-
1
-
-
84866060977
-
Multiscale modelling of auxin transport in the plant-root elongation zone
-
Band LR, King JR. 2011. Multiscale modelling of auxin transport in the plant-root elongation zone. Journal of Mathematical Biology, doi:10.1007/s00285-011-0472-y. http://www.springerlink.com/content/x74n1467354q6075/.
-
(2011)
Journal of Mathematical Biology
-
-
Band, L.R.1
King, J.R.2
-
2
-
-
78049466322
-
Shootward and rootward: Peak terminology for plant polarity
-
Baskin T, Peret B, Baluška F, et al. 2010. Shootward and rootward: peak terminology for plant polarity. Trends in Plant Science 15: 593-594.
-
(2010)
Trends in Plant Science
, vol.15
, pp. 593-594
-
-
Baskin, T.1
Peret, B.2
Baluška, F.3
-
3
-
-
59949101853
-
Integration of transport-based models for phyllotaxis and midvein formation
-
Bayer EM, Smith RS, Mandel T, et al. 2009. Integration of transport-based models for phyllotaxis and midvein formation. Genes and Development 23: 373-384.
-
(2009)
Genes and Development
, vol.23
, pp. 373-384
-
-
Bayer, E.M.1
Smith, R.S.2
Mandel, T.3
-
4
-
-
0345167799
-
Local, efflux-dependent auxin gradients as a common module for plant organ formation
-
Benkova E, Michniewicz M, Sauer M, et al. 2003. Local, efflux-dependent auxin gradients as a common module for plant organ formation. Cell 115: 591-602.
-
(2003)
Cell
, vol.115
, pp. 591-602
-
-
Benkova, E.1
Michniewicz, M.2
Sauer, M.3
-
5
-
-
63549089334
-
A morphogenetic trigger: Is there an emerging concept in plant developmental biology?
-
Benkova E, Ivanchenko MG, Friml J, Shishkova S, Dubrovsky JG. 2009. A morphogenetic trigger: is there an emerging concept in plant developmental biology? Trends in Plant Science 14: 189-193.
-
(2009)
Trends in Plant Science
, vol.14
, pp. 189-193
-
-
Benkova, E.1
Ivanchenko, M.G.2
Friml, J.3
Shishkova, S.4
Dubrovsky, J.G.5
-
6
-
-
0029811396
-
Arabidopsis AUX1 gene: A permease-like regulator of root gravitropism
-
Bennett MJ, Marchant A, Green HG, et al. 1996. Arabidopsis AUX1 gene: a permease-like regulator of root gravitropism. Science 273: 948-950.
-
(1996)
Science
, vol.273
, pp. 948-950
-
-
Bennett, M.J.1
Marchant, A.2
Green, H.G.3
-
7
-
-
19944428972
-
The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots
-
Blilou I, Xu J, Wildwater M, et al. 2005. The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots. Nature 433: 39-44.
-
(2005)
Nature
, vol.433
, pp. 39-44
-
-
Blilou, I.1
Xu, J.2
Wildwater, M.3
-
8
-
-
84856500542
-
A novel sensor to map auxin response and distribution at high spatio-temporal resolution
-
Brunoud G, Wells D, Oliva M, et al. 2012. A novel sensor to map auxin response and distribution at high spatio-temporal resolution. Nature 482: 103-106.
-
(2012)
Nature
, vol.482
, pp. 103-106
-
-
Brunoud, G.1
Wells, D.2
Oliva, M.3
-
9
-
-
34249099170
-
Remote large data visualization in the ParaView framework
-
Heirich A, Raffin B, dos Santos LP. eds. Geneva: Eurographics
-
Cedilnik A, Geveci B, Moreland K, Ahrens J, Favre J. 2006. Remote large data visualization in the ParaView framework. In: Heirich A, Raffin B, dos Santos LP. eds. Eurographics Symposium on Parallel Graphics and Visualization. Geneva: Eurographics, 162-170.
