis in developing maize kernels
    • LeClere S, Schmelz E, Chourey P. 2010. Sugar levels regulate tryptophan-dependent auxin biosynthesis in developing maize kernels. Plant Physiology 153: 306-318.
    • (2010) Plant Physiology , vol.153 , pp. 306-318
    • LeClere, S.1    Schmelz, E.2    Chourey, P.3
  • 26
    • 0035999449 scopus 로고    scopus 로고
    • Biosynthesis, conjugation, catabolism and homeostasis of indole-3-acetic acid in Arabidopsis thaliana
    • Ljung K, Hull AK, Kowalczyk M, et al. 2002. Biosynthesis, conjugation, catabolism and homeostasis of indole-3-acetic acid in Arabidopsis thaliana. Plant Molecular Biology 49: 249-272.
    • (2002) Plant Molecular Biology , vol.49 , pp. 249-272
    • Ljung, K.1    Hull, A.K.2    Kowalczyk, M.3
  • 27
    • 22144471286 scopus 로고    scopus 로고
    • Sites and regulation of auxin biosynthesis in Arabidopsis roots
    • Ljung K, Hull AK, Celenza J, et al. 2005. Sites and regulation of auxin biosynthesis in Arabidopsis roots. The Plant Cell 17: 1090-1104.
    • (2005) The Plant Cell , vol.17 , pp. 1090-1104
    • Ljung, K.1    Hull, A.K.2    Celenza, J.3
  • 28
    • 77954683799 scopus 로고    scopus 로고
    • A plausible mechanism for auxin patterning along the developing root
    • Mironova VV, Omelyanchuk NA, Yosiphon G, et al. 2010. A plausible mechanism for auxin patterning along the developing root. BMC Systems Biology 4: 98. http://dx.doi:10.1186/1752-0509-4-98.
    • (2010) BMC Systems Biology , vol.4 , pp. 98
    • Mironova, V.V.1    Omelyanchuk, N.A.2    Yosiphon, G.3
  • 30
    • 21744449197 scopus 로고    scopus 로고
    • Auxin inhibits endocytosis and promotes its own efflux from cells
    • Paciorek T, Zazímalová E, Ruthardt N, et al. 2005. Auxin inhibits endocytosis and promotes its own efflux from cells. Nature 435: 1251-1256.
    • (2005) Nature , vol.435 , pp. 1251-1256
    • Paciorek, T.1    Zazímalová, E.2    Ruthardt, N.3
  • 32
    • 70349260208 scopus 로고    scopus 로고
    • An auxin gradient and maximum in the Arabidopsis root apex shown by high-resolution cellspecific analysis of IAA distribution and synthesis
    • Petersson S, Johansson A, Kowalczyk M, et al. 2009. An auxin gradient and maximum in the Arabidopsis root apex shown by high-resolution cellspecific analysis of IAA distribution and synthesis. The Plant Cell 21: 1659-1668.
    • (2009) The Plant Cell , vol.21 , pp. 1659-1668
    • Petersson, S.1    Johansson, A.2    Kowalczyk, M.3
  • 33
    • 33646547313 scopus 로고    scopus 로고
    • PIN proteins perform a ratelimiting function in cellular auxin efflux
    • Petrásek J, Mravec J, Bouchard R, et al. 2006. PIN proteins perform a ratelimiting function in cellular auxin efflux. Science 312: 914-918.
    • (2006) Science , vol.312 , pp. 914-918
    • Petrásek, J.1    Mravec, J.2    Bouchard, R.3
  • 35
    • 0007210189 scopus 로고
    • 14C from exogenous labeled auxin in lateral root primordial of intact pea seedlings (Pisum sativum L.)
    • 14C from exogenous labeled auxin in lateral root primordial of intact pea seedlings (Pisum sativum L.). Planta 144: 463-466.
    • (1979) Planta , vol.144 , pp. 463-466
    • Rowntree, R.A.1    Morris, D.A.2
  • 36
    • 0033601101 scopus 로고    scopus 로고
    • An auxin-dependent distal organizer of pattern and polarity in the Arabidopsis root
    • Sabatini S, Beis D, Wolkenfelt H, et al. 1999. An auxin-dependent distal organizer of pattern and polarity in the Arabidopsis root. Cell 99: 463-472.