-
(2006)
Eurographics Symposium on Parallel Graphics and Visualization
, pp. 162-170
-
-
Cedilnik, A.1
Geveci, B.2
Moreland, K.3
Ahrens, J.4
Favre, J.5
-
10
-
-
0027165869
-
Cellular organisation of the Arabidopsis thaliana root
-
Dolan L, Janmaat K, Willemsen V, et al. 1993. Cellular organisation of the Arabidopsis thaliana root. Development 119: 71-84.
-
(1993)
Development
, vol.119
, pp. 71-84
-
-
Dolan, L.1
Janmaat, K.2
Willemsen, V.3
-
11
-
-
84981283347
-
Auxin biosynthesis and metabolism in isolated roots of Zea mays
-
Feldman LJ 1980. Auxin biosynthesis and metabolism in isolated roots of Zea mays. Physiologia Plantarum 49: 45-150.
-
(1980)
Physiologia Plantarum
, vol.49
, pp. 45-150
-
-
Feldman, L.J.1
-
12
-
-
33750006337
-
How canalization can make loops: A new model of reticulated leaf vascular pattern formation
-
Feugier FG, Iwasa Y. 2006. How canalization can make loops: a new model of reticulated leaf vascular pattern formation. Journal of Theoretical Biology 243: 235-244.
-
(2006)
Journal of Theoretical Biology
, vol.243
, pp. 235-244
-
-
Feugier, F.G.1
Iwasa, Y.2
-
13
-
-
18344379498
-
AtPIN4 mediates sink-driven auxin gradients and root patterning in Arabidopsis
-
Friml J, Benkova E, Blilou I, et al. 2002. AtPIN4 mediates sink-driven auxin gradients and root patterning in Arabidopsis. Cell 108: 661-673.
-
(2002)
Cell
, vol.108
, pp. 661-673
-
-
Friml, J.1
Benkova, E.2
Blilou, I.3
-
14
-
-
0345064191
-
Efflux-dependent auxin gradients establish the apical-basal axis of Arabidopsis
-
Friml J, Vieten A, Sauer M, et al. 2003. Efflux-dependent auxin gradients establish the apical-basal axis of Arabidopsis. Nature 426: 147-153.
-
(2003)
Nature
, vol.426
, pp. 147-153
-
-
Friml, J.1
Vieten, A.2
Sauer, M.3
-
15
-
-
31844437609
-
The ABC of auxin transport: The role of p-glycoproteins in plant development
-
Geisler M, Murphy AS. 2006. The ABC of auxin transport: the role of p-glycoproteins in plant development. FEBS Letters 580: 1094-1102.
-
(2006)
FEBS Letters
, vol.580
, pp. 1094-1102
-
-
Geisler, M.1
Murphy, A.S.2
-
16
-
-
35548964342
-
Auxin transport is sufficient to generate a maximum and gradient guiding root growth
-
Grieneisen VA, Xu J, Mareé AF, Hogeweg P, Scheres B. 2007. Auxin transport is sufficient to generate a maximum and gradient guiding root growth. Nature 449: 1008-1013.
-
(2007)
Nature
, vol.449
, pp. 1008-1013
-
-
Grieneisen, V.A.1
Xu, J.2
Mareé, A.F.3
Hogeweg, P.4
Scheres, B.5
-
17
-
-
67349090679
-
Local auxin biosynthesis modulates gradient-directed planar polarity in Arabidopsis
-
Ikeda Y, Men S, Fischer U, et al. 2009. Local auxin biosynthesis modulates gradient-directed planar polarity in Arabidopsis. Nature Cell Biology 11: 731-738.
-
(2009)
Nature Cell Biology
, vol.11
, pp. 731-738
-
-
Ikeda, Y.1
Men, S.2
Fischer, U.3
-
18
-
-
35648997836
-
Oxidative stress and formation and maintenance of root stem cells
-
Ivanov VB 2007. Oxidative stress and formation and maintenance of root stem cells. Biochemistry (Moscow) 72: 1110-1114.