    • (1999) Cell , vol.99 , pp. 463-472
    • Sabatini, S.1    Beis, D.2    Wolkenfelt, H.3
  • 37
    • 63549137884 scopus 로고    scopus 로고
    • Regulated transport as a mechanism for pattern generation: Capabilities for phyllotaxis and beyond
    • Sahlin P, Söderberg B, Jönsson H. 2009. Regulated transport as a mechanism for pattern generation: capabilities for phyllotaxis and beyond. Journal of Theoretical Biology 258: 60-70.
    • (2009) Journal of Theoretical Biology , vol.258 , pp. 60-70
    • Sahlin, P.1    Söderberg, B.2    Jönsson, H.3
  • 38
    • 33751111994 scopus 로고    scopus 로고
    • Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity
    • Sauer M, Balla J, Luschnig C, et al. 2006. Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity. Genes & Development 20: 2902-2911.
    • (2006) Genes & Development , vol.20 , pp. 2902-2911
    • Sauer, M.1    Balla, J.2    Luschnig, C.3
  • 40
    • 61349111993 scopus 로고    scopus 로고
    • Organ regeneration does not require a functional stem cell niche in plants
    • Sena G, Wang X, Liu H, Hofhuis H, Birnbaum KD. 2009. Organ regeneration does not require a functional stem cell niche in plants. Nature 457: 1150-1153.
    • (2009) Nature , vol.457 , pp. 1150-1153
    • Sena, G.1    Wang, X.2    Liu, H.3    Hofhuis, H.4    Birnbaum, K.D.5
  • 41
    • 77952929656 scopus 로고    scopus 로고
    • Auxin biosynthesis inhibitors, identified by a genomics-based approach, provide insights into auxin biosynthesis
    • Soeno K, Goda H, Ishii T, et al. 2010. Auxin biosynthesis inhibitors, identified by a genomics-based approach, provide insights into auxin biosynthesis. Plant Cell Physiology 51: 524-536.
    • (2010) Plant Cell Physiology , vol.51 , pp. 524-536
    • Soeno, K.1    Goda, H.2    Ishii, T.3
  • 42
    • 41149143843 scopus 로고    scopus 로고
    • TAA1-mediated auxin biosynthesis is essential for hormone crosstalk and plant development
    • Stepanova AN, Robertson-Hoyt J, Yun J, et al. 2008. TAA1-mediated auxin biosynthesis is essential for hormone crosstalk and plant development. Cell 133: 177-191.
    • (2008) Cell , vol.133 , pp. 177-191
    • Stepanova, A.N.1    Robertson-Hoyt, J.2    Yun, J.3
  • 43
    • 0346783322 scopus 로고    scopus 로고
    • Auxin transport: The fountain of life in plants?
    • Swarup R, Bennett M. 2003. Auxin transport: the fountain of life in plants? Developmental Cell 5: 824-826.
    • (2003) Developmental Cell , vol.5 , pp. 824-826
    • Swarup, R.1    Bennett, M.2
  • 44
    • 33644764962 scopus 로고    scopus 로고
    • Root gravitropism requires lateral root cap and epidermal cells for transport and response to a mobile auxin signal
    • Swarup R, Kramer E, Perry P, et al. 2005. Root gravitropism requires lateral root cap and epidermal cells for transport and response to a mobile auxin signal. Nature Cell Biology 7: 1057-1065.
    • (2005) Nature Cell Biology , vol.7 , pp. 1057-1065
    • Swarup, R.1    Kramer, E.2    Perry, P.3
  • 45
    • 0036490592 scopus 로고    scopus 로고
    • Indole-3-acetic acid biosynthesis in isolated axes from germinating beans seeds: The effect of wounding on the biosynthetic pathway
    • Sztein AE, Ilic N, Cohen JD, Cooke TJ. 2002. Indole-3-acetic acid biosynthesis in isolated axes from germinating beans seeds: the effect of wounding on the biosynthetic pathway. Plant Growth Regulation 36: 201-207.