-
(2007)
Biochemistry (Moscow)
, vol.72
, pp. 1110-1114
-
-
Ivanov, V.B.1
-
20
-
-
31944449689
-
An auxin-driven polarized transport model for phyllotaxis
-
Jönsson H, Heisler MG, Shapiro BE, Meyerowitz EM, Mjolsness E. 2006. An auxin-driven polarized transport model for phyllotaxis. Proceedings of the National Academy of Sciences USA 103: 1633-1638.
-
(2006)
Proceedings of the National Academy of Sciences USA
, vol.103
, pp. 1633-1638
-
-
Jönsson, H.1
Heisler, M.G.2
Shapiro, B.E.3
Meyerowitz, E.M.4
Mjolsness, E.5
-
21
-
-
79960512557
-
YUCCA6 over-expression demonstrates auxin function in delaying leaf senescence in Arabidopsis thaliana
-
Kim JI, Murphy AS, Baek D, et al. 2011. YUCCA6 over-expression demonstrates auxin function in delaying leaf senescence in Arabidopsis thaliana. Journal of Experimental Botany 62: 3981-3992.
-
(2011)
Journal of Experimental Botany
, vol.62
, pp. 3981-3992
-
-
Kim, J.I.1
Murphy, A.S.2
Baek, D.3
-
22
-
-
58149153143
-
Root system architecture from coupling cell shape to auxin transport
-
Laskowski M, Grieneisen VA, Hofhuis H, et al. 2008. Root system architecture from coupling cell shape to auxin transport. PLoS Biology 6: e307. http://dx.doi.org/10.1371/journal.pbio.0060307.
-
(2008)
PLoS Biology
, vol.6
, pp. e307
-
-
Laskowski, M.1
Grieneisen, V.A.2
Hofhuis, H.3
-
23
-
-
77951995466
-
Sugar levels regulate tryptophan-dependent auxin biosynthesis in developing maize kernels
-
LeClere S, Schmelz E, Chourey P. 2010. Sugar levels regulate tryptophan-dependent auxin biosynthesis in developing maize kernels. Plant Physiology 153: 306-318.
-
(2010)
Plant Physiology
, vol.153
, pp. 306-318
-
-
LeClere, S.1
Schmelz, E.2
Chourey, P.3
-
24
-
-
0035497852
-
Generalized chemokinetic method for gene network simulation
-
Likhoshvai VA, Matushkin YG, Ratushny AV, Ananko EA, Ignatieva EV, Podkolodnaya OA. 2001. Generalized chemokinetic method for gene network simulation. Russian Journal of Molecular Biology 35: 919-926.
-
(2001)
Russian Journal of Molecular Biology
, vol.35
, pp. 919-926
-
-
Likhoshvai, V.A.1
Matushkin, Y.G.2
Ratushny, A.V.3
Ananko, E.A.4
Ignatieva, E.V.5
Podkolodnaya, O.A.6
-
25
-
-
36949039152
-
Mathematical model of auxin distribution in the plant root
-
Likhoshvai VA, Omelianchuk NA, Mironova VV, Fadeev SI, Mjolsness ED, Kolchanov NA. 2007. Mathematical model of auxin distribution in the plant root. Russian Journal of Developmental Biology 38: 446-456.
-
(2007)
Russian Journal of Developmental Biology
, vol.38
, pp. 446-456
-
-
Likhoshvai, V.A.1
Omelianchuk, N.A.2
Mironova, V.V.3
Fadeev, S.I.4
Mjolsness, E.D.5
Kolchanov, N.A.6
-
26
-
-
0035999449
-
Biosynthesis, conjugation, catabolism and homeostasis of indole-3-acetic acid in Arabidopsis thaliana
-
Ljung K, Hull AK, Kowalczyk M, et al. 2002. Biosynthesis, conjugation, catabolism and homeostasis of indole-3-acetic acid in Arabidopsis thaliana. Plant Molecular Biology 49: 249-272.