    • (2002) Plant Growth Regulation , vol.36 , pp. 201-207
    • Sztein, A.E.1    Ilic, N.2    Cohen, J.D.3    Cooke, T.J.4
  • 46
    • 33845488306 scopus 로고    scopus 로고
    • Spatiotemporal asymmetric auxin distribution: A means to coordinate plant development
    • Tanaka H, Dhonukshe P, Brewer P, Friml J. 2006. Spatiotemporal asymmetric auxin distribution: a means to coordinate plant development. Cellular and Molecular Life Sciences 63: 2738-2754
    • (2006) Cellular and Molecular Life Sciences , vol.63 , pp. 2738-2754
    • Tanaka, H.1    Dhonukshe, P.2    Brewer, P.3    Friml, J.4
  • 47
    • 0005994828 scopus 로고
    • Auxin control of vascular pattern formation in regenerating pea root meristems grown in vitro
    • Torrey JG 1957. Auxin control of vascular pattern formation in regenerating pea root meristems grown in vitro. American Journal of Botany 44: 859-870.
    • (1957) American Journal of Botany , vol.44 , pp. 859-870
    • Torrey, J.G.1
  • 48
    • 76649136624 scopus 로고    scopus 로고
    • The AUX1 LAX family of auxin influx carriers is required for the establishment of embryonic root cell organization in Arabidopsis thaliana
    • Ugartechea-Chirino Y, Swarup R, Swarup K. 2010. The AUX1 LAX family of auxin influx carriers is required for the establishment of embryonic root cell organization in Arabidopsis thaliana. Annals of Botany 105: 277-289.
    • (2010) Annals of Botany , vol.105 , pp. 277-289
    • Ugartechea-Chirino, Y.1    Swarup, R.2    Swarup, K.3
  • 49
    • 0031277708 scopus 로고    scopus 로고
    • Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements
    • Ulmasov T, Murfett J, Hagen G, Guilfoyle T. 1997. Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements. The Plant Cell 9: 1963-1971.
    • (1997) The Plant Cell , vol.9 , pp. 1963-1971
    • Ulmasov, T.1    Murfett, J.2    Hagen, G.3    Guilfoyle, T.4
  • 50
    • 27744545648 scopus 로고    scopus 로고
    • Functional redundancy of PIN proteins is accompanied by auxin dependent cross-regulation of PIN expression
    • Vieten A, Vanneste S, Wisniewska J, et al. 2005. Functional redundancy of PIN proteins is accompanied by auxin dependent cross-regulation of PIN expression. Development 132: 4521-4531.
    • (2005) Development , vol.132 , pp. 4521-4531
    • Vieten, A.1    Vanneste, S.2    Wisniewska, J.3
  • 51
    • 78650647021 scopus 로고    scopus 로고
    • Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling
    • Wabnik K, Kleine-Vehn J, Balla J, et al. 2010. Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling. Molecular Systems Biology 6: 447. http://dx.doi.org/10.1038/msb.2010.103.
    • (2010) Molecular Systems Biology , vol.6 , pp. 447
    • Wabnik, K.1    Kleine-Vehn, J.2    Balla, J.3
  • 52
    • 33646562869 scopus 로고    scopus 로고
    • Polar PIN localization directs auxin flow in plants
    • Wisniewska J, Xu J, Seifertova D, et al. 2006. Polar PIN localization directs auxin flow in plants. Science 312: 858-860.
    • (2006) Science , vol.312 , pp. 858-860
    • Wisniewska, J.1    Xu, J.2    Seifertova, D.3
  • 53
    • 78650270952 scopus 로고    scopus 로고
    • Positional information and patterning revisited
    • Wolpert L. 2011. Positional information and patterning revisited. Journal of Theoretical Biology 269: 359-365.
    • (2011) Journal of Theoretical Biology , vol.269 , pp. 359-365
    • Wolpert, L.1
  • 54
    • 19544366287 scopus 로고    scopus 로고
    • Auxin: Regulation, action, and interaction
    • Woodward AW, Bartel B. 2005. Auxin: regulation, action, and interaction. Annals of Botany 95: 707-735.
    • (2005) Annals of Botany , vol.95 , pp. 707-735
    • Woodward, A.W.1    Bartel, B.2


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