-
(2002)
Plant Molecular Biology
, vol.49
, pp. 249-272
-
-
Ljung, K.1
Hull, A.K.2
Kowalczyk, M.3
-
27
-
-
22144471286
-
Sites and regulation of auxin biosynthesis in Arabidopsis roots
-
Ljung K, Hull AK, Celenza J, et al. 2005. Sites and regulation of auxin biosynthesis in Arabidopsis roots. The Plant Cell 17: 1090-1104.
-
(2005)
The Plant Cell
, vol.17
, pp. 1090-1104
-
-
Ljung, K.1
Hull, A.K.2
Celenza, J.3
-
28
-
-
77954683799
-
A plausible mechanism for auxin patterning along the developing root
-
Mironova VV, Omelyanchuk NA, Yosiphon G, et al. 2010. A plausible mechanism for auxin patterning along the developing root. BMC Systems Biology 4: 98. http://dx.doi:10.1186/1752-0509-4-98.
-
(2010)
BMC Systems Biology
, vol.4
, pp. 98
-
-
Mironova, V.V.1
Omelyanchuk, N.A.2
Yosiphon, G.3
-
30
-
-
21744449197
-
Auxin inhibits endocytosis and promotes its own efflux from cells
-
Paciorek T, Zazímalová E, Ruthardt N, et al. 2005. Auxin inhibits endocytosis and promotes its own efflux from cells. Nature 435: 1251-1256.
-
(2005)
Nature
, vol.435
, pp. 1251-1256
-
-
Paciorek, T.1
Zazímalová, E.2
Ruthardt, N.3
-
32
-
-
70349260208
-
An auxin gradient and maximum in the Arabidopsis root apex shown by high-resolution cellspecific analysis of IAA distribution and synthesis
-
Petersson S, Johansson A, Kowalczyk M, et al. 2009. An auxin gradient and maximum in the Arabidopsis root apex shown by high-resolution cellspecific analysis of IAA distribution and synthesis. The Plant Cell 21: 1659-1668.
-
(2009)
The Plant Cell
, vol.21
, pp. 1659-1668
-
-
Petersson, S.1
Johansson, A.2
Kowalczyk, M.3
-
33
-
-
33646547313
-
PIN proteins perform a ratelimiting function in cellular auxin efflux
-
Petrásek J, Mravec J, Bouchard R, et al. 2006. PIN proteins perform a ratelimiting function in cellular auxin efflux. Science 312: 914-918.
-
(2006)
Science
, vol.312
, pp. 914-918
-
-
Petrásek, J.1
Mravec, J.2
Bouchard, R.3
-
35
-
-
0007210189
-
14C from exogenous labeled auxin in lateral root primordial of intact pea seedlings (Pisum sativum L.)
-
14C from exogenous labeled auxin in lateral root primordial of intact pea seedlings (Pisum sativum L.). Planta 144: 463-466.
-
(1979)
Planta
, vol.144
, pp. 463-466
-
-
Rowntree, R.A.1
Morris, D.A.2
-
36
-
-
0033601101
-
An auxin-dependent distal organizer of pattern and polarity in the Arabidopsis root
-
Sabatini S, Beis D, Wolkenfelt H, et al. 1999. An auxin-dependent distal organizer of pattern and polarity in the Arabidopsis root. Cell 99: 463-472.
-
(1999)
Cell
, vol.99
, pp. 463-472
-
-
Sabatini, S.1
Beis, D.2
Wolkenfelt, H.3
-
37
-
-
63549137884
-
Regulated transport as a mechanism for pattern generation: Capabilities for phyllotaxis and beyond
-
Sahlin P, Söderberg B, Jönsson H. 2009. Regulated transport as a mechanism for pattern generation: capabilities for phyllotaxis and beyond. Journal of Theoretical Biology 258: 60-70.
-
(2009)
Journal of Theoretical Biology
, vol.258
, pp. 60-70
-
-
Sahlin, P.1
Söderberg, B.2
Jönsson, H.3
-
38
-
-
33751111994
-
Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity
-
Sauer M, Balla J, Luschnig C, et al. 2006. Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity. Genes & Development 20: 2902-2911.
-
(2006)
Genes & Development
, vol.20
, pp. 2902-2911
-
-
Sauer, M.1
Balla, J.2
Luschnig, C.3
-
40
-
-
61349111993
-
Organ regeneration does not require a functional stem cell niche in plants
-
Sena G, Wang X, Liu H, Hofhuis H, Birnbaum KD. 2009. Organ regeneration does not require a functional stem cell niche in plants. Nature 457: 1150-1153.
-
(2009)
Nature
, vol.457
, pp. 1150-1153
-
-
Sena, G.1
Wang, X.2
Liu, H.3
Hofhuis, H.4
Birnbaum, K.D.5
-
41
-
-
77952929656
-
Auxin biosynthesis inhibitors, identified by a genomics-based approach, provide insights into auxin biosynthesis
-
Soeno K, Goda H, Ishii T, et al. 2010. Auxin biosynthesis inhibitors, identified by a genomics-based approach, provide insights into auxin biosynthesis. Plant Cell Physiology 51: 524-536.
-
(2010)
Plant Cell Physiology
, vol.51
, pp. 524-536
-
-
Soeno, K.1
Goda, H.2
Ishii, T.3
-
42
-
-
41149143843
-
TAA1-mediated auxin biosynthesis is essential for hormone crosstalk and plant development
-
Stepanova AN, Robertson-Hoyt J, Yun J, et al. 2008. TAA1-mediated auxin biosynthesis is essential for hormone crosstalk and plant development. Cell 133: 177-191.
-
(2008)
Cell
, vol.133
, pp. 177-191
-
-
Stepanova, A.N.1
Robertson-Hoyt, J.2
Yun, J.3
-
43
-
-
0346783322
-
Auxin transport: The fountain of life in plants?
-
Swarup R, Bennett M. 2003. Auxin transport: the fountain of life in plants? Developmental Cell 5: 824-826.
-
(2003)
Developmental Cell
, vol.5
, pp. 824-826
-
-
Swarup, R.1
Bennett, M.2
-
44
-
-
33644764962
-
Root gravitropism requires lateral root cap and epidermal cells for transport and response to a mobile auxin signal
-
Swarup R, Kramer E, Perry P, et al. 2005. Root gravitropism requires lateral root cap and epidermal cells for transport and response to a mobile auxin signal. Nature Cell Biology 7: 1057-1065.
-
(2005)
Nature Cell Biology
, vol.7
, pp. 1057-1065
-
-
Swarup, R.1
Kramer, E.2
Perry, P.3
-
45
-
-
0036490592
-
Indole-3-acetic acid biosynthesis in isolated axes from germinating beans seeds: The effect of wounding on the biosynthetic pathway
-
Sztein AE, Ilic N, Cohen JD, Cooke TJ. 2002. Indole-3-acetic acid biosynthesis in isolated axes from germinating beans seeds: the effect of wounding on the biosynthetic pathway. Plant Growth Regulation 36: 201-207.
-
(2002)
Plant Growth Regulation
, vol.36
, pp. 201-207
-
-
Sztein, A.E.1
Ilic, N.2
Cohen, J.D.3
Cooke, T.J.4
-
47
-
-
0005994828
-
Auxin control of vascular pattern formation in regenerating pea root meristems grown in vitro
-
Torrey JG 1957. Auxin control of vascular pattern formation in regenerating pea root meristems grown in vitro. American Journal of Botany 44: 859-870.
-
(1957)
American Journal of Botany
, vol.44
, pp. 859-870
-
-
Torrey, J.G.1
-
48
-
-
76649136624
-
The AUX1 LAX family of auxin influx carriers is required for the establishment of embryonic root cell organization in Arabidopsis thaliana
-
Ugartechea-Chirino Y, Swarup R, Swarup K. 2010. The AUX1 LAX family of auxin influx carriers is required for the establishment of embryonic root cell organization in Arabidopsis thaliana. Annals of Botany 105: 277-289.
-
(2010)
Annals of Botany
, vol.105
, pp. 277-289
-
-
Ugartechea-Chirino, Y.1
Swarup, R.2
Swarup, K.3
-
49
-
-
0031277708
-
Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements
-
Ulmasov T, Murfett J, Hagen G, Guilfoyle T. 1997. Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements. The Plant Cell 9: 1963-1971.
-
(1997)
The Plant Cell
, vol.9
, pp. 1963-1971
-
-
Ulmasov, T.1
Murfett, J.2
Hagen, G.3
Guilfoyle, T.4
-
50
-
-
27744545648
-
Functional redundancy of PIN proteins is accompanied by auxin dependent cross-regulation of PIN expression
-
Vieten A, Vanneste S, Wisniewska J, et al. 2005. Functional redundancy of PIN proteins is accompanied by auxin dependent cross-regulation of PIN expression. Development 132: 4521-4531.
-
(2005)
Development
, vol.132
, pp. 4521-4531
-
-
Vieten, A.1
Vanneste, S.2
Wisniewska, J.3
-
51
-
-
78650647021
-
Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling
-
Wabnik K, Kleine-Vehn J, Balla J, et al. 2010. Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling. Molecular Systems Biology 6: 447. http://dx.doi.org/10.1038/msb.2010.103.
-
(2010)
Molecular Systems Biology
, vol.6
, pp. 447
-
-
Wabnik, K.1
Kleine-Vehn, J.2
Balla, J.3
-
52
-
-
33646562869
-
Polar PIN localization directs auxin flow in plants
-
Wisniewska J, Xu J, Seifertova D, et al. 2006. Polar PIN localization directs auxin flow in plants. Science 312: 858-860.
-
(2006)
Science
, vol.312
, pp. 858-860
-
-
Wisniewska, J.1
Xu, J.2
Seifertova, D.3
-
53
-
-
78650270952
-
Positional information and patterning revisited
-
Wolpert L. 2011. Positional information and patterning revisited. Journal of Theoretical Biology 269: 359-365.
-
(2011)
Journal of Theoretical Biology
, vol.269
, pp. 359-365
-
-
Wolpert, L.1
-
54
-
-
19544366287
-
Auxin: Regulation, action, and interaction
-
Woodward AW, Bartel B. 2005. Auxin: regulation, action, and interaction. Annals of Botany 95: 707-735.
-
(2005)
Annals of Botany
, vol.95
, pp. 707-735
-
-
Woodward, A.W.1
Bartel, B.2
-
55
-
-
31144461363
-
A molecular framework for plant regeneration
-
Xu J, Hofhuis H, Heidstra R, Sauer M, Friml J, Scheres B. 2006. A molecular framework for plant regeneration. Science 311: 385-388.
-
(2006)
Science
, vol.311
, pp. 385-388
-
-
Xu, J.1
Hofhuis, H.2
Heidstra, R.3
Sauer, M.4
Friml, J.5
Scheres, B.6
-
56
-
-
77956826794
-
Auxin transporters - Why so many?
-
Zažímalová E, Murphy A, Yang H, Hoyerová K, Hošek P, 2010. Auxin transporters - why so many? Cold Spring Harbor Perspectives in Biology 2: a001552. http://dx.doi.or/10.1101/cshperspect.a001552.
-
(2010)
Cold Spring Harbor Perspectives in Biology
, vol.2
-
-
Zažímalová, E.1
Murphy, A.2
Yang, H.3
Hoyerová, K.4
Hošek, P.5
|